Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Forward (+)

4967218 .. 4970120

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08650.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGGGAGAAGGAGAAGAAGCCCGAGGAGAAGAAAATGGAGGAGAAGAAGCCTGAGGAGGTGAAAAAGCCTGAAGAGGAAAAGAAGGCTGAGGAGAATAAGAAGGAAGAGAAACCAGCTGAGGAGAAGAAGGAAGAGAAGAAAGCTGAAGAGGGTAAGGATGGCAAAGAGGCCAAAGAGGGTGATGCTCCGCCACCTCCGCCACCACCTCAAGAAATTGTGCTCAGAGTCTATATGCATTGTGAAGGTTGTGCTAGAAAGGTCAAGAGGTGCCTCAAAGGCTTTCAAGGGGTGGAAGATGTGAGCACAGATTGCAAGAGTCACAAGGTGGTTGTCAAGGGAGAGAAGGCTGATCCAATCAAGGTTCTTGAGAGAGTTCAGAGGAAGAGTCATAGACAAGTTGAGCTTCTCTCCCCAATCCCAAAACCACCAGCTGAGGAGGAGAAGAAGCCGGAAGAGAAACCCAAGCCGGAGGAAAAGAAAGAAGAGCCTCCTCAGGTCATCTCTGTGGTGCTCAAGGTTCACATGCATTGCGAGGCTTGTGCACAAGAAATCAAGAAACGCATTCAGAGGATGAAAGGAGTGGAATCAGCAGAACCAGATCTAAAGGGATCACAAGTGACAGTAAAGGGTGTGTTTGATCCGGCCAAGCTAGTTGAGTACGTGTACAAAAGAACCGGCAAGCAGGCAGAGATAGTGAAGCAAGAGCCGGAGAAGAAGGCTGACAAAGAAGAAGCCAAAGAGGGAAGTAAAGACGGGAAGAAAGGTGGTGAAGAAGGTGGCAAGGACAAGAAAAGTGGTGATGGTGGAGGTGAGGCTGCACCACCAGCTGAAGATAACAAAGAAAAGAAAGGTGACGGCAATGAAGGTGGTGCTGCAGCTTCTGTTGCACCAGAAGGCGGAGCAGTTACAGAAGAGACCAAGGTTGGTGAGCTCATGAAGATAAACGAGTACAACTACTACCCACCAAGGTATGCCATGGAACTGTACGCCTACCCTCCACAGATCTTCAGTGATGAGAACCCAAATGCATGTGCTGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

349

Amino Acids

38.69

Weight (kDa)

