Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Forward (+)

58653707 .. 58656230

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCATGTAACCTCCGAGCACCATTCTTCCTCCGAAGCCGACCCGTCCTCCGCTGCACGTGGCCCCGTAGAAATGCCACGTCATGATGATGATGATATTGAAATACAAGGAACTAGTAGGTTCAAAGATCTGATGGTCCTGCTCAGATACAGAGAGCCCAAGTTTCGTATAGCGGTAGAGGAGGGGAAAAAGCCTGAGGAGAAGAAAATGGAGGAGAAGAAGCCTGAGGAGGTGAAAAAGCCTGAAGAGGAAAAGAAAGCTGAGGAGAAGAAGGAAGAGAAACCAGCTGAGGAGAAAAAGGAAGAGAAGAAAGCTGGGGAGGGTAAAGATGGCAAAGAGGCCAAAGAGGGTGATGCTCCTCCACCACCACCGCCACCACCTCAAGAAATTGTGCTCAGAGTCTATATGCATTGTGAAGGTTGTGCTAGAAAGGTCAAGAGGTGTCTCAAAGGCTTTCAAGGGGTGGAAGATGTGAGCACTGATTGCAAGAGTCAGAAGGTGGTGGTCAAGGGCGACAAGGCTGATCCAATCAAGGTTTTCGAGAGAGTTCAGAGGAAGAGTCACAGACAAGTTGAGCTTCTCTCCCCAATCCCAAAACCACCAGCTGAGGAGGAGAAGCCTGAAGAGAAACCCAAGCCAGAGGAGAAGAAAGAAGAGCCTCCTCAGATCATCACTGTGGTTCTCAAGGTTCACATGCATTGCGAGGCTTGTGCACAAGAAATCAAGAAACGCATACAGAGGATGAAAGGGGTGGAATCAGCAGAACCAGATCTAAAGGGCTCACAGGTGACAGTGAAGGGTGTGTTTGATCCGGCCAAGCTAGTTGAGTACGTGAACAAAAGGACCGGCAAGCACGCAGAGATAGTGAAGCAAGAACCGGAAAAGAAGGCTGACAAAGAAGAAGCCAAAGAGGGAAGTAAAGACGAGAAGAAAGGTGATGAAGAAGGTGACAAGGACAAGAAGAGTGGTGGTGGAGGTGAGGCCGCACCAGCAGAAGACAAAAAAGAAAAGAAAGGTGACGCCAATGAAGGCGGTGCTGCAGCTGCTGCTACACCGGATGGCGGGGCGGTTACAGAAGAGACCAAGGTTGTTGAGCTCATGAAGAACGAGTACAATCACTATCCACAAAGATTTCCCATGGAGTACGCCTACCCTCCACAGATCTTCAGTGATGAGAACCCCAATGCATGTTCTGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

400

Amino Acids

44.77

Weight (kDa)

5.81

Isoelectric Point (pI)

