Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Reverse (-)

28321535 .. 28323986

Gene Structure 2452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1138200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGGGAGGAGGAGAAGAAGCCTGAGGAGAAGAAAATGGAGGAGAAGAAGCCAGAGGAGGTGAAGAAAGAGGGAGAGAAGAAGCCTGAAGCTGCCGAGGAAAAGAAGGAGGAGAAGAAAGCCGTGGAGGGAAAAGATGGGAAAGTAGATGCCAAGGAGGGTGAGGACGCCGCCGCCGCTCCTCCGCCTCCGCCGCCACCTCAAGAAATTGTGCTCAAAGTTTATATGCATTGTGAAGGGTGTGCTCGCAAGGTGAAGCGGTGCCTCAAAGGATTTCAAGGGGTGGAAGATGTGAGCACAGATTGCAAAACTCACAAGGTGGTTGTGAAGGGAGAGAAGGCTGATCCAATTAAGGTTCTTGAAAGAGTTCAGAGGAAGAGCCACCGGCAGGTGGAGCTGCTGTCTCCAATCCCAAAACCGCCGACGGAGGAGGAGAAGAAGGCGGAGGAGAAAGAGAAGCCTAAGCCAGAAGAAAAGAAAGAGGAGCCTCAAGTCATCATTGTGGTGCTGAAAGTTCACATGCATTGCGACGCCTGTGCACAAGAAATCAAGAAACGCATTCTGAGAATGAAAGGAGTGGAATCTGCCGAAGCGGATCTTAAGAGCTCAGAGGTGACAGTGAATGGTGTGTTTGATCCGGCTAAGCTAATTGATTATGTACATAAAAGAACCGGGAAGCACGCGGCGATCGTGAAGCAAGAACCGGAGAAGAAAGAGAAAGAAGAAGCCAAAGATGAGAAGAAAGGTGGTGAGGAAGGTGATGACAAAGAGAAGAAAGGCAAAGATGGTGGTGGTGGTGATGAAGCAAAAGCAGAAGAGAACAAGGAAAATAAAGCCGACAACAATGAAGCTGCAGCCGCCGCGGCAGCTGGTGGTGCACCGGAAGGAGCTGCCACAGAAGAGACTAAGGTGGTGGAGCTGATGCAGAAGAATGAGTACTATTATCACCCACCAAGGTATGACATGGAATTGTATGCCCACCCACCTCAGATCTTCAGTGATGAGAACCCTAATGCCTGCTCTATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

344

Amino Acids

38.18

Weight (kDa)

