Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Reverse (-)

367524 .. 370917

Gene Structure 3394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCGCTTGGATCTGAACAGGAAAACAAACCAGAGGAGAAGAAGGAGGAAGAAAAGAAGGAGGAAGAGAAGAAGGTAGAAGAGCCACCGGAGATTGTGCTCAAGGTCGATATGCATTGTGAAGCTTGCGCCAGGAAAGTTGCTAGAGCCTTGAAGGGTTTTGAAGGAGTTGAGGATGTAACTACAGACAGCAAAGCGAGCAAGGTGGTGGTGAAAGGCAAAGCAGCAGACCCCATAAAGGTATGCGAGAGATTACAAAAGAAAAGTGGCAAAAAAGTGGAGCTGATTTCACCTTTGCCTAAACCAGTCGAGGAGGAGAAGAAAGAGGAGCCCAAAGAACCAGAGAAAAAGGAGGAGAAAAAAGAGGAGCCTCCCGCTGTTGTTACAGTGATTTTGAAAGTTCGAATGCACTGCGAAGCATGTGCTCAAGTTTTACAGAAGCGAATCCGAAAGATCCAAGGAGTGGAATCCGTAGTAACAGACGTTGGTAATGACCAGGTTGTAGTAACAGGTGTTGTGGATCCAGCCAAGCTTGCAGATGATGTCTACAAAAAAACCAGAAAGCACGTTTCCATTGTGCCCAAGGAGGAAGAGAAGAAGGAAGAAGAAAAGAAAGAAGAGGACAAGAAAGAAGAGACCAAAGATGGAGGAGGGGAGAAGAAAGAAGGGGAAACAGAAGAAGGCAAGGGATCCGATGATAACAAGAGTTTTGATATCAAGCGGAGTGAATATTGGCCATCAAAATACTACTCGGATTATGCATATACCCCTCAGATTTTCAGTGATGAGAACCCTAATGCCTGCTCTGTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

271

Amino Acids

30.66

Weight (kDa)

5.39

Isoelectric Point (pI)

