Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Forward (+)

60575263 .. 60577105

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGGGAGGAGGGGAAAAAGCCTGAGGAGAAGAAAATGGAGGAGAAGAAGCCTGAGGAGGTGAAAAAGCCTGAACAGGAAAAGAAAGCTGAGGAGAAGAAGGAAGAGAAACCAGCTGAGGAGAAAAAGGAAGAGAAGAAAGCTGGGGAGGGTAAAGATGGCAAAGAGGCCAAAGAGGGTGATGCTCCACCACCACCACCTCAAGAAATTGTGCTCAGAGTCTATATGCATTGTGAAGGTTGTGCTAGAAAGGTCAAGAGGTGTCTCAAAGGCTTTCAAGGGGTGGAAGATGTGAGCACTGATTGCAAGAGTCACAAGGTGGTTGTCAAGGGCGACAAGGCTGATCCAAGCAAGGTTCTCGAGAGAGTTCAGAGGAAGAGTCACAGAAAAGTTGAGCTTCTCTCCCCAATCCCAAAACCAGCAGCTGAGGAGGAGAAGAAGCCTGAAGAGAAATCCAAGCCAGAGGAGAAGAAAGAAGAGCCTCCTCAGGTCATCACTGTGGTGCTCAAGGTTCACATGCATTGCGAGGCTTGTGCACAAGAAATCAAGAAACGCATACAGAGGATGAAAGGAGTGGAATCAGCAGAACCAGATCTAAAGGGCTCACAGGTGACAGTAAGGGGTGTGTTTGATCCGGCCAAGCTAGTTGAGTACGTGAACAAAAGGACCGGCAAGCACGCAGAGATAGTGAAGCAAGAACCGGAAAAGAAGGCTGACAAAGAAGAAGCCAAAGAGGGAAGTAAAGACGAGAAGAAAGGTGGTGAACAAGGTGACAAGGACAAGAAGAGTGGTGGTGGAGGTGAGGCCGCACCAGCAGAAGAGAACAAAGAAAAGAAAGGCGACGGCAATGAAGGCGGTGCTGCAGCTGCTGCTACACCGGATGGCGGGGCGGTTACAGAAGAGACCAAGGTTGTTGAGCTCATGAAGAACGAGTACAGTTACTATCCACCAAGGTTTCACATGGAGTACGCCTACGCTCCACAGCTCTTCAGTGATGAGAACCCCAATGCATGTTCTGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

342

Amino Acids

37.89

Weight (kDa)

