FvH4_6g37481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002139
Physical Location & Seq
Reverse (-)
29517292 .. 29518233
942 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37481.t1

Sequence Viewer

Length: 375 bp
ATGAACTTGTACGTAAGACGCCAAACTGACAGTAGTTCTATGCAAACTGACCTTATGGGTTTTCTAAGCATTATCTGCTGCGGCTGTTCCAATGGACGCAAACACATCAACAAAGATGGTGGCAAGGAACAACCAAAGGAACAACAACAACAAAATCAAGATGCAAATAGCCAGGATAACGGCAAAGTTGGAGAAGATGTCAAAGGCAGCCCCCCACAAGACAGAGAAAACAAAGAAGCAACAAGCGAAAATATGCAGCAGATAGTTGAGTTTAACAAGACGAACCATATGGTTCCTGCTCATCCAATGGATCGATATCCACAATGGGATCACATGTTCAGTGACGAAAACCCAAATGCTTGTGTTATCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.1

Weight (kDa)

5.26

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AclWI GGATC 2 cut(s) 318, 336
AcyI GRCGYC 1 cut(s) 19
AfaI GTAC 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 333
AjnI CCWGG 1 cut(s) 171
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AlwI GGATC 2 cut(s) 318, 336
ApeKI GCWGC 3 cut(s) 78, 207, 256
BbvI GCAGC 3 cut(s) 65, 219, 268
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 173
BisI GCNGC 4 cut(s) 79, 82, 208, 257
BlsI GCNGC 4 cut(s) 80, 83, 209, 258
Bme1390I CCNGG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 151
Bsa29I ATCGAT 1 cut(s) 313
BsaAI YACGTR 1 cut(s) 13
BsaBI GATNNNNATC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 1 cut(s) 173
BseCI ATCGAT 1 cut(s) 313
BseGI GGATG 1 cut(s) 301
BseJI GATNNNNATC 1 cut(s) 315
BseXI GCAGC 3 cut(s) 65, 219, 268
BshVI ATCGAT 1 cut(s) 313
Bsp143I GATC 2 cut(s) 310, 328
BspACI CCGC 1 cut(s) 81
BspDI ATCGAT 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 2 cut(s) 318, 336
BssMI GATC 2 cut(s) 310, 328
BssNI GRCGYC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 19
BstAPI GCANNNNNTGC 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 2 cut(s) 313, 331
BstMBI GATC 2 cut(s) 310, 328
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 171
BstSNI TACGTA 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 65, 219, 268
Bsu15I ATCGAT 1 cut(s) 313
BsuTUI ATCGAT 1 cut(s) 313
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 346
ClaI ATCGAT 1 cut(s) 313
CseI GACGC 2 cut(s) 27, 105
Csp6I GTAC 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 1 cut(s) 334
CviJI RGCY 3 cut(s) 84, 171, 210
CviKI_1 RGCY 3 cut(s) 84, 171, 210
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 65
DpnI GATC 2 cut(s) 312, 330
DpnII GATC 2 cut(s) 310, 328
Eco105I TACGTA 1 cut(s) 13
Eco32I GATATC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 317
FaeI CATG 1 cut(s) 337
FaiI YATR 6 cut(s) 41, 56, 254, 288, 290, 335
FatI CATG 1 cut(s) 333
FauNDI CATATG 1 cut(s) 288
Fnu4HI GCNGC 4 cut(s) 79, 82, 208, 257
FokI GGATG 1 cut(s) 288
Fsp4HI GCNGC 4 cut(s) 79, 82, 208, 257
GluI GCNGC 4 cut(s) 79, 82, 208, 257
HgaI GACGC 2 cut(s) 27, 105
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 1 cut(s) 337
Hpy188III TCNNGA 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 3 cut(s) 43, 164, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 1 cut(s) 337
Kzo9I GATC 2 cut(s) 310, 328
LpnPI CCDG 3 cut(s) 158, 185, 309
Lsp1109I GCAGC 3 cut(s) 65, 219, 268
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 341
MalI GATC 2 cut(s) 312, 330
MboI GATC 2 cut(s) 310, 328
MboII GAAGA 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 169
MseI TTAA 2 cut(s) 273, 373
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeI CATATG 1 cut(s) 288
NdeII GATC 2 cut(s) 310, 328
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 337
PciI ACATGT 1 cut(s) 333
PkrI GCNGC 4 cut(s) 80, 83, 209, 258
Ppu21I YACGTR 1 cut(s) 13
PscI ACATGT 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 294
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 2 cut(s) 273, 373
SatI GCNGC 4 cut(s) 79, 82, 208, 257
Sau3AI GATC 2 cut(s) 310, 328
ScrFI CCNGG 1 cut(s) 173
SetI ASST 2 cut(s) 15, 54
SfaNI GCATC 1 cut(s) 151
SnaBI TACGTA 1 cut(s) 13
SsiI CCGC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 313
TauI GCSGC 1 cut(s) 84
Tru1I TTAA 2 cut(s) 273, 373
Tru9I TTAA 2 cut(s) 273, 373
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 3 cut(s) 78, 207, 256
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 346
XceI RCATGY 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.