Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Reverse (-)

8485328 .. 8487740

Gene Structure 2413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G009060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAGGAGAAGAAGCCTGAGGAGGTGAAAAAGCCTGAAGAGGAAAAGAAAGCTGAGGAGAAGAAGGAAGAGAAACCAGCTGAGGAGAAAAAGGAAGAGAAGAAAGCTGGGGAGGGTAAAGATGGCAAAGAGGCCAAAGAGGGTGATGCTCCACCACCACCACCGCCGCCACCTCAAGAAATTGTGCTCAGAGTCTATATGCATTGTGAAGGTTGTGCTAGAAAGGTCAAGAGGTGTCTCAAAGGCTTTCAAGGGGTGGAAGATGTGAGCACTGATTGCAAGAGTCACAAGGTGGTTGTCAAGGGCGAGAAGGCTGATCCAAGCAAGGTTCTCGAGAGAGTTCAGAGGAAGAGTCACAGACAAGTGGAGCTTCTCTCCCCAATCCCAAAACCACCAGCTGAGGAGGAGAAGAAGCCTGAAGAGAAACCCAAGCCAGAGGAGAAGAAAGAAGAGCCTCCTCAGGTCATCACTGTGGTGCTCAAGGTTCACATGCATTGCGAGGCTTGTGCACAAGAAATCAAGAAACGCATACAGAGGATGAAAGGAGTGGAATCAGCAGAACCAGATCTAAAGGGCTCACAGGTGACAGTAAAGGGTGTGTTTGATCCGGCCAAGCTAGTTGAGTACGTGAACAAAAGGACCGGCAAGCACGCAGAGATAGTGAAGCAAGAACCGGAAAAGAAGGCTGACAAAGAAGAAGCCAAAGGGGAAGTAAAGATGAGAAGAAAGGTGGTGAAGAAGGTGACAAGGACAAGAAGAGTGGTGGTGGAGGTGAGGCCGCACCAGCAGAAGAGAACAAAGACAAGAAAGGTGACGGCAATGAAGGCGGTGCTGCAGCTGCTGCTACACCGGATGGCGGGGCGGTTACAGAAGAGACCAAGGTTGTTGAGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

298

Amino Acids

34.06

Weight (kDa)