6.48

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	72 - 125	5.8e-12	Heavy-metal-associated domain
HMA	PF00403	169 - 225	5.7e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	807, 855, 885, 890
AclWI	GGATC	2 cut(s)	338, 626
AcoI	YGGCCR	1 cut(s)	636
AcuI	CTGAAG	2 cut(s)	465, 973
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	3 cut(s)	653, 935, 968
AfiI	CCNNNNNNNGG	1 cut(s)	884
AgsI	TTSAA	1 cut(s)	278
AleI	CACNNNNGTG	1 cut(s)	500
AluBI	AGCT	9 cut(s)	89, 116, 143, 397, 425, 643, 866, 919, 985
AluI	AGCT	9 cut(s)	89, 116, 143, 397, 425, 643, 866, 919, 985
Alw21I	GWGCWC	5 cut(s)	216, 299, 507, 538, 921
Alw26I	GTCTC	2 cut(s)	269, 896
Alw44I	GTGCAC	1 cut(s)	534
AlwI	GGATC	2 cut(s)	338, 626
AlwNI	CAGNNNCTG	2 cut(s)	425, 869
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	168, 636, 804
ApaLI	GTGCAC	1 cut(s)	534
ApeKI	GCWGC	5 cut(s)	422, 860, 863, 866, 869
AspS9I	GGNCC	1 cut(s)	666
AsuHPI	GGTGA	6 cut(s)	73, 191, 622, 773, 782, 812
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	666
AxyI	CCTNAGG	3 cut(s)	24, 54, 486
BaeGI	GKGCMC	1 cut(s)	538
BanII	GRGCYC	2 cut(s)	605, 921
BarI	GAAGNNNNNNTAC	2 cut(s)	917, 949
Bbv12I	GWGCWC	5 cut(s)	216, 299, 507, 538, 921
BbvCI	CCTCAGC	3 cut(s)	90, 117, 426
BbvI	GCAGC	5 cut(s)	434, 847, 853, 856, 875
BccI	CCATC	2 cut(s)	152, 875
BceAI	ACGGC	1 cut(s)	859
BcgI	CGANNNNNNTGC	4 cut(s)	340, 374, 515, 549
BcoDI	GTCTC	2 cut(s)	269, 896
BfaI	CTAG	2 cut(s)	246, 644
BfmI	CTRYAG	1 cut(s)	861
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	6 cut(s)	423, 807, 861, 864, 867, 870
BlsI	GCNGC	6 cut(s)	424, 808, 862, 865, 868, 871
Bme18I	GGWCC	1 cut(s)	666
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	666
BmsI	GCATC	1 cut(s)	172
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
Bpu10I	CCTNAGC	3 cut(s)	90, 117, 426
BpuEI	CTTGAG	2 cut(s)	186, 491
BsaAI	YACGTR	1 cut(s)	655
BsaI	GGTCTC	1 cut(s)	896
BsaJI	CCNNGG	2 cut(s)	906, 950
BsaWI	WCCGGW	2 cut(s)	700, 877
Bsc4I	CCNNNNNNNGG	1 cut(s)	884
Bse118I	RCCGGY	1 cut(s)	668
Bse21I	CCTNAGG	3 cut(s)	24, 54, 486
Bse3DI	GCAATG	2 cut(s)	520, 853
BseDI	CCNNGG	2 cut(s)	906, 950
BseGI	GGATG	2 cut(s)	570, 886
BseLI	CCNNNNNNNGG	1 cut(s)	884
BseMI	GCAATG	2 cut(s)	520, 853
BseMII	CTCAG	7 cut(s)	15, 45, 81, 108, 229, 417, 500
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	5 cut(s)	434, 847, 853, 856, 875
BseYI	CCCAGC	1 cut(s)	143
BshFI	GGCC	3 cut(s)	170, 638, 806
BsiHKAI	GWGCWC	5 cut(s)	216, 299, 507, 538, 921
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	4 cut(s)	635, 669, 701, 878
BslI	CCNNNNNNNGG	1 cut(s)	884
BsmAI	GTCTC	2 cut(s)	269, 896
BsnI	GGCC	3 cut(s)	170, 638, 806
Bso31I	GGTCTC	1 cut(s)	896
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	6 cut(s)	216, 299, 507, 538, 605, 921
Bsp143I	GATC	3 cut(s)	343, 592, 631
BspACI	CCGC	4 cut(s)	807, 855, 885, 890
BspANI	GGCC	3 cut(s)	170, 638, 806
BspCNI	CTCAG	7 cut(s)	16, 46, 82, 109, 228, 418, 499
BspHI	TCATGA	1 cut(s)	921
BspMAI	CTGCAG	1 cut(s)	865
BspPI	GGATC	2 cut(s)	338, 626
BspQI	GCTCTTC	2 cut(s)	471, 992
BspTNI	GGTCTC	1 cut(s)	896
BsrDI	GCAATG	2 cut(s)	520, 853