6.03

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	75 - 127	1.9e-11	Heavy-metal-associated domain
HMA	PF00403	172 - 218	9.1e-07	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AciI	CCGC	3 cut(s)	191, 200, 900
AclWI	GGATC	3 cut(s)	347, 619, 635
AcoI	YGGCCR	1 cut(s)	645
AcuI	CTGAAG	4 cut(s)	93, 168, 852, 994
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	4 cut(s)	662, 668, 953, 989
AfiI	CCNNNNNNNGG	1 cut(s)	899
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	1 cut(s)	287
AluBI	AGCT	8 cut(s)	119, 146, 406, 434, 652, 830, 881, 934
AluI	AGCT	8 cut(s)	119, 146, 406, 434, 652, 830, 881, 934
Alw21I	GWGCWC	5 cut(s)	225, 308, 516, 547, 936
Alw26I	GTCTC	1 cut(s)	911
Alw44I	GTGCAC	1 cut(s)	543
AlwI	GGATC	3 cut(s)	347, 619, 635
AlwNI	CAGNNNCTG	1 cut(s)	884
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	171, 645
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	3 cut(s)	818, 875, 878
AsuHPI	GGTGA	7 cut(s)	73, 194, 782, 812, 824, 866, 941
AvaI	CYCGRG	1 cut(s)	23
AxyI	CCTNAGG	2 cut(s)	54, 495
BaeGI	GKGCMC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	936
Bbv12I	GWGCWC	5 cut(s)	225, 308, 516, 547, 936
BbvCI	CCTCAGC	3 cut(s)	90, 120, 435
BbvI	GCAGC	3 cut(s)	805, 862, 890
BccI	CCATC	2 cut(s)	155, 797
BceAI	ACGGC	1 cut(s)	874
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BcoDI	GTCTC	1 cut(s)	911
BfaI	CTAG	2 cut(s)	255, 653
BfmI	CTRYAG	1 cut(s)	876
BglI	GCCNNNNNGGC	1 cut(s)	279
BglII	AGATCT	2 cut(s)	601, 1005
BisI	GCNGC	3 cut(s)	819, 876, 879
BlsI	GCNGC	3 cut(s)	820, 877, 880
BmeT110I	CYCGRG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	272
BmsI	GCATC	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
Bpu10I	CCTNAGC	3 cut(s)	90, 120, 435
BpuEI	CTTGAG	3 cut(s)	195, 389, 500
BsaAI	YACGTR	1 cut(s)	664
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	4 cut(s)	24, 921, 968, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	899
Bse118I	RCCGGY	1 cut(s)	677
Bse21I	CCTNAGG	2 cut(s)	54, 495
Bse3DI	GCAATG	2 cut(s)	529, 868
BseDI	CCNNGG	4 cut(s)	24, 921, 968, 978
BseGI	GGATG	2 cut(s)	166, 579
BseLI	CCNNNNNNNGG	1 cut(s)	899
BseMI	GCAATG	2 cut(s)	529, 868
BseMII	CTCAG	6 cut(s)	45, 81, 111, 238, 426, 509
BseRI	GAGGAG	8 cut(s)	41, 56, 71, 107, 137, 452, 455, 483
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	3 cut(s)	805, 862, 890
BsgI	GTGCAG	1 cut(s)	804
BshFI	GGCC	2 cut(s)	173, 647
BshNI	GGYRCC	1 cut(s)	270
BsiHKAI	GWGCWC	5 cut(s)	225, 308, 516, 547, 936
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	5 cut(s)	452, 470, 644, 678, 710
BslI	CCNNNNNNNGG	1 cut(s)	899
BsmAI	GTCTC	1 cut(s)	911
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	2 cut(s)	173, 647
Bso31I	GGTCTC	1 cut(s)	911
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	5 cut(s)	225, 308, 516, 547, 936
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	5 cut(s)	352, 601, 611, 640, 1005
Bsp19I	CCATGG	1 cut(s)	978
BspACI	CCGC	3 cut(s)	191, 200, 900
BspANI	GGCC	2 cut(s)	173, 647
BspCNI	CTCAG	6 cut(s)	46, 82, 112, 237, 427, 508