9.63

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	63 - 116	8e-12	Heavy-metal-associated domain
HMA	PF00403	160 - 216	3.7e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	164, 167, 779, 827, 857, 862
AclWI	GGATC	2 cut(s)	311, 599
AcoI	YGGCCR	1 cut(s)	609
AcuI	CTGAAG	2 cut(s)	57, 438
AdeI	CACNNNGTG	1 cut(s)	292
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	1 cut(s)	856
AgsI	TTSAA	1 cut(s)	251
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	8 cut(s)	53, 80, 107, 370, 398, 616, 838, 891
AluI	AGCT	8 cut(s)	53, 80, 107, 370, 398, 616, 838, 891
Alw21I	GWGCWC	5 cut(s)	189, 272, 480, 511, 893
Alw26I	GTCTC	2 cut(s)	242, 868
Alw44I	GTGCAC	1 cut(s)	507
AlwI	GGATC	2 cut(s)	311, 599
AlwNI	CAGNNNCTG	1 cut(s)	841
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	132, 609, 776
ApaLI	GTGCAC	1 cut(s)	507
ApeKI	GCWGC	4 cut(s)	832, 835, 838, 841
AspS9I	GGNCC	1 cut(s)	639
AsuHPI	GGTGA	7 cut(s)	37, 155, 595, 745, 754, 784, 823
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	639
AxyI	CCTNAGG	2 cut(s)	18, 459
BaeGI	GKGCMC	1 cut(s)	511
BanII	GRGCYC	2 cut(s)	578, 893
Bbv12I	GWGCWC	5 cut(s)	189, 272, 480, 511, 893
BbvCI	CCTCAGC	3 cut(s)	54, 81, 399
BbvI	GCAGC	4 cut(s)	819, 825, 828, 847
BccI	CCATC	2 cut(s)	116, 847
BceAI	ACGGC	1 cut(s)	831
BcgI	CGANNNNNNTGC	4 cut(s)	313, 347, 488, 522
BcoDI	GTCTC	2 cut(s)	242, 868
BfaI	CTAG	2 cut(s)	219, 617
BfmI	CTRYAG	1 cut(s)	833
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	6 cut(s)	167, 779, 833, 836, 839, 842
BlsI	GCNGC	6 cut(s)	168, 780, 834, 837, 840, 843
Bme18I	GGWCC	1 cut(s)	639
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	639
BmsI	GCATC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
Bpu10I	CCTNAGC	3 cut(s)	54, 81, 399
BpuEI	CTTGAG	2 cut(s)	159, 464
BsaAI	YACGTR	1 cut(s)	628
BsaI	GGTCTC	1 cut(s)	868
BsaJI	CCNNGG	1 cut(s)	878
BsaWI	WCCGGW	2 cut(s)	673, 849
Bsc4I	CCNNNNNNNGG	1 cut(s)	856
Bse118I	RCCGGY	1 cut(s)	641
Bse21I	CCTNAGG	2 cut(s)	18, 459
Bse3DI	GCAATG	2 cut(s)	493, 825
BseDI	CCNNGG	1 cut(s)	878
BseGI	GGATG	2 cut(s)	543, 858
BseLI	CCNNNNNNNGG	1 cut(s)	856
BseMI	GCAATG	2 cut(s)	493, 825
BseMII	CTCAG	6 cut(s)	9, 45, 72, 202, 390, 473
BseRI	GAGGAG	8 cut(s)	20, 35, 71, 98, 416, 419, 447, 452
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	4 cut(s)	819, 825, 828, 847
BseYI	CCCAGC	1 cut(s)	107
BshFI	GGCC	3 cut(s)	134, 611, 778
BsiHKAI	GWGCWC	5 cut(s)	189, 272, 480, 511, 893
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	4 cut(s)	608, 642, 674, 850
BslI	CCNNNNNNNGG	1 cut(s)	856
BsmAI	GTCTC	2 cut(s)	242, 868
BsnI	GGCC	3 cut(s)	134, 611, 778
Bso31I	GGTCTC	1 cut(s)	868
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	6 cut(s)	189, 272, 480, 511, 578, 893
Bsp143I	GATC	3 cut(s)	316, 565, 604
BspACI	CCGC	6 cut(s)	164, 167, 779, 827, 857, 862
BspANI	GGCC	3 cut(s)	134, 611, 778
BspCNI	CTCAG	6 cut(s)	10, 46, 73, 201, 391, 472
BspHI	TCATGA	1 cut(s)	893
BspMAI	CTGCAG	1 cut(s)	837
BspPI	GGATC	2 cut(s)	311, 599