BsrFI	RCCGGY	1 cut(s)	668
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	906, 950
BssMI	GATC	3 cut(s)	343, 592, 631
BssT1I	CCWWGG	2 cut(s)	906, 950
Bst4CI	ACNGT	3 cut(s)	499, 616, 938
Bst6I	CTCTTC	9 cut(s)	99, 126, 371, 441, 471, 779, 813, 894, 992
BstAPI	GCANNNNNTGC	2 cut(s)	303, 869
BstBAI	YACGTR	1 cut(s)	655
BstC8I	GCNNGC	2 cut(s)	674, 678
BstDEI	CTNAG	7 cut(s)	24, 54, 90, 117, 215, 426, 486
BstF5I	GGATG	2 cut(s)	570, 886
BstKTI	GATC	3 cut(s)	346, 595, 634
BstMAI	GTCTC	2 cut(s)	269, 896
BstMBI	GATC	3 cut(s)	343, 592, 631
BstMWI	GCNNNNNNNGC	5 cut(s)	303, 812, 852, 866, 869
BstNSI	RCATGY	2 cut(s)	520, 1014
BstSFI	CTRYAG	1 cut(s)	861
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	5 cut(s)	434, 847, 853, 856, 875
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
Bsu36I	CCTNAGG	3 cut(s)	24, 54, 486
BsuRI	GGCC	3 cut(s)	170, 638, 806
BtsCI	GGATG	2 cut(s)	570, 886
BtsIMutI	CAGTG	3 cut(s)	297, 495, 997
Cac8I	GCNNGC	2 cut(s)	674, 678
CaiI	CAGNNNCTG	2 cut(s)	425, 869
CciI	TCATGA	1 cut(s)	921
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	666
Csp6I	GTAC	3 cut(s)	652, 934, 967
CspCI	CAANNNNNGTGG	2 cut(s)	769, 804
CviAII	CATG	4 cut(s)	517, 922, 961, 1011
CviQI	GTAC	3 cut(s)	652, 934, 967
DdeI	CTNAG	7 cut(s)	24, 54, 90, 117, 215, 426, 486
DpnI	GATC	3 cut(s)	345, 594, 633
DpnII	GATC	3 cut(s)	343, 592, 631
DraIII	CACNNNGTG	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	9 cut(s)	99, 126, 371, 441, 471, 779, 813, 894, 992
EarI	CTCTTC	9 cut(s)	99, 126, 371, 441, 471, 779, 813, 894, 992
Ecl136II	GAGCTC	1 cut(s)	919
Eco130I	CCWWGG	2 cut(s)	906, 950
Eco24I	GRGCYC	2 cut(s)	605, 921
Eco31I	GGTCTC	1 cut(s)	896
Eco47I	GGWCC	1 cut(s)	666
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	2 cut(s)	465, 973
Eco81I	CCTNAGG	3 cut(s)	24, 54, 486
Eco88I	CYCGRG	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	919
EcoT14I	CCWWGG	2 cut(s)	906, 950
EcoT22I	ATGCAT	3 cut(s)	231, 522, 1012
EcoT38I	GRGCYC	2 cut(s)	605, 921
ErhI	CCWWGG	2 cut(s)	906, 950
FaeI	CATG	4 cut(s)	520, 925, 964, 1014
FaiI	YATR	8 cut(s)	225, 227, 518, 557, 923, 962, 1012, 1022
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	4 cut(s)	516, 921, 960, 1010
FauI	CCCGC	1 cut(s)	878
Fnu4HI	GCNGC	6 cut(s)	423, 807, 861, 864, 867, 870
FokI	GGATG	2 cut(s)	577, 893
FriOI	GRGCYC	2 cut(s)	605, 921
Fsp4HI	GCNGC	6 cut(s)	423, 807, 861, 864, 867, 870
FspBI	CTAG	2 cut(s)	246, 644
GluI	GCNGC	6 cut(s)	423, 807, 861, 864, 867, 870
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	170, 638, 806
HapII	CCGG	4 cut(s)	635, 669, 701, 878
Hin1II	CATG	4 cut(s)	520, 925, 964, 1014
HinfI	GANTC	4 cut(s)	219, 310, 379, 578
HpaII	CCGG	4 cut(s)	635, 669, 701, 878
HphI	GGTGA	6 cut(s)	73, 191, 622, 773, 782, 812
Hpy166II	GTNNAC	4 cut(s)	514, 536, 658, 764
Hpy188I	TCNGA	2 cut(s)	218, 372
Hpy188III	TCNNGA	6 cut(s)	203, 256, 359, 361, 547, 922
Hpy8I	GTNNAC	4 cut(s)	514, 536, 658, 764
Hpy99I	CGWCG	1 cut(s)	845
HpyAV	CCTTC	4 cut(s)	94, 230, 703, 845
HpyCH4III	ACNGT	3 cut(s)	499, 616, 938
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	6 cut(s)	229, 306, 520, 536, 863, 1010
