Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8488275.1

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Forward (+)

315 .. 2147

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8488275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgggggaggaggggaaaaagcctgaggagaagaaaatggaggagaagaagcctgaggaggtgaaaaagcctgaagaggaaaagaaagctgaggagaagaaggaagagaaaccagctgaggagaaaaaggaagagaagaaagctggggagggtaaagatggcaaagaggccaaagagggtgatgctccaccaccaccaccgccaccacctcaggaaattgtgctcagagtctatatgcattgtgaaggttgtgctagaaaggtcaagaggtgtctcaaaggctttcaaggggtggaagatgtgagcactgattgcaagagtcacaaggtggttgtcaagggcgagaaggctgatccaagcaaggttctcgagagagttcagaggaagagtcacagacaagttgagcttctctccccaatcccaaaaccaccagctgaggaggagaagaagcctgaagagaaacccaagccagaggagaagaaagaagagcctcctcaggtcatcactgtggtgctcaaggttcacatgcattgcgaggcttgtgcacaagaaatcaagaaacgcatacagaggatgaaaggagtggaatcagcagaaccagatctaaagggctcacaggtgacagtaaagggtgtgtttgatccggccaagctagttgagtacgtgaacaaaaggaccggcaagcacgcagagatagtgaagcaagaaccggaaaagaaggctgacaaagaagaagccaaagagggaagtaaagacgagaagaaaggtggtgaagaaggtgacaaggacaagaagagtggtggtggaggtgaggccgcaccagcagaagagaacaaagacaagaaaggtgacggcaatgaaggcggtgctgcagctgctgctacaccggatggcggggcggttacagaagagaccaaggttgttgagctcatgaagaacgagtacaatcactatccacaaagacttcccatggagtacgcctaccctccacagttcttcagtgatgagaaccccaatgcatgttctgttatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

344

Amino Acids

38.21

Weight (kDa)

