Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Reverse (-)

13565780 .. 13569493

Gene Structure 3714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G148500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGGGAGGAGGAGAAAAAAATGGAGGAGAAAAAGCCAGAGGAGGTGAAGAAGCCAGAGGCAGAGGAGAAGAAAGAAGAGAAGAAAGAAGAAGAGAAAAAGCCTGAAGCTGAGGAAAAGAAGGAAGAGAAGAAGGCTGATGCTGCTCCTCCACTGCCACCGCCACCTCAAGAAATTGTGCTCAAAGTTTATATGCATTGTGAAGGCTGTGCTCGCAAGGTCAAGAGGCGTCTCAAAGGCTTTCAAGGGGTGGAAGATGTGAGCACAGATTGCAAGACTCACACGGTGGTTGTGAAGGGTGAGAAGGCTGATCCAATTAAGGTTCTTGAGAGAGTTCAGAGGAAGAGTCGTGGACAGGTTGAGCTTCTCTCTCCAATCCCAAAGCCACCAGCTGAGGAGAAGAAGCCTGAAGAGAAAGAGCAACCCAAGCCAGAGGAAAAGAAAGAAGAGCCTGTGGTTATCACAGTGGTGCTGAAGGTTCACATGCATTGTGATGCTTGTGCACAAGAAATCAAGAAACGCATTCTGAGAATGAAAGGAGTGGAATCTGCTGAACCAGATCTAAAGAGCTCAGAAGTGACAGTAAAGGGTGTGTTTGATCCACCCCAGCTAGTAGAGTATGTGCACAAAAGGACTGGGAAGCATGCTTCCATTGTGAAACAAGAACCAGAAAAGAAAGACAAAGAAGAAGCCAAAGAGGAGGAGAAAAAAGGTGGTGAAGAAGGTGACAAAGATAAGAAAGGTAAAGATGAAGAGGCAAAACCAGAAGAGAAGAAAGGTGATGAAGCTCCACCTGCTGCTGCTGCTGCTCCTGATGCTGCTGCTGCTGCAGAAGGAGGAGCTGCCACAGAAGAGACCAAGGTGGTGGAGCTCATGAAGAAAAATGAATATTATTATTACCCACCAAGGTATGCCATGGAGTTGTATGCCTACCCACCTCAGATCTTCAGTGATGAGAACCCAAATGCCTGCTCTGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

328

Amino Acids

36.86

Weight (kDa)

5.65

Isoelectric Point (pI)

