Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Reverse (-)

414336 .. 417177

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030881

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGTGAAGAAAACAAACCAGAGGAGAAGAAGGGGGAAGAGAAGAAGGTAGAAGAGCCACCGGAGATTGTGCTCAAGGTCGATATGCATTGTGAAGCTTGCGCCAGGAAAGTTGCTAGAGCCTTGAAGGGTTTTGAAGGAGTTGAGGATGTAACTACAGACAGCAAAGCGAGCAAGGTGGTGGTGAAAGGCAAAGCAGCAGACCCCATAAAGGTATGCGAGAGATTACAAAAGAAAAGTGGCAAAAAAGTGGAGCTGATTTCACCTTTGCCTAAACCAGTTGAGGAGGAGAAGAAAGAGGAGCCCAAAGAGCCAGAGAACAAGGAGGAGAAAAAAGAGGAGCCTCCCGCTGTTGTTACAGTGATTTTGAAAGTTCGAATGCACTGCGAAGCATGTGCTCAAGTTTTACAGAAGCGAATCCGAAAGATCCAAGGTGTGGAATCTGTAGTAACAGACGTTGGTAACGACCAGGTTGTAGTAACAGGTGTTGTGGATCCAGCCAAGCTTGCTGATGATGTCTACAAAAAAACCAGGAAGCACGTTTCCATTGTGCCCAAGGAGGAAGAGAAGAAGGAAGAAGAAAAGAAAGAAGAGGACAAGAAAGAAGAGACCAAAGATGGAGGAGGGGAGAAGAAAGAAGGGGAAACAGAAGAAGGCAAGGGATCCGATGATAACAAGAGTTTTGATATCAAGCGGAGTGAATATTGGCCATCAAAGTACTACTCGGATTATGCATATACCCCTCAGATTTTCAGTGATGAGAACCCTAATGCCTGCTCTGTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

263

Amino Acids

29.52

Weight (kDa)