57.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	132 - 185	1.7e-11	Heavy-metal-associated domain
HMA	PF00403	228 - 284	5.9e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	51, 173, 371, 984, 1032, 1062, 1067
AclWI	GGATC	2 cut(s)	518, 803
AcoI	YGGCCR	1 cut(s)	813
AcuI	CTGAAG	3 cut(s)	264, 642, 1150
AcvI	CACGTG	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	1020
AfaI	GTAC	3 cut(s)	830, 1112, 1145
AfiI	CCNNNNNNNGG	1 cut(s)	1061
AgsI	TTSAA	3 cut(s)	101, 124, 458
AhlI	ACTAGT	1 cut(s)	113
AjiI	CACGTC	1 cut(s)	80
AluBI	AGCT	8 cut(s)	260, 287, 314, 577, 605, 820, 1043, 1096
AluI	AGCT	8 cut(s)	260, 287, 314, 577, 605, 820, 1043, 1096
Alw21I	GWGCWC	5 cut(s)	21, 396, 479, 715, 1098
Alw26I	GTCTC	2 cut(s)	449, 1073
Alw44I	GTGCAC	1 cut(s)	711
AlwI	GGATC	2 cut(s)	518, 803
AlwNI	CAGNNNCTG	1 cut(s)	1046
AoxI	GGCC	4 cut(s)	61, 339, 813, 981
ApaLI	GTGCAC	1 cut(s)	711
ApeKI	GCWGC	5 cut(s)	53, 1037, 1040, 1043, 1046
AspS9I	GGNCC	3 cut(s)	62, 136, 843
AsuHPI	GGTGA	7 cut(s)	244, 362, 799, 947, 959, 989, 1028
AvaII	GGWCC	2 cut(s)	136, 843
AxyI	CCTNAGG	2 cut(s)	195, 225
BaeGI	GKGCMC	1 cut(s)	715
BanII	GRGCYC	3 cut(s)	159, 782, 1098
BarI	GAAGNNNNNNTAC	2 cut(s)	1094, 1126
BbrPI	CACGTG	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	1002
Bbv12I	GWGCWC	5 cut(s)	21, 396, 479, 715, 1098
BbvCI	CCTCAGC	3 cut(s)	261, 288, 606
BbvI	GCAGC	5 cut(s)	40, 1024, 1030, 1033, 1052
BccI	CCATC	3 cut(s)	127, 323, 1052
BcgI	CGANNNNNNTGC	2 cut(s)	692, 726
BcoDI	GTCTC	2 cut(s)	449, 1073
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	3 cut(s)	114, 426, 821
BfmI	CTRYAG	1 cut(s)	1038
BglII	AGATCT	3 cut(s)	127, 769, 1161
BisI	GCNGC	6 cut(s)	54, 984, 1038, 1041, 1044, 1047
BlsI	GCNGC	6 cut(s)	55, 985, 1039, 1042, 1045, 1048
Bme18I	GGWCC	2 cut(s)	136, 843
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	3 cut(s)	62, 136, 843
BmiI	GGNNCC	1 cut(s)	64
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	1002
BplI	GAGNNNNNCTC	2 cut(s)	566, 598
Bpu10I	CCTNAGC	3 cut(s)	261, 288, 606
BpuEI	CTTGAG	2 cut(s)	366, 668
BsaAI	YACGTR	2 cut(s)	59, 832
BsaHI	GRCGYC	1 cut(s)	1020
BsaI	GGTCTC	1 cut(s)	1073
BsaJI	CCNNGG	2 cut(s)	1083, 1137
BsaWI	WCCGGW	2 cut(s)	877, 1054
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	1061
Bse118I	RCCGGY	1 cut(s)	845
Bse21I	CCTNAGG	2 cut(s)	195, 225
Bse3DI	GCAATG	1 cut(s)	697
BseDI	CCNNGG	2 cut(s)	1083, 1137
BseGI	GGATG	2 cut(s)	747, 1063
BseLI	CCNNNNNNNGG	1 cut(s)	1061
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	8 cut(s)	157, 186, 216, 252, 279, 409, 597, 677