5.66

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	74 - 124	6.2e-12	Heavy-metal-associated domain
HMA	PF00403	170 - 227	1.5e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	379
Acc36I	ACCTGC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	261
AccBSI	CCGCTC	1 cut(s)	179
AccII	CGCG	2 cut(s)	683, 863
AclWI	GGATC	3 cut(s)	338, 603, 629
AcuI	CTGAAG	2 cut(s)	108, 979
AcyI	GRCGYC	2 cut(s)	168, 531
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	2 cut(s)	660, 938
AfiI	CCNNNNNNNGG	2 cut(s)	388, 391
AflII	CTTAAG	1 cut(s)	599
AgsI	TTSAA	2 cut(s)	278, 362
AluBI	AGCT	8 cut(s)	92, 397, 606, 646, 851, 869, 890, 919
AluI	AGCT	8 cut(s)	92, 397, 606, 646, 851, 869, 890, 919
Alw21I	GWGCWC	6 cut(s)	216, 247, 299, 541, 608, 880
Alw26I	GTCTC	2 cut(s)	408, 896
Alw44I	GTGCAC	2 cut(s)	537, 876
AlwI	GGATC	3 cut(s)	338, 603, 629
ApaLI	GTGCAC	2 cut(s)	537, 876
ApeKI	GCWGC	6 cut(s)	92, 397, 851, 854, 866, 890
Asp700I	GAANNNNTTC	1 cut(s)	366
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	8 cut(s)	73, 173, 265, 625, 761, 770, 809, 938
AxyI	CCTNAGG	1 cut(s)	24
BaeGI	GKGCMC	2 cut(s)	541, 880
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	608
BarI	GAAGNNNNNNTAC	2 cut(s)	920, 952
Bbv12I	GWGCWC	6 cut(s)	216, 247, 299, 541, 608, 880
BbvI	GCAGC	6 cut(s)	79, 384, 838, 866, 877, 878
BccI	CCATC	2 cut(s)	131, 779
BceAI	ACGGC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	408, 896
BfmI	CTRYAG	1 cut(s)	852
BfrI	CTTAAG	1 cut(s)	599
BfuAI	ACCTGC	1 cut(s)	379
BglI	GCCNNNNNGGC	1 cut(s)	863
BglII	AGATCT	1 cut(s)	990
BlpI	GCTNAGC	1 cut(s)	642
BmcAI	AGTACT	1 cut(s)	938
Bme1390I	CCNGG	1 cut(s)	673
BmiI	GGNNCC	2 cut(s)	263, 486
BmrFI	CCNGG	1 cut(s)	673
BmsI	GCATC	2 cut(s)	139, 912
Bpu10I	CCTNAGC	1 cut(s)	462
Bpu1102I	GCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	2 cut(s)	186, 474
BpuMI	CCSGG	1 cut(s)	673
BsaHI	GRCGYC	2 cut(s)	168, 531
BsaJI	CCNNGG	5 cut(s)	96, 123, 153, 861, 953
BsaWI	WCCGGW	2 cut(s)	703, 880
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 391
Bse118I	RCCGGY	1 cut(s)	384
Bse21I	CCTNAGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	523
BseDI	CCNNGG	5 cut(s)	96, 123, 153, 861, 953
BseLI	CCNNNNNNNGG	2 cut(s)	388, 391
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	4 cut(s)	15, 554, 621, 1001
BseSI	GKGCMC	2 cut(s)	541, 880
BseXI	GCAGC	6 cut(s)	79, 384, 838, 866, 877, 878
Bsh1236I	CGCG	2 cut(s)	683, 863
Bsh1285I	CGRYCG	1 cut(s)	690
BshNI	GGYRCC	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	690
BsiHKAI	GWGCWC	6 cut(s)	216, 247, 299, 541, 608, 880
BsiSI	CCGG	5 cut(s)	385, 638, 672, 704, 881
BslI	CCNNNNNNNGG	2 cut(s)	388, 391
BsmAI	GTCTC	2 cut(s)	408, 896
BsmI	GAATGC	1 cut(s)	558
Bsp1286I	GDGCHC	6 cut(s)	216, 247, 299, 541, 608, 880
Bsp1407I	TGTACA	1 cut(s)	658
Bsp143I	GATC	5 cut(s)	343, 595, 634, 687, 990
Bsp1720I	GCTNAGC	1 cut(s)	642
BspCNI	CTCAG	4 cut(s)	16, 555, 620, 1000
BspFNI	CGCG	2 cut(s)	683, 863
BspLI	GGNNCC	2 cut(s)	263, 486
BspMAI	CTGCAG	1 cut(s)	856
BspMI	ACCTGC	1 cut(s)	379
BspPI	GGATC	3 cut(s)	338, 603, 629
BspQI	GCTCTTC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	523