BspHI	TCATGA	1 cut(s)	936
BspLI	GGNNCC	1 cut(s)	272
BspMAI	CTGCAG	1 cut(s)	880
BspPI	GGATC	3 cut(s)	347, 619, 635
BspQI	GCTCTTC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	911
BsrDI	GCAATG	2 cut(s)	529, 868
BsrFI	RCCGGY	1 cut(s)	677
BsrGI	TGTACA	1 cut(s)	666
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	4 cut(s)	24, 921, 968, 978
BssMI	GATC	5 cut(s)	352, 601, 611, 640, 1005
BssT1I	CCWWGG	3 cut(s)	921, 968, 978
Bst4CI	ACNGT	2 cut(s)	625, 987
Bst6I	CTCTTC	8 cut(s)	69, 102, 129, 144, 380, 450, 480, 909
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	666
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	2 cut(s)	683, 687
BstDEI	CTNAG	6 cut(s)	54, 90, 120, 224, 435, 495
BstDSI	CCRYGG	1 cut(s)	978
BstF5I	GGATG	2 cut(s)	166, 579
BstKTI	GATC	5 cut(s)	355, 604, 614, 643, 1008
BstMAI	GTCTC	1 cut(s)	911
BstMBI	GATC	5 cut(s)	352, 601, 611, 640, 1005
BstMWI	GCNNNNNNNGC	5 cut(s)	199, 279, 312, 827, 887
BstNSI	RCATGY	2 cut(s)	529, 1035
BstSFI	CTRYAG	1 cut(s)	876
BstSLI	GKGCMC	1 cut(s)	547
BstV1I	GCAGC	3 cut(s)	805, 862, 890
BstX2I	RGATCY	2 cut(s)	601, 1005
BstYI	RGATCY	2 cut(s)	601, 1005
Bsu36I	CCTNAGG	2 cut(s)	54, 495
BsuRI	GGCC	2 cut(s)	173, 647
BtgI	CCRYGG	1 cut(s)	978
BtsCI	GGATG	2 cut(s)	166, 579
BtsIMutI	CAGTG	1 cut(s)	1018
Cac8I	GCNNGC	2 cut(s)	683, 687
CaiI	CAGNNNCTG	1 cut(s)	884
CciI	TCATGA	1 cut(s)	936
Cfr10I	RCCGGY	1 cut(s)	677
Csp6I	GTAC	4 cut(s)	661, 667, 952, 988
CspCI	CAANNNNNGTGG	4 cut(s)	778, 813, 850, 885
CviAII	CATG	4 cut(s)	526, 937, 979, 1032
CviQI	GTAC	4 cut(s)	661, 667, 952, 988
DdeI	CTNAG	6 cut(s)	54, 90, 120, 224, 435, 495
DpnI	GATC	5 cut(s)	354, 603, 613, 642, 1007
DpnII	GATC	5 cut(s)	352, 601, 611, 640, 1005
DraIII	CACNNNGTG	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	8 cut(s)	69, 102, 129, 144, 380, 450, 480, 909
EarI	CTCTTC	8 cut(s)	69, 102, 129, 144, 380, 450, 480, 909
EciI	GGCGGA	3 cut(s)	180, 189, 915
Ecl136II	GAGCTC	1 cut(s)	934
Eco130I	CCWWGG	3 cut(s)	921, 968, 978
Eco24I	GRGCYC	1 cut(s)	936
Eco31I	GGTCTC	1 cut(s)	911
Eco53kI	GAGCTC	1 cut(s)	934
Eco57I	CTGAAG	4 cut(s)	93, 168, 852, 994
Eco81I	CCTNAGG	2 cut(s)	54, 495
Eco88I	CYCGRG	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	934
EcoT14I	CCWWGG	3 cut(s)	921, 968, 978
EcoT22I	ATGCAT	3 cut(s)	240, 531, 1033
EcoT38I	GRGCYC	1 cut(s)	936
ErhI	CCWWGG	3 cut(s)	921, 968, 978
FaeI	CATG	4 cut(s)	529, 940, 982, 1035
FaiI	YATR	9 cut(s)	234, 236, 393, 527, 938, 975, 980, 1033, 1043
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	4 cut(s)	525, 936, 978, 1031
Fnu4HI	GCNGC	3 cut(s)	819, 876, 879
FokI	GGATG	2 cut(s)	173, 586
FriOI	GRGCYC	1 cut(s)	936
Fsp4HI	GCNGC	3 cut(s)	819, 876, 879
FspBI	CTAG	2 cut(s)	255, 653
GluI	GCNGC	3 cut(s)	819, 876, 879
HaeIII	GGCC	2 cut(s)	173, 647
HapII	CCGG	5 cut(s)	452, 470, 644, 678, 710
Hin1II	CATG	4 cut(s)	529, 940, 982, 1035
HinfI	GANTC	4 cut(s)	228, 319, 388, 587
HpaII	CCGG	5 cut(s)	452, 470, 644, 678, 710
HphI	GGTGA	7 cut(s)	73, 194, 782, 812, 824, 866, 941
Hpy166II	GTNNAC	3 cut(s)	523, 545, 667
Hpy188I	TCNGA	3 cut(s)	227, 381, 570
