Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Reverse (-)

222745 .. 226119

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGTGAAGAAAACAAACCAGAGGAGAAGAAGGAGGAAGAGAAGAAAGAAGAAGCGCCACCCGAGATTGTGCTCAAGGTTGATATGCATTGTGAAGCTTGCGCCAGGAAAGTTGCTAGAGCCTTGAAGGGTTTTGAAGGAGTGGAGGAGGTAACTACAGACAGCAAAGCGAGCAAGGTGGTGGTGAAAGGCAAAGCAGCAGACCCCATAAAGGTGTGCGAGAGATTACAAAAGAAAAGTGGCAAAAAAGTGGAGCTGATTTCACCTTTGCCTAAACCACCGGCCGAGGAGGAGAAGAAAGAGGAGCCCAAAGAACCAGAGAAAAAGGAGGAGAAAAAAGAGGAGCCTCCCGCTGTTGTTACAGTGATTTTGAAAGTTCGAATGCACTGTGAAGCATGTGCTCAGGTTTTACAGAAGCGAATCCGAAAGATCCAAGGTGTGGAATCAGTAGTAACAGACGTTGGTAACGACCAGGTTGTAGTAACAGGTGTTGTGGATCCAGCCAAGCTTGCAGATGATGTCTACAAAAAAACCAGGAAGCCCGTTTCCATTGTGCCCAAGGAGGAAGAGAAGAAGGAAGAAGAAAAAAAGGAGGAGAAGAAAGAAGAAACCAAAGATGAAGAGAAGAAGGAAGGGGAAACAGTAGAAGGCAAGGGATCAGATGATAACAAGAGTTTTGATATCAAGCGGAGCGAATATTGGCCATCAAAGCACTACTCGGATTATGCATATACCCCACAGATTTTCAGTGATGAGAACCCTAATGCCTGCTCTGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

261

Amino Acids

29.41

Weight (kDa)