BsrFI	RCCGGY	1 cut(s)	384
BsrGI	TGTACA	1 cut(s)	658
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	5 cut(s)	96, 123, 153, 861, 953
BssMI	GATC	5 cut(s)	343, 595, 634, 687, 990
BssNI	GRCGYC	2 cut(s)	168, 531
BssT1I	CCWWGG	2 cut(s)	153, 953
Bst4CI	ACNGT	1 cut(s)	619
Bst6I	CTCTTC	3 cut(s)	371, 810, 894
BstACI	GRCGYC	2 cut(s)	168, 531
BstAFI	CTTAAG	1 cut(s)	599
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstAUI	TGTACA	1 cut(s)	658
BstC8I	GCNNGC	3 cut(s)	247, 681, 1018
BstDEI	CTNAG	7 cut(s)	24, 462, 563, 607, 642, 906, 987
BstDSI	CCRYGG	2 cut(s)	123, 861
BstFNI	CGCG	2 cut(s)	683, 863
BstKTI	GATC	5 cut(s)	346, 598, 637, 690, 993
BstMAI	GTCTC	2 cut(s)	408, 896
BstMBI	GATC	5 cut(s)	343, 595, 634, 687, 990
BstMCI	CGRYCG	1 cut(s)	690
BstMWI	GCNNNNNNNGC	9 cut(s)	176, 193, 303, 394, 857, 860, 863, 866, 875
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	1 cut(s)	671
BstSFI	CTRYAG	1 cut(s)	852
BstSLI	GKGCMC	2 cut(s)	541, 880
BstUI	CGCG	2 cut(s)	683, 863
BstV1I	GCAGC	6 cut(s)	79, 384, 838, 866, 877, 878
BstX2I	RGATCY	2 cut(s)	595, 990
BstYI	RGATCY	2 cut(s)	595, 990
Bsu36I	CCTNAGG	1 cut(s)	24
BtgI	CCRYGG	2 cut(s)	123, 861
BtsIMutI	CAGTG	2 cut(s)	624, 1003
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	3 cut(s)	247, 681, 1018
Cfr10I	RCCGGY	1 cut(s)	384
Cfr42I	CCGCGG	1 cut(s)	864
CseI	GACGC	2 cut(s)	176, 539
Csp6I	GTAC	2 cut(s)	659, 937
CspCI	CAANNNNNGTGG	2 cut(s)	769, 804
CviAII	CATG	3 cut(s)	520, 964, 1027
CviQI	GTAC	2 cut(s)	659, 937
DdeI	CTNAG	7 cut(s)	24, 462, 563, 607, 642, 906, 987
DpnI	GATC	5 cut(s)	345, 597, 636, 689, 992
DpnII	GATC	5 cut(s)	343, 595, 634, 687, 990
DraIII	CACNNNGTG	1 cut(s)	319
Eam1104I	CTCTTC	3 cut(s)	371, 810, 894
EarI	CTCTTC	3 cut(s)	371, 810, 894
EciI	GGCGGA	3 cut(s)	174, 180, 458
Ecl136II	GAGCTC	1 cut(s)	606
Eco130I	CCWWGG	2 cut(s)	153, 953
Eco24I	GRGCYC	1 cut(s)	608
Eco53kI	GAGCTC	1 cut(s)	606
Eco57I	CTGAAG	2 cut(s)	108, 979
Eco81I	CCTNAGG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	606
EcoT14I	CCWWGG	2 cut(s)	153, 953
EcoT22I	ATGCAT	2 cut(s)	231, 525
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	2 cut(s)	153, 953
FaeI	CATG	3 cut(s)	523, 967, 1030
FaiI	YATR	9 cut(s)	225, 227, 521, 657, 663, 960, 965, 975, 1028
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FatI	CATG	3 cut(s)	519, 963, 1026
FriOI	GRGCYC	1 cut(s)	608
HapII	CCGG	5 cut(s)	385, 638, 672, 704, 881
HgaI	GACGC	2 cut(s)	176, 539
Hin1I	GRCGYC	2 cut(s)	168, 531
Hin1II	CATG	3 cut(s)	523, 967, 1030
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	5 cut(s)	385, 638, 672, 704, 881
HphI	GGTGA	8 cut(s)	73, 173, 265, 625, 761, 770, 809, 938
Hpy166II	GTNNAC	3 cut(s)	517, 539, 878
Hpy188I	TCNGA	4 cut(s)	372, 564, 610, 990
Hpy188III	TCNNGA	4 cut(s)	203, 359, 550, 691
Hpy8I	GTNNAC	3 cut(s)	517, 539, 878
Hpy99I	CGWCG	2 cut(s)	427, 533
HpyAV	CCTTC	7 cut(s)	100, 230, 322, 331, 433, 749, 878
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4V	TGCA	7 cut(s)	229, 306, 523, 539, 854, 878, 925
HpyF10VI	GCNNNNNNNGC	9 cut(s)	176, 193, 303, 394, 857, 860, 863, 866, 875
HpyF3I	CTNAG	7 cut(s)	24, 462, 563, 607, 642, 906, 987