Hpy188III	TCNNGA	5 cut(s)	212, 265, 368, 556, 937
Hpy8I	GTNNAC	3 cut(s)	523, 545, 667
HpyCH4III	ACNGT	2 cut(s)	625, 987
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	8 cut(s)	238, 315, 529, 545, 821, 878, 890, 1031
HpyF10VI	GCNNNNNNNGC	5 cut(s)	199, 279, 312, 827, 887
HpyF3I	CTNAG	6 cut(s)	54, 90, 120, 224, 435, 495
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	4 cut(s)	529, 940, 982, 1035
Kzo9I	GATC	5 cut(s)	352, 601, 611, 640, 1005
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	2 cut(s)	193, 902
Lsp1109I	GCAGC	3 cut(s)	805, 862, 890
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	255, 653
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	4 cut(s)	320, 619, 854, 907
MalI	GATC	5 cut(s)	354, 603, 613, 642, 1007
MboI	GATC	5 cut(s)	352, 601, 611, 640, 1005
MflI	RGATCY	2 cut(s)	601, 1005
MhlI	GDGCHC	5 cut(s)	225, 308, 516, 547, 936
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	3 cut(s)	237, 328, 397
Mph1103I	ATGCAT	3 cut(s)	240, 531, 1033
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	3 cut(s)	119, 434, 830
MspI	CCGG	5 cut(s)	452, 470, 644, 678, 710
Mva1269I	GAATGC	1 cut(s)	564
MwoI	GCNNNNNNNGC	5 cut(s)	199, 279, 312, 827, 887
NcoI	CCATGG	1 cut(s)	978
NdeII	GATC	5 cut(s)	352, 601, 611, 640, 1005
NlaIII	CATG	4 cut(s)	529, 940, 982, 1035
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	3 cut(s)	320, 619, 854
NsiI	ATGCAT	3 cut(s)	240, 531, 1033
NspI	RCATGY	2 cut(s)	529, 1035
PagI	TCATGA	1 cut(s)	936
PciSI	GCTCTTC	1 cut(s)	480
PctI	GAATGC	1 cut(s)	564
PfeI	GAWTC	1 cut(s)	587
PkrI	GCNGC	3 cut(s)	820, 877, 880
PleI	GAGTC	3 cut(s)	236, 327, 396
PpsI	GAGTC	3 cut(s)	236, 327, 396
Ppu21I	YACGTR	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	936
PspN4I	GGNNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	880
PstNI	CAGNNNCTG	1 cut(s)	884
PsuI	RGATCY	2 cut(s)	601, 1005
PvuII	CAGCTG	3 cut(s)	119, 434, 830
RsaI	GTAC	4 cut(s)	662, 668, 953, 989
RsaNI	GTAC	4 cut(s)	661, 667, 952, 988
RseI	CAYNNNNRTG	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	936
SapI	GCTCTTC	1 cut(s)	480
SatI	GCNGC	3 cut(s)	819, 876, 879
Sau3AI	GATC	5 cut(s)	352, 601, 611, 640, 1005
SchI	GAGTC	3 cut(s)	237, 328, 397
SduI	GDGCHC	5 cut(s)	225, 308, 516, 547, 936
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	3 cut(s)	210, 368, 515
SmoI	CTYRAG	3 cut(s)	210, 368, 515
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	3 cut(s)	191, 200, 900
SspMI	CTAG	2 cut(s)	255, 653
SstI	GAGCTC	1 cut(s)	936
StyI	CCWWGG	3 cut(s)	921, 968, 978
TaaI	ACNGT	2 cut(s)	625, 987
TaiI	ACGT	1 cut(s)	666
TasI	AATT	1 cut(s)	216
TatI	WGTACW	2 cut(s)	666, 951
TfiI	GAWTC	1 cut(s)	587
TscAI	CASTG	1 cut(s)	1018
TseFI	GTSAC	3 cut(s)	320, 619, 854
TseI	GCWGC	3 cut(s)	818, 875, 878
Tsp45I	GTSAC	3 cut(s)	320, 619, 854
TspDTI	ATGAA	3 cut(s)	590, 879, 953
TspRI	CASTG	1 cut(s)	1018
VneI	GTGCAC	1 cut(s)	543
XceI	RCATGY	2 cut(s)	529, 1035
XspI	CTAG	2 cut(s)	255, 653
Zsp2I	ATGCAT	3 cut(s)	240, 531, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.