64.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	802
Acc36I	ACCTGC	1 cut(s)	802
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	305, 593
AcuI	CTGAAG	4 cut(s)	126, 429, 494, 931
AcyI	GRCGYC	1 cut(s)	229
AdeI	CACNNNGTG	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	245
AleI	CACNNNNGTG	1 cut(s)	467
AluBI	AGCT	8 cut(s)	110, 364, 392, 570, 610, 788, 842, 871
AluI	AGCT	8 cut(s)	110, 364, 392, 570, 610, 788, 842, 871
Alw21I	GWGCWC	7 cut(s)	183, 214, 266, 505, 572, 627, 873
Alw26I	GTCTC	2 cut(s)	236, 848
Alw44I	GTGCAC	2 cut(s)	501, 623
AlwI	GGATC	2 cut(s)	305, 593
ApaLI	GTGCAC	2 cut(s)	501, 623
AsuHPI	GGTGA	5 cut(s)	58, 311, 728, 737, 791
BaeGI	GKGCMC	2 cut(s)	505, 627
BanII	GRGCYC	2 cut(s)	572, 873
Bbv12I	GWGCWC	7 cut(s)	183, 214, 266, 505, 572, 627, 873
BbvCI	CCTCAGC	2 cut(s)	111, 393
BcoDI	GTCTC	2 cut(s)	236, 848
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	828
BfuAI	ACCTGC	1 cut(s)	802
BglII	AGATCT	2 cut(s)	559, 942
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	3 cut(s)	130, 484, 805
BmuI	ACTGGG	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
Bpu10I	CCTNAGC	2 cut(s)	111, 393
BpuEI	CTTGAG	2 cut(s)	153, 347
BsaHI	GRCGYC	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	3 cut(s)	858, 905, 915
Bse1I	ACTGG	1 cut(s)	640
BseDI	CCNNGG	3 cut(s)	858, 905, 915
BseMII	CTCAG	5 cut(s)	102, 384, 518, 585, 953
BseNI	ACTGG	1 cut(s)	640
BseSI	GKGCMC	2 cut(s)	505, 627
BseYI	CCCAGC	1 cut(s)	606
BsiHKAI	GWGCWC	7 cut(s)	183, 214, 266, 505, 572, 627, 873
BsmAI	GTCTC	2 cut(s)	236, 848
BsmBI	CGTCTC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	522
Bso31I	GGTCTC	1 cut(s)	848
Bsp1286I	GDGCHC	7 cut(s)	183, 214, 266, 505, 572, 627, 873
Bsp143I	GATC	4 cut(s)	310, 559, 598, 942
Bsp19I	CCATGG	1 cut(s)	915
BspACI	CCGC	1 cut(s)	161
BspCNI	CTCAG	5 cut(s)	103, 385, 519, 584, 952
BspHI	TCATGA	1 cut(s)	873
BspMAI	CTGCAG	1 cut(s)	832
BspMI	ACCTGC	1 cut(s)	802
BspPI	GGATC	2 cut(s)	305, 593
BspQI	GCTCTTC	1 cut(s)	441
BspTNI	GGTCTC	1 cut(s)	848
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	3 cut(s)	858, 905, 915
BssMI	GATC	4 cut(s)	310, 559, 598, 942
BssNI	GRCGYC	1 cut(s)	229
BssT1I	CCWWGG	3 cut(s)	858, 905, 915
Bst4CI	ACNGT	3 cut(s)	286, 466, 583
Bst6I	CTCTTC	9 cut(s)	72, 87, 120, 338, 405, 441, 747, 762, 846
BstACI	GRCGYC	1 cut(s)	229
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstC8I	GCNNGC	3 cut(s)	214, 645, 970
BstDEI	CTNAG	5 cut(s)	111, 393, 527, 571, 939
BstDSI	CCRYGG	1 cut(s)	915
BstKTI	GATC	4 cut(s)	313, 562, 601, 945
BstMAI	GTCTC	2 cut(s)	236, 848
BstMBI	GATC	4 cut(s)	310, 559, 598, 942
BstNSI	RCATGY	2 cut(s)	487, 647
BstSFI	CTRYAG	1 cut(s)	828
BstSLI	GKGCMC	2 cut(s)	505, 627
BstX2I	RGATCY	2 cut(s)	559, 942
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstYI	RGATCY	2 cut(s)	559, 942
BtgI	CCRYGG	1 cut(s)	915
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	3 cut(s)	152, 471, 955
BveI	ACCTGC	1 cut(s)	802
Cac8I	GCNNGC	3 cut(s)	214, 645, 970
CciI	TCATGA	1 cut(s)	873
CseI	GACGC	1 cut(s)	218
CviAII	CATG	4 cut(s)	484, 644, 874, 916
DdeI	CTNAG	5 cut(s)	111, 393, 527, 571, 939
DpnI	GATC	4 cut(s)	312, 561, 600, 944
DpnII	GATC	4 cut(s)	310, 559, 598, 942
DraIII	CACNNNGTG	1 cut(s)	286
Eam1104I	CTCTTC	9 cut(s)	72, 87, 120, 338, 405, 441, 747, 762, 846
EarI	CTCTTC	9 cut(s)	72, 87, 120, 338, 405, 441, 747, 762, 846
Ecl136II	GAGCTC	2 cut(s)	570, 871
Eco130I	CCWWGG	3 cut(s)	858, 905, 915