Hsp92I	GRCGYC	2 cut(s)	168, 531
Hsp92II	CATG	3 cut(s)	523, 967, 1030
KspI	CCGCGG	1 cut(s)	864
Kzo9I	GATC	5 cut(s)	343, 595, 634, 687, 990
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	5 cut(s)	184, 394, 484, 887, 916
Lsp1109I	GCAGC	6 cut(s)	79, 384, 838, 866, 877, 878
LweI	GCATC	2 cut(s)	139, 912
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	5 cut(s)	345, 597, 636, 689, 992
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	5 cut(s)	343, 595, 634, 687, 990
MflI	RGATCY	2 cut(s)	595, 990
MhlI	GDGCHC	6 cut(s)	216, 247, 299, 541, 608, 880
MluCI	AATT	4 cut(s)	207, 348, 648, 968
Mph1103I	ATGCAT	2 cut(s)	231, 525
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	2 cut(s)	351, 600
MslI	CAYNNNNRTG	2 cut(s)	500, 503
MspA1I	CMGCKG	2 cut(s)	863, 869
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	5 cut(s)	385, 638, 672, 704, 881
MspR9I	CCNGG	1 cut(s)	673
Mva1269I	GAATGC	1 cut(s)	558
MvnI	CGCG	2 cut(s)	683, 863
MwoI	GCNNNNNNNGC	9 cut(s)	176, 193, 303, 394, 857, 860, 863, 866, 875
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	5 cut(s)	343, 595, 634, 687, 990
NlaIII	CATG	3 cut(s)	523, 967, 1030
NlaIV	GGNNCC	2 cut(s)	263, 486
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	613
NsiI	ATGCAT	2 cut(s)	231, 525
NspI	RCATGY	1 cut(s)	523
PaqCI	CACCTGC	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	687
PctI	GAATGC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	581
Ple19I	CGATCG	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	608
PspN4I	GGNNCC	2 cut(s)	263, 486
PstI	CTGCAG	1 cut(s)	856
PsuI	RGATCY	2 cut(s)	595, 990
PvuI	CGATCG	1 cut(s)	690
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	2 cut(s)	660, 938
RsaNI	GTAC	2 cut(s)	659, 937
RseI	CAYNNNNRTG	2 cut(s)	500, 503
SacI	GAGCTC	1 cut(s)	608
SacII	CCGCGG	1 cut(s)	864
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	351, 600
Sau3AI	GATC	5 cut(s)	343, 595, 634, 687, 990
ScaI	AGTACT	1 cut(s)	938
ScrFI	CCNGG	1 cut(s)	673
SduI	GDGCHC	6 cut(s)	216, 247, 299, 541, 608, 880
SfaNI	GCATC	2 cut(s)	139, 912
SfcI	CTRYAG	1 cut(s)	852
Sfr303I	CCGCGG	1 cut(s)	864
SgrBI	CCGCGG	1 cut(s)	864
SmiMI	CAYNNNNRTG	2 cut(s)	500, 503
SmlI	CTYRAG	3 cut(s)	201, 489, 599
SmoI	CTYRAG	3 cut(s)	201, 489, 599
Sse9I	AATT	4 cut(s)	207, 348, 648, 968
SstI	GAGCTC	1 cut(s)	608
StyD4I	CCNGG	1 cut(s)	671
StyI	CCWWGG	2 cut(s)	153, 953
TaaI	ACNGT	1 cut(s)	619
TasI	AATT	4 cut(s)	207, 348, 648, 968
TatI	WGTACW	2 cut(s)	658, 936
TauI	GCSGC	8 cut(s)	173, 176, 179, 196, 686, 860, 863, 866
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	351, 600
Tru9I	TTAA	2 cut(s)	351, 600
TscAI	CASTG	2 cut(s)	624, 1003
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	6 cut(s)	92, 397, 851, 854, 866, 890
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	3 cut(s)	584, 816, 861
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	624, 1003
Vha464I	CTTAAG	1 cut(s)	599
VneI	GTGCAC	2 cut(s)	537, 876
XceI	RCATGY	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	366
ZrmI	AGTACT	1 cut(s)	938
Zsp2I	ATGCAT	2 cut(s)	231, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.