6.02

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	200, 816, 864, 894, 899
AclWI	GGATC	2 cut(s)	347, 635
AcoI	YGGCCR	1 cut(s)	645
AcuI	CTGAAG	3 cut(s)	93, 474, 982
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	3 cut(s)	662, 944, 977
AfiI	CCNNNNNNNGG	1 cut(s)	893
AgsI	TTSAA	1 cut(s)	287
AleI	CACNNNNGTG	1 cut(s)	509
AluBI	AGCT	8 cut(s)	89, 116, 143, 406, 434, 652, 875, 928
AluI	AGCT	8 cut(s)	89, 116, 143, 406, 434, 652, 875, 928
Alw21I	GWGCWC	5 cut(s)	225, 308, 516, 547, 930
Alw26I	GTCTC	2 cut(s)	278, 905
Alw44I	GTGCAC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	347, 635
AlwNI	CAGNNNCTG	1 cut(s)	878
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	3 cut(s)	168, 645, 813
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	4 cut(s)	869, 872, 875, 878
AspS9I	GGNCC	1 cut(s)	675
AsuHPI	GGTGA	7 cut(s)	73, 191, 631, 782, 791, 821, 860
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	675
AxyI	CCTNAGG	4 cut(s)	24, 54, 210, 495
BaeGI	GKGCMC	1 cut(s)	547
BanII	GRGCYC	2 cut(s)	614, 930
BarI	GAAGNNNNNNTAC	2 cut(s)	926, 958
Bbv12I	GWGCWC	5 cut(s)	225, 308, 516, 547, 930
BbvCI	CCTCAGC	3 cut(s)	90, 117, 435
BbvI	GCAGC	4 cut(s)	856, 862, 865, 884
BccI	CCATC	2 cut(s)	152, 884
BceAI	ACGGC	1 cut(s)	868
BcgI	CGANNNNNNTGC	4 cut(s)	349, 383, 524, 558
BcoDI	GTCTC	2 cut(s)	278, 905
BfaI	CTAG	2 cut(s)	255, 653
BfmI	CTRYAG	1 cut(s)	870
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	5 cut(s)	816, 870, 873, 876, 879
BlsI	GCNGC	5 cut(s)	817, 871, 874, 877, 880
Bme18I	GGWCC	1 cut(s)	675
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	675
BmsI	GCATC	1 cut(s)	172
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
Bpu10I	CCTNAGC	3 cut(s)	90, 117, 435
BpuEI	CTTGAG	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	664
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	2 cut(s)	915, 969
BsaWI	WCCGGW	2 cut(s)	709, 886
Bsc4I	CCNNNNNNNGG	1 cut(s)	893
Bse118I	RCCGGY	1 cut(s)	677
Bse21I	CCTNAGG	4 cut(s)	24, 54, 210, 495
Bse3DI	GCAATG	2 cut(s)	529, 862
BseDI	CCNNGG	2 cut(s)	915, 969
BseGI	GGATG	2 cut(s)	579, 895
BseLI	CCNNNNNNNGG	1 cut(s)	893
BseMI	GCAATG	2 cut(s)	529, 862
BseMII	CTCAG	8 cut(s)	15, 45, 81, 108, 224, 238, 426, 509
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	4 cut(s)	856, 862, 865, 884
BseYI	CCCAGC	1 cut(s)	143
BshFI	GGCC	3 cut(s)	170, 647, 815
BsiHKAI	GWGCWC	5 cut(s)	225, 308, 516, 547, 930
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	4 cut(s)	644, 678, 710, 887
BslI	CCNNNNNNNGG	1 cut(s)	893
BsmAI	GTCTC	2 cut(s)	278, 905
BsnI	GGCC	3 cut(s)	170, 647, 815
Bso31I	GGTCTC	1 cut(s)	905
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	6 cut(s)	225, 308, 516, 547, 614, 930
Bsp143I	GATC	3 cut(s)	352, 601, 640
Bsp19I	CCATGG	1 cut(s)	969
BspACI	CCGC	5 cut(s)	200, 816, 864, 894, 899
BspANI	GGCC	3 cut(s)	170, 647, 815
BspCNI	CTCAG	8 cut(s)	16, 46, 82, 109, 223, 237, 427, 508
BspHI	TCATGA	1 cut(s)	930
BspMAI	CTGCAG	1 cut(s)	874
BspPI	GGATC	2 cut(s)	347, 635
BspQI	GCTCTTC	1 cut(s)	480
BspTNI	GGTCTC	1 cut(s)	905
BsrDI	GCAATG	2 cut(s)	529, 862
BsrFI	RCCGGY	1 cut(s)	677