HpyF10VI	GCNNNNNNNGC	5 cut(s)	303, 812, 852, 866, 869
HpyF3I	CTNAG	7 cut(s)	24, 54, 90, 117, 215, 426, 486
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	4 cut(s)	520, 925, 964, 1014
Kzo9I	GATC	3 cut(s)	343, 592, 631
LguI	GCTCTTC	2 cut(s)	471, 992
LmnI	GCTCC	2 cut(s)	190, 982
Lsp1109I	GCAGC	5 cut(s)	434, 847, 853, 856, 875
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	246, 644
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	6 cut(s)	311, 380, 610, 770, 892, 938
MalI	GATC	3 cut(s)	345, 594, 633
MboI	GATC	3 cut(s)	343, 592, 631
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	6 cut(s)	216, 299, 507, 538, 605, 921
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	3 cut(s)	228, 319, 388
Mph1103I	ATGCAT	3 cut(s)	231, 522, 1012
MslI	CAYNNNNRTG	2 cut(s)	497, 500
MspA1I	CMGCKG	3 cut(s)	116, 425, 866
MspI	CCGG	4 cut(s)	635, 669, 701, 878
MwoI	GCNNNNNNNGC	5 cut(s)	303, 812, 852, 866, 869
NdeII	GATC	3 cut(s)	343, 592, 631
NlaIII	CATG	4 cut(s)	520, 925, 964, 1014
NmuCI	GTSAC	4 cut(s)	311, 380, 610, 770
NsiI	ATGCAT	3 cut(s)	231, 522, 1012
NspI	RCATGY	2 cut(s)	520, 1014
OliI	CACNNNNGTG	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	359
PagI	TCATGA	1 cut(s)	921
PciSI	GCTCTTC	2 cut(s)	471, 992
PfeI	GAWTC	1 cut(s)	578
PkrI	GCNGC	6 cut(s)	424, 808, 862, 865, 868, 871
PleI	GAGTC	3 cut(s)	227, 318, 387
PpsI	GAGTC	3 cut(s)	227, 318, 387
Ppu21I	YACGTR	1 cut(s)	655
Psp124BI	GAGCTC	1 cut(s)	921
PspFI	CCCAGC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	666
PstI	CTGCAG	1 cut(s)	865
PstNI	CAGNNNCTG	2 cut(s)	425, 869
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	3 cut(s)	116, 425, 866
RsaI	GTAC	3 cut(s)	653, 935, 968
RsaNI	GTAC	3 cut(s)	652, 934, 967
RseI	CAYNNNNRTG	2 cut(s)	497, 500
SacI	GAGCTC	1 cut(s)	921
SapI	GCTCTTC	2 cut(s)	471, 992
SatI	GCNGC	6 cut(s)	423, 807, 861, 864, 867, 870
Sau3AI	GATC	3 cut(s)	343, 592, 631
Sau96I	GGNCC	1 cut(s)	666
SchI	GAGTC	3 cut(s)	228, 319, 388
SduI	GDGCHC	6 cut(s)	216, 299, 507, 538, 605, 921
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	861
Sfr274I	CTCGAG	1 cut(s)	359
SinI	GGWCC	1 cut(s)	666
SlaI	CTCGAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	2 cut(s)	497, 500
SmlI	CTYRAG	3 cut(s)	201, 359, 506
SmoI	CTYRAG	3 cut(s)	201, 359, 506
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	4 cut(s)	807, 855, 885, 890
SspMI	CTAG	2 cut(s)	246, 644
SstI	GAGCTC	1 cut(s)	921
StyI	CCWWGG	2 cut(s)	906, 950
TaaI	ACNGT	3 cut(s)	499, 616, 938
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	1 cut(s)	360
TasI	AATT	1 cut(s)	207
TatI	WGTACW	1 cut(s)	933
TauI	GCSGC	1 cut(s)	809
TfiI	GAWTC	1 cut(s)	578
TscAI	CASTG	3 cut(s)	304, 502, 997
TseFI	GTSAC	4 cut(s)	311, 380, 610, 770
TseI	GCWGC	5 cut(s)	422, 860, 863, 866, 869
Tsp45I	GTSAC	4 cut(s)	311, 380, 610, 770
TspDTI	ATGAA	3 cut(s)	581, 864, 938
TspRI	CASTG	3 cut(s)	304, 502, 997
VneI	GTGCAC	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	666
XceI	RCATGY	2 cut(s)	520, 1014
XhoI	CTCGAG	1 cut(s)	359
XspI	CTAG	2 cut(s)	246, 644
Zsp2I	ATGCAT	3 cut(s)	231, 522, 1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.