Eco24I	GRGCYC	2 cut(s)	572, 873
Eco31I	GGTCTC	1 cut(s)	848
Eco53kI	GAGCTC	2 cut(s)	570, 871
Eco57I	CTGAAG	4 cut(s)	126, 429, 494, 931
EcoICRI	GAGCTC	2 cut(s)	570, 871
EcoT14I	CCWWGG	3 cut(s)	858, 905, 915
EcoT22I	ATGCAT	2 cut(s)	198, 489
EcoT38I	GRGCYC	2 cut(s)	572, 873
ErhI	CCWWGG	3 cut(s)	858, 905, 915
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	4 cut(s)	487, 647, 877, 919
FatI	CATG	4 cut(s)	483, 643, 873, 915
FriOI	GRGCYC	2 cut(s)	572, 873
FspBI	CTAG	1 cut(s)	611
GsaI	CCCAGC	1 cut(s)	610
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	4 cut(s)	487, 647, 877, 919
HinfI	GANTC	3 cut(s)	277, 346, 545
HphI	GGTGA	5 cut(s)	58, 311, 728, 737, 791
Hpy166II	GTNNAC	4 cut(s)	353, 481, 503, 625
Hpy188I	TCNGA	4 cut(s)	339, 528, 574, 942
Hpy188III	TCNNGA	6 cut(s)	170, 223, 326, 514, 812, 874
Hpy8I	GTNNAC	4 cut(s)	353, 481, 503, 625
HpyAV	CCTTC	8 cut(s)	115, 127, 197, 289, 298, 469, 716, 827
HpyCH4III	ACNGT	3 cut(s)	286, 466, 583
HpyCH4V	TGCA	6 cut(s)	196, 273, 487, 503, 625, 830
HpyF3I	CTNAG	5 cut(s)	111, 393, 527, 571, 939
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	4 cut(s)	487, 647, 877, 919
Kzo9I	GATC	4 cut(s)	310, 559, 598, 942
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	5 cut(s)	151, 793, 814, 839, 868
LweI	GCATC	3 cut(s)	130, 484, 805
MaeI	CTAG	1 cut(s)	611
MaeIII	GTNAC	2 cut(s)	577, 725
MalI	GATC	4 cut(s)	312, 561, 600, 944
MboI	GATC	4 cut(s)	310, 559, 598, 942
MflI	RGATCY	2 cut(s)	559, 942
MhlI	GDGCHC	7 cut(s)	183, 214, 266, 505, 572, 627, 873
MluCI	AATT	2 cut(s)	174, 315
MlyI	GAGTC	2 cut(s)	271, 355
Mph1103I	ATGCAT	2 cut(s)	198, 489
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	467, 492
MspA1I	CMGCKG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	522
NcoI	CCATGG	1 cut(s)	915
NdeII	GATC	4 cut(s)	310, 559, 598, 942
NlaIII	CATG	4 cut(s)	487, 647, 877, 919
NmuCI	GTSAC	2 cut(s)	577, 725
NsiI	ATGCAT	2 cut(s)	198, 489
NspI	RCATGY	2 cut(s)	487, 647
OliI	CACNNNNGTG	1 cut(s)	467
PaeI	GCATGC	1 cut(s)	647
PagI	TCATGA	1 cut(s)	873
PaqCI	CACCTGC	1 cut(s)	802
PciSI	GCTCTTC	1 cut(s)	441
PctI	GAATGC	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	545
PleI	GAGTC	2 cut(s)	271, 354
PpsI	GAGTC	2 cut(s)	271, 354
Psp124BI	GAGCTC	2 cut(s)	572, 873
PspFI	CCCAGC	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	832
PsuI	RGATCY	2 cut(s)	559, 942
PvuII	CAGCTG	1 cut(s)	392
RseI	CAYNNNNRTG	2 cut(s)	467, 492
SacI	GAGCTC	2 cut(s)	572, 873
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	4 cut(s)	310, 559, 598, 942
SchI	GAGTC	2 cut(s)	271, 355
SduI	GDGCHC	7 cut(s)	183, 214, 266, 505, 572, 627, 873
SfaNI	GCATC	3 cut(s)	130, 484, 805
SfcI	CTRYAG	1 cut(s)	828
SmiMI	CAYNNNNRTG	2 cut(s)	467, 492
SmlI	CTYRAG	2 cut(s)	168, 326
SmoI	CTYRAG	2 cut(s)	168, 326
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	2 cut(s)	174, 315
SsiI	CCGC	1 cut(s)	161
SspI	AATATT	1 cut(s)	890
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	2 cut(s)	572, 873
StyI	CCWWGG	3 cut(s)	858, 905, 915
TaaI	ACNGT	3 cut(s)	286, 466, 583
TasI	AATT	2 cut(s)	174, 315
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	3 cut(s)	159, 471, 955
TseFI	GTSAC	2 cut(s)	577, 725
Tsp45I	GTSAC	2 cut(s)	577, 725
TspDTI	ATGAA	5 cut(s)	548, 765, 798, 890, 900
TspRI	CASTG	3 cut(s)	159, 471, 955
VneI	GTGCAC	2 cut(s)	501, 623
XceI	RCATGY	2 cut(s)	487, 647
XspI	CTAG	1 cut(s)	611
Zsp2I	ATGCAT	2 cut(s)	198, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.