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	2 cut(s)	915, 969
BssMI	GATC	3 cut(s)	352, 601, 640
BssT1I	CCWWGG	2 cut(s)	915, 969
Bst4CI	ACNGT	3 cut(s)	508, 625, 993
Bst6I	CTCTTC	9 cut(s)	69, 99, 126, 380, 450, 480, 788, 822, 903
BstAPI	GCANNNNNTGC	2 cut(s)	312, 878
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	2 cut(s)	683, 687
BstDEI	CTNAG	8 cut(s)	24, 54, 90, 117, 210, 224, 435, 495
BstDSI	CCRYGG	1 cut(s)	969
BstF5I	GGATG	2 cut(s)	579, 895
BstKTI	GATC	3 cut(s)	355, 604, 643
BstMAI	GTCTC	2 cut(s)	278, 905
BstMBI	GATC	3 cut(s)	352, 601, 640
BstMWI	GCNNNNNNNGC	5 cut(s)	312, 821, 861, 875, 878
BstNSI	RCATGY	2 cut(s)	529, 1023
BstSFI	CTRYAG	1 cut(s)	870
BstSLI	GKGCMC	1 cut(s)	547
BstV1I	GCAGC	4 cut(s)	856, 862, 865, 884
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
Bsu36I	CCTNAGG	4 cut(s)	24, 54, 210, 495
BsuRI	GGCC	3 cut(s)	170, 647, 815
BtgI	CCRYGG	1 cut(s)	969
BtsCI	GGATG	2 cut(s)	579, 895
BtsIMutI	CAGTG	3 cut(s)	306, 504, 1006
Cac8I	GCNNGC	2 cut(s)	683, 687
CaiI	CAGNNNCTG	1 cut(s)	878
CciI	TCATGA	1 cut(s)	930
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	1 cut(s)	675
Csp6I	GTAC	3 cut(s)	661, 943, 976
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviAII	CATG	4 cut(s)	526, 931, 970, 1020
CviQI	GTAC	3 cut(s)	661, 943, 976
DdeI	CTNAG	8 cut(s)	24, 54, 90, 117, 210, 224, 435, 495
DpnI	GATC	3 cut(s)	354, 603, 642
DpnII	GATC	3 cut(s)	352, 601, 640
DraIII	CACNNNGTG	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	9 cut(s)	69, 99, 126, 380, 450, 480, 788, 822, 903
EarI	CTCTTC	9 cut(s)	69, 99, 126, 380, 450, 480, 788, 822, 903
Ecl136II	GAGCTC	1 cut(s)	928
Eco130I	CCWWGG	2 cut(s)	915, 969
Eco24I	GRGCYC	2 cut(s)	614, 930
Eco31I	GGTCTC	1 cut(s)	905
Eco47I	GGWCC	1 cut(s)	675
Eco53kI	GAGCTC	1 cut(s)	928
Eco57I	CTGAAG	3 cut(s)	93, 474, 982
Eco81I	CCTNAGG	4 cut(s)	24, 54, 210, 495
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	928
EcoT14I	CCWWGG	2 cut(s)	915, 969
EcoT22I	ATGCAT	3 cut(s)	240, 531, 1021
EcoT38I	GRGCYC	2 cut(s)	614, 930
ErhI	CCWWGG	2 cut(s)	915, 969
FaeI	CATG	4 cut(s)	529, 934, 973, 1023
FaiI	YATR	8 cut(s)	234, 236, 527, 566, 932, 971, 1021, 1031
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	4 cut(s)	525, 930, 969, 1019
FauI	CCCGC	1 cut(s)	887
Fnu4HI	GCNGC	5 cut(s)	816, 870, 873, 876, 879
FokI	GGATG	2 cut(s)	586, 902
FriOI	GRGCYC	2 cut(s)	614, 930
Fsp4HI	GCNGC	5 cut(s)	816, 870, 873, 876, 879
FspBI	CTAG	2 cut(s)	255, 653
GluI	GCNGC	5 cut(s)	816, 870, 873, 876, 879
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	170, 647, 815
HapII	CCGG	4 cut(s)	644, 678, 710, 887
Hin1II	CATG	4 cut(s)	529, 934, 973, 1023
HinfI	GANTC	4 cut(s)	228, 319, 388, 587
HpaII	CCGG	4 cut(s)	644, 678, 710, 887
HphI	GGTGA	7 cut(s)	73, 191, 631, 782, 791, 821, 860
Hpy166II	GTNNAC	3 cut(s)	523, 545, 667
Hpy188I	TCNGA	2 cut(s)	227, 381
Hpy188III	TCNNGA	6 cut(s)	212, 265, 368, 370, 556, 931
Hpy8I	GTNNAC	3 cut(s)	523, 545, 667
HpyAV	CCTTC	6 cut(s)	94, 239, 340, 712, 770, 854
HpyCH4III	ACNGT	3 cut(s)	508, 625, 993
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	6 cut(s)	238, 315, 529, 545, 872, 1019
HpyF10VI	GCNNNNNNNGC	5 cut(s)	312, 821, 861, 875, 878