59.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	34 - 88	3.3e-13	Heavy-metal-associated domain
HMA	PF00403	133 - 179	8.1e-11	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	546
AciI	CCGC	2 cut(s)	375, 721
AclWI	GGATC	6 cut(s)	19, 448, 515, 528, 684, 697
AcoI	YGGCCR	1 cut(s)	734
AfiI	CCNNNNNNNGG	2 cut(s)	238, 463
AgsI	TTSAA	3 cut(s)	154, 164, 397
AjnI	CCWGG	2 cut(s)	131, 495
AluBI	AGCT	3 cut(s)	125, 283, 532
AluI	AGCT	3 cut(s)	125, 283, 532
Alw21I	GWGCWC	2 cut(s)	102, 427
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	6 cut(s)	19, 448, 515, 528, 684, 697
AoxI	GGCC	1 cut(s)	734
ApeKI	GCWGC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	223, 282
AsuII	TTCGAA	1 cut(s)	403
BaeGI	GKGCMC	1 cut(s)	582
BalI	TGGCCA	1 cut(s)	736
BamHI	GGATCC	2 cut(s)	520, 689
BanII	GRGCYC	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	102, 427
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	2 cut(s)	638, 745
BcgI	CGANNNNNNTGC	4 cut(s)	393, 404, 427, 438
BciT130I	CCWGG	2 cut(s)	133, 497
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	133, 497
BmiI	GGNNCC	4 cut(s)	330, 369, 522, 691
BmrFI	CCNGG	2 cut(s)	133, 497
Bpu14I	TTCGAA	1 cut(s)	403
BpuEI	CTTGAG	2 cut(s)	86, 411
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	457, 582
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 463
Bse1I	ACTGG	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	133, 497
BseDI	CCNNGG	2 cut(s)	457, 582
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	238, 463
BseMII	CTCAG	1 cut(s)	785
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	7 cut(s)	50, 326, 329, 341, 368, 380, 663
BseSI	GKGCMC	1 cut(s)	582
BseXI	GCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	736
BsiHKAI	GWGCWC	2 cut(s)	102, 427
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	238, 463
BsmAI	GTCTC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	736
Bso31I	GGTCTC	1 cut(s)	629
Bsp119I	TTCGAA	1 cut(s)	403
Bsp1286I	GDGCHC	4 cut(s)	102, 333, 427, 582
Bsp143I	GATC	4 cut(s)	11, 453, 520, 689
BspACI	CCGC	2 cut(s)	375, 721
BspANI	GGCC	1 cut(s)	736
BspCNI	CTCAG	1 cut(s)	784
BspLI	GGNNCC	4 cut(s)	330, 369, 522, 691
BspPI	GGATC	6 cut(s)	19, 448, 515, 528, 684, 697
BspQI	GCTCTTC	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	403
BspTNI	GGTCTC	1 cut(s)	629
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	457, 582
BssMI	GATC	4 cut(s)	11, 453, 520, 689
BssT1I	CCWWGG	2 cut(s)	457, 582
Bst2UI	CCWGG	2 cut(s)	133, 497
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	5 cut(s)	60, 75, 585, 612, 627
BstBI	TTCGAA	1 cut(s)	403
BstC8I	GCNNGC	4 cut(s)	127, 199, 534, 802
BstDEI	CTNAG	1 cut(s)	771
BstF5I	GGATG	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	14, 456, 523, 692
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	4 cut(s)	11, 453, 520, 689
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 533
BstNI	CCWGG	2 cut(s)	133, 497
BstNSI	RCATGY	1 cut(s)	423
BstSCI	CCNGG	2 cut(s)	131, 495
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	236
BstX2I	RGATCY	4 cut(s)	11, 453, 520, 689
BstYI	RGATCY	4 cut(s)	11, 453, 520, 689
BsuRI	GGCC	1 cut(s)	736
BtsCI	GGATG	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	3 cut(s)	393, 409, 787
Cac8I	GCNNGC	4 cut(s)	127, 199, 534, 802
CfoI	GCGC	1 cut(s)	131
CsiI	ACCWGGT	1 cut(s)	495
CviAII	CATG	2 cut(s)	420, 811
CviJI	RGCY	9 cut(s)	85, 125, 149, 283, 331, 370, 527, 532, 736
CviKI_1	RGCY	9 cut(s)	85, 125, 149, 283, 331, 370, 527, 532, 736
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	4 cut(s)	13, 455, 522, 691
DpnII	GATC	4 cut(s)	11, 453, 520, 689
EaeI	YGGCCR	1 cut(s)	734
Eam1104I	CTCTTC	5 cut(s)	60, 75, 585, 612, 627
EarI	CTCTTC	5 cut(s)	60, 75, 585, 612, 627
Eco130I	CCWWGG	2 cut(s)	457, 582
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	629
Eco32I	GATATC	1 cut(s)	715
EcoRII	CCWGG	2 cut(s)	131, 495
EcoRV	GATATC	1 cut(s)	715
EcoT14I	CCWWGG	2 cut(s)	457, 582
EcoT22I	ATGCAT	2 cut(s)	117, 763
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	2 cut(s)	457, 582
FaeI	CATG	2 cut(s)	423, 814
FaiI	YATR	8 cut(s)	113, 236, 244, 421, 759, 763, 765, 812
FatI	CATG	2 cut(s)	419, 810
FauI	CCCGC	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	736
HapII	CCGG	1 cut(s)	89
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	423, 814
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	2 cut(s)	123, 530
HinfI	GANTC	2 cut(s)	444, 467
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	2 cut(s)	223, 282
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	5 cut(s)	16, 449, 694, 754, 774
Hpy8I	GTNNAC	1 cut(s)	547
HpyAV	CCTTC	8 cut(s)	37, 52, 67, 148, 158, 592, 659, 674
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	483, 567
HpyCH4V	TGCA	4 cut(s)	115, 409, 536, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 533
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	2 cut(s)	483, 567
Hsp92II	CATG	2 cut(s)	423, 814
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	11, 453, 520, 689
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	3 cut(s)	280, 328, 367
Lsp1109I	GCAGC	1 cut(s)	236
MabI	ACCWGGT	1 cut(s)	495
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	2 cut(s)	483, 567
MaeIII	GTNAC	4 cut(s)	178, 382, 475, 505
MalI	GATC	4 cut(s)	13, 455, 522, 691
MboI	GATC	4 cut(s)	11, 453, 520, 689
MflI	RGATCY	4 cut(s)	11, 453, 520, 689
MhlI	GDGCHC	4 cut(s)	102, 333, 427, 582
MlsI	TGGCCA	1 cut(s)	736
MluNI	TGGCCA	1 cut(s)	736
Mox20I	TGGCCA	1 cut(s)	736
Mph1103I	ATGCAT	2 cut(s)	117, 763
MscI	TGGCCA	1 cut(s)	736
Msp20I	TGGCCA	1 cut(s)	736
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	133, 497
Mva1269I	GAATGC	1 cut(s)	411
MvaI	CCWGG	2 cut(s)	133, 497
MwoI	GCNNNNNNNGC	2 cut(s)	198, 533
NdeII	GATC	4 cut(s)	11, 453, 520, 689
NlaIII	CATG	2 cut(s)	423, 814
NlaIV	GGNNCC	4 cut(s)	330, 369, 522, 691
NsiI	ATGCAT	2 cut(s)	117, 763
NspI	RCATGY	1 cut(s)	423
NspV	TTCGAA	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	75
PctI	GAATGC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	444, 467
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	131, 495
PspGI	CCWGG	2 cut(s)	131, 495
PspN4I	GGNNCC	4 cut(s)	330, 369, 522, 691
PsuI	RGATCY	4 cut(s)	11, 453, 520, 689
SapI	GCTCTTC	1 cut(s)	75
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	4 cut(s)	11, 453, 520, 689
ScrFI	CCNGG	2 cut(s)	133, 497
SduI	GDGCHC	4 cut(s)	102, 333, 427, 582
SexAI	ACCWGGT	1 cut(s)	495
SfcI	CTRYAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	403
SmlI	CTYRAG	2 cut(s)	101, 426
SmoI	CTYRAG	2 cut(s)	101, 426
SsiI	CCGC	2 cut(s)	375, 721
SspI	AATATT	1 cut(s)	731
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	131, 495
StyI	CCWWGG	2 cut(s)	457, 582
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	2 cut(s)	486, 570
TaqI	TCGA	3 cut(s)	108, 309, 403
TfiI	GAWTC	2 cut(s)	444, 467
TscAI	CASTG	3 cut(s)	393, 416, 787
TseI	GCWGC	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	3 cut(s)	393, 416, 787
Van91I	CCANNNNNTGG	1 cut(s)	463
XceI	RCATGY	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	1 cut(s)	144
Zsp2I	ATGCAT	2 cut(s)	117, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.