5.55

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	25 - 79	3.9e-13	Heavy-metal-associated domain
HMA	PF00403	125 - 171	7.2e-11	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	522
AciI	CCGC	2 cut(s)	351, 688
AclWI	GGATC	4 cut(s)	424, 491, 504, 664
AcoI	YGGCCR	2 cut(s)	282, 701
AfiI	CCNNNNNNNGG	2 cut(s)	211, 439
AgsI	TTSAA	3 cut(s)	127, 137, 373
AjnI	CCWGG	3 cut(s)	104, 471, 533
AluBI	AGCT	3 cut(s)	98, 256, 508
AluI	AGCT	3 cut(s)	98, 256, 508
Alw21I	GWGCWC	2 cut(s)	75, 403
AlwI	GGATC	4 cut(s)	424, 491, 504, 664
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	2 cut(s)	282, 701
ApeKI	GCWGC	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	58, 104
AsuHPI	GGTGA	3 cut(s)	17, 196, 255
AsuII	TTCGAA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	703
BamHI	GGATCC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	75, 403
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	1 cut(s)	712
BciT130I	CCWGG	3 cut(s)	106, 473, 535
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	3 cut(s)	106, 473, 535
BmeT110I	CYCGRG	1 cut(s)	62
BmiI	GGNNCC	3 cut(s)	306, 345, 498
BmrFI	CCNGG	3 cut(s)	106, 473, 535
Bpu10I	CCTNAGC	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	3 cut(s)	285, 433, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 439
Bse118I	RCCGGY	1 cut(s)	280
BseBI	CCWGG	3 cut(s)	106, 473, 535
BseDI	CCNNGG	3 cut(s)	285, 433, 558
BseLI	CCNNNNNNNGG	2 cut(s)	211, 439
BseMII	CTCAG	1 cut(s)	416
BseRI	GAGGAG	8 cut(s)	38, 161, 302, 305, 317, 344, 356, 608
BseSI	GKGCMC	1 cut(s)	558
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	209
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	284, 703
BsiEI	CGRYCG	1 cut(s)	285
BsiHKAI	GWGCWC	2 cut(s)	75, 403
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	211, 439
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	284, 703
BsoBI	CYCGRG	1 cut(s)	62
Bsp119I	TTCGAA	1 cut(s)	379
Bsp1286I	GDGCHC	4 cut(s)	75, 309, 403, 558
Bsp143I	GATC	3 cut(s)	429, 496, 656
BspACI	CCGC	2 cut(s)	351, 688
BspANI	GGCC	2 cut(s)	284, 703
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	3 cut(s)	306, 345, 498
BspPI	GGATC	4 cut(s)	424, 491, 504, 664
BspT104I	TTCGAA	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	3 cut(s)	285, 433, 558
BssMI	GATC	3 cut(s)	429, 496, 656
BssT1I	CCWWGG	2 cut(s)	433, 558
Bst2UI	CCWGG	3 cut(s)	106, 473, 535
Bst4CI	ACNGT	3 cut(s)	364, 389, 643
Bst6I	CTCTTC	3 cut(s)	33, 561, 615
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	4 cut(s)	100, 172, 510, 769
BstDEI	CTNAG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	58, 104
BstKTI	GATC	3 cut(s)	432, 499, 659
BstMBI	GATC	3 cut(s)	429, 496, 656
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 509, 709
BstNI	CCWGG	3 cut(s)	106, 473, 535
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	3 cut(s)	104, 471, 533
BstSFI	CTRYAG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	209
BstX2I	RGATCY	2 cut(s)	429, 496
BstYI	RGATCY	2 cut(s)	429, 496
BstZI	CGGCCG	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	284, 703
BtsIMutI	CAGTG	3 cut(s)	369, 385, 754
Cac8I	GCNNGC	4 cut(s)	100, 172, 510, 769
CfoI	GCGC	2 cut(s)	58, 104
Cfr10I	RCCGGY	1 cut(s)	280
CsiI	ACCWGGT	1 cut(s)	471
CviAII	CATG	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	3 cut(s)	431, 498, 658
DpnII	GATC	3 cut(s)	429, 496, 656
EaeI	YGGCCR	2 cut(s)	282, 701
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	3 cut(s)	33, 561, 615
EarI	CTCTTC	3 cut(s)	33, 561, 615
EclXI	CGGCCG	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	433, 558
Eco24I	GRGCYC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	682
Eco52I	CGGCCG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	62
EcoRII	CCWGG	3 cut(s)	104, 471, 533
EcoRV	GATATC	1 cut(s)	682
EcoT14I	CCWWGG	2 cut(s)	433, 558
EcoT22I	ATGCAT	2 cut(s)	90, 730
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	2 cut(s)	433, 558
FaeI	CATG	1 cut(s)	399
FaiI	YATR	7 cut(s)	86, 209, 397, 726, 730, 732, 779
FatI	CATG	1 cut(s)	395
FauI	CCCGC	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	1 cut(s)	198
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	2 cut(s)	57, 103
GluI	GCNGC	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	284, 703
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	2 cut(s)	58, 104
Hin1II	CATG	1 cut(s)	399
Hin6I	GCGC	2 cut(s)	56, 102
HinP1I	GCGC	2 cut(s)	56, 102
HindIII	AAGCTT	2 cut(s)	96, 506
HinfI	GANTC	2 cut(s)	420, 443
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	3 cut(s)	17, 196, 255
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	3 cut(s)	425, 661, 721
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	7 cut(s)	25, 121, 131, 568, 622, 626, 641
HpyCH4III	ACNGT	3 cut(s)	364, 389, 643
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	4 cut(s)	88, 385, 512, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 509, 709
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	1 cut(s)	399
HspAI	GCGC	2 cut(s)	56, 102
Kzo9I	GATC	3 cut(s)	429, 496, 656
LmnI	GCTCC	4 cut(s)	253, 304, 343, 690
Lsp1109I	GCAGC	1 cut(s)	209
MabI	ACCWGGT	1 cut(s)	471
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	5 cut(s)	151, 358, 451, 464, 481
MalI	GATC	3 cut(s)	431, 498, 658
MboI	GATC	3 cut(s)	429, 496, 656
MflI	RGATCY	2 cut(s)	429, 496
MhlI	GDGCHC	4 cut(s)	75, 309, 403, 558
MlsI	TGGCCA	1 cut(s)	703
MluNI	TGGCCA	1 cut(s)	703
Mox20I	TGGCCA	1 cut(s)	703
Mph1103I	ATGCAT	2 cut(s)	90, 730
MscI	TGGCCA	1 cut(s)	703
MslI	CAYNNNNRTG	1 cut(s)	212
Msp20I	TGGCCA	1 cut(s)	703
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	3 cut(s)	106, 473, 535
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	3 cut(s)	106, 473, 535
MwoI	GCNNNNNNNGC	3 cut(s)	171, 509, 709
NdeII	GATC	3 cut(s)	429, 496, 656
NlaIII	CATG	1 cut(s)	399
NlaIV	GGNNCC	3 cut(s)	306, 345, 498
NmeAIII	GCCGAG	1 cut(s)	310
NsiI	ATGCAT	2 cut(s)	90, 730
NspI	RCATGY	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	420, 443
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	199
Psp6I	CCWGG	3 cut(s)	104, 471, 533
PspGI	CCWGG	3 cut(s)	104, 471, 533
PspN4I	GGNNCC	3 cut(s)	306, 345, 498
PsuI	RGATCY	2 cut(s)	429, 496
RseI	CAYNNNNRTG	1 cut(s)	212
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	3 cut(s)	429, 496, 656
ScrFI	CCNGG	3 cut(s)	106, 473, 535
SduI	GDGCHC	4 cut(s)	75, 309, 403, 558
SexAI	ACCWGGT	1 cut(s)	471
SfcI	CTRYAG	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SsiI	CCGC	2 cut(s)	351, 688
SspI	AATATT	1 cut(s)	698
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	104, 471, 533
StyI	CCWWGG	2 cut(s)	433, 558
TaaI	ACNGT	3 cut(s)	364, 389, 643
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	420, 443
TscAI	CASTG	3 cut(s)	369, 392, 754
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	633
TspRI	CASTG	3 cut(s)	369, 392, 754
Van91I	CCANNNNNTGG	1 cut(s)	439
XceI	RCATGY	1 cut(s)	399
XmiI	GTMKAC	1 cut(s)	522
XspI	CTAG	1 cut(s)	117
Zsp2I	ATGCAT	2 cut(s)	90, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.