HpyF3I	CTNAG	8 cut(s)	24, 54, 90, 117, 210, 224, 435, 495
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	4 cut(s)	529, 934, 973, 1023
Kzo9I	GATC	3 cut(s)	352, 601, 640
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	4 cut(s)	856, 862, 865, 884
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	255, 653
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	6 cut(s)	320, 389, 619, 779, 848, 901
MalI	GATC	3 cut(s)	354, 603, 642
MboI	GATC	3 cut(s)	352, 601, 640
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	6 cut(s)	225, 308, 516, 547, 614, 930
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	3 cut(s)	237, 328, 397
Mph1103I	ATGCAT	3 cut(s)	240, 531, 1021
MslI	CAYNNNNRTG	2 cut(s)	506, 509
MspA1I	CMGCKG	3 cut(s)	116, 434, 875
MspI	CCGG	4 cut(s)	644, 678, 710, 887
MwoI	GCNNNNNNNGC	5 cut(s)	312, 821, 861, 875, 878
NcoI	CCATGG	1 cut(s)	969
NdeII	GATC	3 cut(s)	352, 601, 640
NlaIII	CATG	4 cut(s)	529, 934, 973, 1023
NmuCI	GTSAC	5 cut(s)	320, 389, 619, 779, 848
NsiI	ATGCAT	3 cut(s)	240, 531, 1021
NspI	RCATGY	2 cut(s)	529, 1023
OliI	CACNNNNGTG	1 cut(s)	509
PaeR7I	CTCGAG	1 cut(s)	368
PagI	TCATGA	1 cut(s)	930
PciSI	GCTCTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	587
PkrI	GCNGC	5 cut(s)	817, 871, 874, 877, 880
PleI	GAGTC	3 cut(s)	236, 327, 396
PpsI	GAGTC	3 cut(s)	236, 327, 396
Ppu21I	YACGTR	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	930
PspFI	CCCAGC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	675
PstI	CTGCAG	1 cut(s)	874
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	1 cut(s)	601
PvuII	CAGCTG	3 cut(s)	116, 434, 875
RsaI	GTAC	3 cut(s)	662, 944, 977
RsaNI	GTAC	3 cut(s)	661, 943, 976
RseI	CAYNNNNRTG	2 cut(s)	506, 509
SacI	GAGCTC	1 cut(s)	930
SapI	GCTCTTC	1 cut(s)	480
SatI	GCNGC	5 cut(s)	816, 870, 873, 876, 879
Sau3AI	GATC	3 cut(s)	352, 601, 640
Sau96I	GGNCC	1 cut(s)	675
SchI	GAGTC	3 cut(s)	237, 328, 397
SduI	GDGCHC	6 cut(s)	225, 308, 516, 547, 614, 930
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	870
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	675
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	2 cut(s)	506, 509
SmlI	CTYRAG	2 cut(s)	368, 515
SmoI	CTYRAG	2 cut(s)	368, 515
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	5 cut(s)	200, 816, 864, 894, 899
SspMI	CTAG	2 cut(s)	255, 653
SstI	GAGCTC	1 cut(s)	930
StyI	CCWWGG	2 cut(s)	915, 969
TaaI	ACNGT	3 cut(s)	508, 625, 993
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	1 cut(s)	369
TasI	AATT	1 cut(s)	216
TatI	WGTACW	1 cut(s)	942
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	1 cut(s)	587
TscAI	CASTG	3 cut(s)	313, 511, 1006
TseFI	GTSAC	5 cut(s)	320, 389, 619, 779, 848
TseI	GCWGC	4 cut(s)	869, 872, 875, 878
Tsp45I	GTSAC	5 cut(s)	320, 389, 619, 779, 848
TspDTI	ATGAA	3 cut(s)	590, 873, 947
TspRI	CASTG	3 cut(s)	313, 511, 1006
VneI	GTGCAC	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	675
XceI	RCATGY	2 cut(s)	529, 1023
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	2 cut(s)	255, 653
Zsp2I	ATGCAT	3 cut(s)	240, 531, 1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.