BseSI	GKGCMC	1 cut(s)	715
BseXI	GCAGC	5 cut(s)	40, 1024, 1030, 1033, 1052
BseYI	CCCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	4 cut(s)	63, 341, 815, 983
BsiHKAI	GWGCWC	5 cut(s)	21, 396, 479, 715, 1098
BsiSI	CCGG	4 cut(s)	812, 846, 878, 1055
BslI	CCNNNNNNNGG	1 cut(s)	1061
BsmAI	GTCTC	2 cut(s)	449, 1073
BsnI	GGCC	4 cut(s)	63, 341, 815, 983
Bso31I	GGTCTC	1 cut(s)	1073
Bsp1286I	GDGCHC	7 cut(s)	21, 159, 396, 479, 715, 782, 1098
Bsp143I	GATC	6 cut(s)	127, 523, 666, 769, 808, 1161
Bsp19I	CCATGG	1 cut(s)	1137
BspACI	CCGC	7 cut(s)	51, 173, 371, 984, 1032, 1062, 1067
BspANI	GGCC	4 cut(s)	63, 341, 815, 983
BspCNI	CTCAG	8 cut(s)	156, 187, 217, 253, 280, 408, 598, 676
BspHI	TCATGA	2 cut(s)	82, 1098
BspLI	GGNNCC	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	1042
BspPI	GGATC	2 cut(s)	518, 803
BspQI	GCTCTTC	1 cut(s)	648
BspTNI	GGTCTC	1 cut(s)	1073
BsrDI	GCAATG	1 cut(s)	697
BsrFI	RCCGGY	1 cut(s)	845
BssAI	RCCGGY	1 cut(s)	845
BssECI	CCNNGG	2 cut(s)	1083, 1137
BssMI	GATC	6 cut(s)	127, 523, 666, 769, 808, 1161
BssNI	GRCGYC	1 cut(s)	1020
BssT1I	CCWWGG	2 cut(s)	1083, 1137
Bst4CI	ACNGT	2 cut(s)	676, 793
Bst6I	CTCTTC	8 cut(s)	240, 270, 297, 551, 618, 648, 956, 1071
BstACI	GRCGYC	1 cut(s)	1020
BstAPI	GCANNNNNTGC	2 cut(s)	483, 1046
BstBAI	YACGTR	2 cut(s)	59, 832
BstC8I	GCNNGC	2 cut(s)	851, 855
BstDEI	CTNAG	8 cut(s)	143, 195, 225, 261, 288, 395, 606, 663
BstDSI	CCRYGG	1 cut(s)	1137
BstF5I	GGATG	2 cut(s)	747, 1063
BstKTI	GATC	6 cut(s)	130, 526, 669, 772, 811, 1164
BstMAI	GTCTC	2 cut(s)	449, 1073
BstMBI	GATC	6 cut(s)	127, 523, 666, 769, 808, 1161
BstMWI	GCNNNNNNNGC	4 cut(s)	483, 989, 1043, 1046
BstNSI	RCATGY	3 cut(s)	8, 697, 1191
BstSFI	CTRYAG	1 cut(s)	1038
BstSLI	GKGCMC	1 cut(s)	715
BstV1I	GCAGC	5 cut(s)	40, 1024, 1030, 1033, 1052
BstV2I	GAAGAC	1 cut(s)	1002
BstX2I	RGATCY	3 cut(s)	127, 769, 1161
BstYI	RGATCY	3 cut(s)	127, 769, 1161
Bsu36I	CCTNAGG	2 cut(s)	195, 225
BsuRI	GGCC	4 cut(s)	63, 341, 815, 983
BtgI	CCRYGG	1 cut(s)	1137
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	747, 1063
BtsIMutI	CAGTG	4 cut(s)	477, 672, 798, 1174
Cac8I	GCNNGC	2 cut(s)	851, 855
CaiI	CAGNNNCTG	1 cut(s)	1046
CciI	TCATGA	2 cut(s)	82, 1098
Cfr10I	RCCGGY	1 cut(s)	845
Cfr13I	GGNCC	3 cut(s)	62, 136, 843
CseI	GACGC	1 cut(s)	1028
Csp6I	GTAC	3 cut(s)	829, 1111, 1144
CspCI	CAANNNNNGTGG	2 cut(s)	946, 981
CviAII	CATG	6 cut(s)	5, 83, 694, 1099, 1138, 1188
CviQI	GTAC	3 cut(s)	829, 1111, 1144
DdeI	CTNAG	8 cut(s)	143, 195, 225, 261, 288, 395, 606, 663
DpnI	GATC	6 cut(s)	129, 525, 668, 771, 810, 1163