BspQI	GCTCTTC	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	868
BsrDI	GCAATG	2 cut(s)	493, 825
BsrFI	RCCGGY	1 cut(s)	641
BssAI	RCCGGY	1 cut(s)	641
BssECI	CCNNGG	1 cut(s)	878
BssMI	GATC	3 cut(s)	316, 565, 604
BssT1I	CCWWGG	1 cut(s)	878
Bst4CI	ACNGT	2 cut(s)	472, 589
Bst6I	CTCTTC	9 cut(s)	33, 63, 90, 344, 414, 444, 751, 785, 866
BstAPI	GCANNNNNTGC	2 cut(s)	276, 841
BstBAI	YACGTR	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	647, 651
BstDEI	CTNAG	6 cut(s)	18, 54, 81, 188, 399, 459
BstF5I	GGATG	2 cut(s)	543, 858
BstKTI	GATC	3 cut(s)	319, 568, 607
BstMAI	GTCTC	2 cut(s)	242, 868
BstMBI	GATC	3 cut(s)	316, 565, 604
BstMWI	GCNNNNNNNGC	5 cut(s)	276, 784, 824, 838, 841
BstNSI	RCATGY	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	833
BstSLI	GKGCMC	1 cut(s)	511
BstV1I	GCAGC	4 cut(s)	819, 825, 828, 847
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
Bsu36I	CCTNAGG	2 cut(s)	18, 459
BsuRI	GGCC	3 cut(s)	134, 611, 778
BtsCI	GGATG	2 cut(s)	543, 858
BtsIMutI	CAGTG	2 cut(s)	270, 468
Cac8I	GCNNGC	2 cut(s)	647, 651
CaiI	CAGNNNCTG	1 cut(s)	841
CciI	TCATGA	1 cut(s)	893
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	639
Csp6I	GTAC	1 cut(s)	625
CspCI	CAANNNNNGTGG	2 cut(s)	741, 776
CviAII	CATG	2 cut(s)	490, 894
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	6 cut(s)	18, 54, 81, 188, 399, 459
DpnI	GATC	3 cut(s)	318, 567, 606
DpnII	GATC	3 cut(s)	316, 565, 604
DraIII	CACNNNGTG	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	9 cut(s)	33, 63, 90, 344, 414, 444, 751, 785, 866
EarI	CTCTTC	9 cut(s)	33, 63, 90, 344, 414, 444, 751, 785, 866
Ecl136II	GAGCTC	1 cut(s)	891
Eco130I	CCWWGG	1 cut(s)	878
Eco24I	GRGCYC	2 cut(s)	578, 893
Eco31I	GGTCTC	1 cut(s)	868
Eco47I	GGWCC	1 cut(s)	639
Eco53kI	GAGCTC	1 cut(s)	891
Eco57I	CTGAAG	2 cut(s)	57, 438
Eco81I	CCTNAGG	2 cut(s)	18, 459
Eco88I	CYCGRG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	891
EcoT14I	CCWWGG	1 cut(s)	878
EcoT22I	ATGCAT	2 cut(s)	204, 495
EcoT38I	GRGCYC	2 cut(s)	578, 893
ErhI	CCWWGG	1 cut(s)	878
FaeI	CATG	2 cut(s)	493, 897
FaiI	YATR	5 cut(s)	198, 200, 491, 530, 895
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	2 cut(s)	489, 893
FauI	CCCGC	1 cut(s)	850
Fnu4HI	GCNGC	6 cut(s)	167, 779, 833, 836, 839, 842
FokI	GGATG	2 cut(s)	550, 865
FriOI	GRGCYC	2 cut(s)	578, 893
Fsp4HI	GCNGC	6 cut(s)	167, 779, 833, 836, 839, 842
FspBI	CTAG	2 cut(s)	219, 617
GluI	GCNGC	6 cut(s)	167, 779, 833, 836, 839, 842
GsaI	CCCAGC	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	134, 611, 778
HapII	CCGG	4 cut(s)	608, 642, 674, 850
Hin1II	CATG	2 cut(s)	493, 897
HinfI	GANTC	4 cut(s)	192, 283, 352, 551
HpaII	CCGG	4 cut(s)	608, 642, 674, 850
HphI	GGTGA	7 cut(s)	37, 155, 595, 745, 754, 784, 823
Hpy166II	GTNNAC	3 cut(s)	487, 509, 631
Hpy188I	TCNGA	2 cut(s)	191, 345
Hpy188III	TCNNGA	6 cut(s)	176, 229, 332, 334, 520, 894
Hpy8I	GTNNAC	3 cut(s)	487, 509, 631
HpyAV	CCTTC	6 cut(s)	58, 203, 304, 676, 733, 817
HpyCH4III	ACNGT	2 cut(s)	472, 589
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	5 cut(s)	202, 279, 493, 509, 835
HpyF10VI	GCNNNNNNNGC	5 cut(s)	276, 784, 824, 838, 841
HpyF3I	CTNAG	6 cut(s)	18, 54, 81, 188, 399, 459
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	2 cut(s)	493, 897
Kzo9I	GATC	3 cut(s)	316, 565, 604
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	2 cut(s)	154, 367
Lsp1109I	GCAGC	4 cut(s)	819, 825, 828, 847
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	219, 617
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	6 cut(s)	284, 353, 583, 742, 811, 864
MalI	GATC	3 cut(s)	318, 567, 606
MboI	GATC	3 cut(s)	316, 565, 604
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	6 cut(s)	189, 272, 480, 511, 578, 893
MluCI	AATT	1 cut(s)	180
MlyI	GAGTC	3 cut(s)	201, 292, 361
Mph1103I	ATGCAT	2 cut(s)	204, 495
MslI	CAYNNNNRTG	2 cut(s)	470, 473
MspA1I	CMGCKG	3 cut(s)	80, 398, 838
MspI	CCGG	4 cut(s)	608, 642, 674, 850
MwoI	GCNNNNNNNGC	5 cut(s)	276, 784, 824, 838, 841
NdeII	GATC	3 cut(s)	316, 565, 604
NlaIII	CATG	2 cut(s)	493, 897
NmuCI	GTSAC	5 cut(s)	284, 353, 583, 742, 811
NsiI	ATGCAT	2 cut(s)	204, 495
NspI	RCATGY	1 cut(s)	493
OliI	CACNNNNGTG	1 cut(s)	473
PaeR7I	CTCGAG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	893
PciSI	GCTCTTC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	6 cut(s)	168, 780, 834, 837, 840, 843
PleI	GAGTC	3 cut(s)	200, 291, 360
PpsI	GAGTC	3 cut(s)	200, 291, 360
Ppu21I	YACGTR	1 cut(s)	628
Psp124BI	GAGCTC	1 cut(s)	893
PspFI	CCCAGC	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	837
PstNI	CAGNNNCTG	1 cut(s)	841
PsuI	RGATCY	1 cut(s)	565
PvuII	CAGCTG	3 cut(s)	80, 398, 838
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	2 cut(s)	470, 473
SacI	GAGCTC	1 cut(s)	893
SapI	GCTCTTC	1 cut(s)	444
SatI	GCNGC	6 cut(s)	167, 779, 833, 836, 839, 842
Sau3AI	GATC	3 cut(s)	316, 565, 604
Sau96I	GGNCC	1 cut(s)	639
SchI	GAGTC	3 cut(s)	201, 292, 361
SduI	GDGCHC	6 cut(s)	189, 272, 480, 511, 578, 893
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	833
Sfr274I	CTCGAG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	639
SlaI	CTCGAG	1 cut(s)	332
SmiMI	CAYNNNNRTG	2 cut(s)	470, 473
SmlI	CTYRAG	3 cut(s)	174, 332, 479
SmoI	CTYRAG	3 cut(s)	174, 332, 479
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	6 cut(s)	164, 167, 779, 827, 857, 862
SspMI	CTAG	2 cut(s)	219, 617
SstI	GAGCTC	1 cut(s)	893
StyI	CCWWGG	1 cut(s)	878
TaaI	ACNGT	2 cut(s)	472, 589
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	1 cut(s)	333
TasI	AATT	1 cut(s)	180
TauI	GCSGC	2 cut(s)	169, 781
TfiI	GAWTC	1 cut(s)	551
TscAI	CASTG	2 cut(s)	277, 475
TseFI	GTSAC	5 cut(s)	284, 353, 583, 742, 811
TseI	GCWGC	4 cut(s)	832, 835, 838, 841
Tsp45I	GTSAC	5 cut(s)	284, 353, 583, 742, 811
TspDTI	ATGAA	2 cut(s)	554, 836
TspRI	CASTG	2 cut(s)	277, 475
VneI	GTGCAC	1 cut(s)	507
VpaK11BI	GGWCC	1 cut(s)	639
XceI	RCATGY	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	332
XspI	CTAG	2 cut(s)	219, 617
Zsp2I	ATGCAT	2 cut(s)	204, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.