DpnII	GATC	6 cut(s)	127, 523, 666, 769, 808, 1161
EaeI	YGGCCR	1 cut(s)	813
Eam1104I	CTCTTC	8 cut(s)	240, 270, 297, 551, 618, 648, 956, 1071
EarI	CTCTTC	8 cut(s)	240, 270, 297, 551, 618, 648, 956, 1071
Ecl136II	GAGCTC	1 cut(s)	1096
Eco130I	CCWWGG	2 cut(s)	1083, 1137
Eco24I	GRGCYC	3 cut(s)	159, 782, 1098
Eco31I	GGTCTC	1 cut(s)	1073
Eco47I	GGWCC	2 cut(s)	136, 843
Eco53kI	GAGCTC	1 cut(s)	1096
Eco57I	CTGAAG	3 cut(s)	264, 642, 1150
Eco72I	CACGTG	1 cut(s)	59
Eco81I	CCTNAGG	2 cut(s)	195, 225
EcoICRI	GAGCTC	1 cut(s)	1096
EcoT14I	CCWWGG	2 cut(s)	1083, 1137
EcoT22I	ATGCAT	4 cut(s)	6, 411, 699, 1189
EcoT38I	GRGCYC	3 cut(s)	159, 782, 1098
ErhI	CCWWGG	2 cut(s)	1083, 1137
FaeI	CATG	6 cut(s)	8, 86, 697, 1102, 1141, 1191
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FatI	CATG	6 cut(s)	4, 82, 693, 1098, 1137, 1187
FauI	CCCGC	1 cut(s)	1055
Fnu4HI	GCNGC	6 cut(s)	54, 984, 1038, 1041, 1044, 1047
FokI	GGATG	2 cut(s)	754, 1070
FriOI	GRGCYC	3 cut(s)	159, 782, 1098
Fsp4HI	GCNGC	6 cut(s)	54, 984, 1038, 1041, 1044, 1047
FspBI	CTAG	3 cut(s)	114, 426, 821
GluI	GCNGC	6 cut(s)	54, 984, 1038, 1041, 1044, 1047
GsaI	CCCAGC	1 cut(s)	318
HaeIII	GGCC	4 cut(s)	63, 341, 815, 983
HapII	CCGG	4 cut(s)	812, 846, 878, 1055
HgaI	GACGC	1 cut(s)	1028
Hin1I	GRCGYC	1 cut(s)	1020
Hin1II	CATG	6 cut(s)	8, 86, 697, 1102, 1141, 1191
HinfI	GANTC	4 cut(s)	399, 490, 559, 755
HpaII	CCGG	4 cut(s)	812, 846, 878, 1055
HphI	GGTGA	7 cut(s)	244, 362, 799, 947, 959, 989, 1028
Hpy166II	GTNNAC	3 cut(s)	691, 713, 835
Hpy188I	TCNGA	8 cut(s)	16, 34, 132, 146, 398, 495, 552, 666
Hpy188III	TCNNGA	6 cut(s)	83, 383, 436, 541, 724, 1099
Hpy8I	GTNNAC	3 cut(s)	691, 713, 835
HpyAV	CCTTC	7 cut(s)	265, 410, 490, 790, 880, 938, 1022
HpyCH4III	ACNGT	2 cut(s)	676, 793
HpyCH4IV	ACGT	3 cut(s)	58, 79, 831
HpyCH4V	TGCA	8 cut(s)	4, 56, 409, 486, 697, 713, 1040, 1187
HpyF10VI	GCNNNNNNNGC	4 cut(s)	483, 989, 1043, 1046
HpyF3I	CTNAG	8 cut(s)	143, 195, 225, 261, 288, 395, 606, 663
HpySE526I	ACGT	3 cut(s)	58, 79, 831
Hsp92I	GRCGYC	1 cut(s)	1020
Hsp92II	CATG	6 cut(s)	8, 86, 697, 1102, 1141, 1191
Kzo9I	GATC	6 cut(s)	127, 523, 666, 769, 808, 1161
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	5 cut(s)	40, 1024, 1030, 1033, 1052
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	3 cut(s)	114, 426, 821
MaeII	ACGT	3 cut(s)	58, 79, 831
MaeIII	GTNAC	6 cut(s)	7, 560, 787, 947, 1016, 1069
MalI	GATC	6 cut(s)	129, 525, 668, 771, 810, 1163
MboI	GATC	6 cut(s)	127, 523, 666, 769, 808, 1161
MflI	RGATCY	3 cut(s)	127, 769, 1161
MhlI	GDGCHC	7 cut(s)	21, 159, 396, 479, 715, 782, 1098
MluCI	AATT	1 cut(s)	387
MlyI	GAGTC	3 cut(s)	408, 499, 568
Mph1103I	ATGCAT	4 cut(s)	6, 411, 699, 1189
MslI	CAYNNNNRTG	2 cut(s)	87, 674
MspA1I	CMGCKG	4 cut(s)	53, 287, 605, 1043
MspI	CCGG	4 cut(s)	812, 846, 878, 1055
MwoI	GCNNNNNNNGC	4 cut(s)	483, 989, 1043, 1046
NcoI	CCATGG	1 cut(s)	1137
NdeII	GATC	6 cut(s)	127, 523, 666, 769, 808, 1161
NlaIII	CATG	6 cut(s)	8, 86, 697, 1102, 1141, 1191
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	4 cut(s)	560, 787, 947, 1016
NsiI	ATGCAT	4 cut(s)	6, 411, 699, 1189
NspI	RCATGY	3 cut(s)	8, 697, 1191
PagI	TCATGA	2 cut(s)	82, 1098
PciSI	GCTCTTC	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	755
PkrI	GCNGC	6 cut(s)	55, 985, 1039, 1042, 1045, 1048
PleI	GAGTC	3 cut(s)	407, 498, 567
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	3 cut(s)	407, 498, 567
Ppu21I	YACGTR	2 cut(s)	59, 832
Psp124BI	GAGCTC	1 cut(s)	1098
PspCI	CACGTG	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	3 cut(s)	62, 136, 843
PstI	CTGCAG	1 cut(s)	1042
PstNI	CAGNNNCTG	1 cut(s)	1046
PsuI	RGATCY	3 cut(s)	127, 769, 1161
PvuII	CAGCTG	3 cut(s)	287, 605, 1043
RsaI	GTAC	3 cut(s)	830, 1112, 1145
RsaNI	GTAC	3 cut(s)	829, 1111, 1144
RseI	CAYNNNNRTG	2 cut(s)	87, 674
SacI	GAGCTC	1 cut(s)	1098
SapI	GCTCTTC	1 cut(s)	648
SatI	GCNGC	6 cut(s)	54, 984, 1038, 1041, 1044, 1047
Sau3AI	GATC	6 cut(s)	127, 523, 666, 769, 808, 1161
Sau96I	GGNCC	3 cut(s)	62, 136, 843
SchI	GAGTC	3 cut(s)	408, 499, 568
SduI	GDGCHC	7 cut(s)	21, 159, 396, 479, 715, 782, 1098
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	1038
SinI	GGWCC	2 cut(s)	136, 843
SmiMI	CAYNNNNRTG	2 cut(s)	87, 674
SmlI	CTYRAG	2 cut(s)	381, 683
SmoI	CTYRAG	2 cut(s)	381, 683
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	7 cut(s)	51, 173, 371, 984, 1032, 1062, 1067
SspMI	CTAG	3 cut(s)	114, 426, 821
SstI	GAGCTC	1 cut(s)	1098
StyI	CCWWGG	2 cut(s)	1083, 1137
TaaI	ACNGT	2 cut(s)	676, 793
TaiI	ACGT	3 cut(s)	61, 82, 834
TaqI	TCGA	1 cut(s)	540
TasI	AATT	1 cut(s)	387
TatI	WGTACW	1 cut(s)	1110
TauI	GCSGC	1 cut(s)	986
TfiI	GAWTC	1 cut(s)	755
TscAI	CASTG	4 cut(s)	484, 679, 798, 1174
TseFI	GTSAC	4 cut(s)	560, 787, 947, 1016
TseI	GCWGC	5 cut(s)	53, 1037, 1040, 1043, 1046
Tsp45I	GTSAC	4 cut(s)	560, 787, 947, 1016
TspDTI	ATGAA	4 cut(s)	758, 954, 1041, 1115
TspRI	CASTG	4 cut(s)	484, 679, 798, 1174
VneI	GTGCAC	1 cut(s)	711
VpaK11BI	GGWCC	2 cut(s)	136, 843
XceI	RCATGY	3 cut(s)	8, 697, 1191
XspI	CTAG	3 cut(s)	114, 426, 821
Zsp2I	ATGCAT	4 cut(s)	6, 411, 699, 1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.