5.44

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	25 - 79	3.1e-13	Heavy-metal-associated domain
HMA	PF00403	124 - 170	7.6e-11	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	2 cut(s)	348, 694
AclWI	GGATC	5 cut(s)	421, 488, 501, 657, 670
AcoI	YGGCCR	1 cut(s)	707
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	2 cut(s)	211, 436
AgsI	TTSAA	3 cut(s)	127, 137, 370
AjnI	CCWGG	3 cut(s)	104, 468, 530
AluBI	AGCT	3 cut(s)	98, 256, 505
AluI	AGCT	3 cut(s)	98, 256, 505
Alw21I	GWGCWC	2 cut(s)	75, 400
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	5 cut(s)	421, 488, 501, 657, 670
AoxI	GGCC	1 cut(s)	707
ApeKI	GCWGC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	104
AsuHPI	GGTGA	3 cut(s)	17, 196, 255
AsuII	TTCGAA	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	709
BamHI	GGATCC	2 cut(s)	493, 662
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	75, 400
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	2 cut(s)	611, 718
BcgI	CGANNNNNNTGC	4 cut(s)	366, 377, 400, 411
BciT130I	CCWGG	3 cut(s)	106, 470, 532
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	2 cut(s)	156, 444
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BmcAI	AGTACT	1 cut(s)	719
Bme1390I	CCNGG	3 cut(s)	106, 470, 532
BmiI	GGNNCC	4 cut(s)	303, 342, 495, 664
BmrFI	CCNGG	3 cut(s)	106, 470, 532
Bpu14I	TTCGAA	1 cut(s)	376
BpuEI	CTTGAG	2 cut(s)	59, 384
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	2 cut(s)	430, 555
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 436
Bse1I	ACTGG	1 cut(s)	278
BseBI	CCWGG	3 cut(s)	106, 470, 532
BseDI	CCNNGG	2 cut(s)	430, 555
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	211, 436
BseMII	CTCAG	1 cut(s)	758
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	7 cut(s)	38, 299, 302, 314, 341, 353, 636
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	709
BsiHKAI	GWGCWC	2 cut(s)	75, 400
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	211, 436
BsmAI	GTCTC	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	709
Bso31I	GGTCTC	1 cut(s)	602
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	4 cut(s)	75, 306, 400, 555
Bsp143I	GATC	3 cut(s)	426, 493, 662
BspACI	CCGC	2 cut(s)	348, 694
BspANI	GGCC	1 cut(s)	709
BspCNI	CTCAG	1 cut(s)	757
BspLI	GGNNCC	4 cut(s)	303, 342, 495, 664
BspPI	GGATC	5 cut(s)	421, 488, 501, 657, 670
BspQI	GCTCTTC	1 cut(s)	48
BspT104I	TTCGAA	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	430, 555
BssMI	GATC	3 cut(s)	426, 493, 662
BssT1I	CCWWGG	2 cut(s)	430, 555
Bst2UI	CCWGG	3 cut(s)	106, 470, 532
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	5 cut(s)	33, 48, 558, 585, 600
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	4 cut(s)	100, 172, 507, 775
BstDEI	CTNAG	1 cut(s)	744
BstF5I	GGATG	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	429, 496, 665
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	3 cut(s)	426, 493, 662
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 310, 506
BstNI	CCWGG	3 cut(s)	106, 470, 532
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	3 cut(s)	104, 468, 530
BstSFI	CTRYAG	2 cut(s)	156, 444
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	209
BstX2I	RGATCY	3 cut(s)	426, 493, 662
BstYI	RGATCY	3 cut(s)	426, 493, 662
BsuRI	GGCC	1 cut(s)	709
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	3 cut(s)	366, 382, 760
Cac8I	GCNNGC	4 cut(s)	100, 172, 507, 775
CfoI	GCGC	1 cut(s)	104
CsiI	ACCWGGT	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	718
CviAII	CATG	2 cut(s)	393, 784
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	1 cut(s)	744
DpnI	GATC	3 cut(s)	428, 495, 664
DpnII	GATC	3 cut(s)	426, 493, 662
EaeI	YGGCCR	1 cut(s)	707
Eam1104I	CTCTTC	5 cut(s)	33, 48, 558, 585, 600
EarI	CTCTTC	5 cut(s)	33, 48, 558, 585, 600
Eco130I	CCWWGG	2 cut(s)	430, 555
Eco24I	GRGCYC	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	602
Eco32I	GATATC	1 cut(s)	688
EcoRII	CCWGG	3 cut(s)	104, 468, 530
EcoRV	GATATC	1 cut(s)	688
EcoT14I	CCWWGG	2 cut(s)	430, 555
EcoT22I	ATGCAT	2 cut(s)	90, 736
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	2 cut(s)	430, 555
FaeI	CATG	2 cut(s)	396, 787
FaiI	YATR	8 cut(s)	86, 209, 217, 394, 732, 736, 738, 785
FatI	CATG	2 cut(s)	392, 783
FauI	CCCGC	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	709
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	396, 787
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HindIII	AAGCTT	2 cut(s)	96, 503
HinfI	GANTC	2 cut(s)	417, 440
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	3 cut(s)	17, 196, 255
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	4 cut(s)	422, 667, 727, 747
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	7 cut(s)	25, 40, 121, 131, 565, 632, 647
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	2 cut(s)	456, 540
HpyCH4V	TGCA	3 cut(s)	88, 382, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 310, 506
HpyF3I	CTNAG	1 cut(s)	744
HpySE526I	ACGT	2 cut(s)	456, 540
Hsp92II	CATG	2 cut(s)	396, 787
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	426, 493, 662
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	3 cut(s)	253, 301, 340
Lsp1109I	GCAGC	1 cut(s)	209
MabI	ACCWGGT	1 cut(s)	468
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	2 cut(s)	456, 540
MaeIII	GTNAC	5 cut(s)	151, 355, 448, 461, 478
MalI	GATC	3 cut(s)	428, 495, 664
MboI	GATC	3 cut(s)	426, 493, 662
MflI	RGATCY	3 cut(s)	426, 493, 662
MhlI	GDGCHC	4 cut(s)	75, 306, 400, 555
MlsI	TGGCCA	1 cut(s)	709
MluNI	TGGCCA	1 cut(s)	709
Mox20I	TGGCCA	1 cut(s)	709
Mph1103I	ATGCAT	2 cut(s)	90, 736
MscI	TGGCCA	1 cut(s)	709
Msp20I	TGGCCA	1 cut(s)	709
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	3 cut(s)	106, 470, 532
Mva1269I	GAATGC	1 cut(s)	384
MvaI	CCWGG	3 cut(s)	106, 470, 532
MwoI	GCNNNNNNNGC	3 cut(s)	171, 310, 506
NdeII	GATC	3 cut(s)	426, 493, 662
NlaIII	CATG	2 cut(s)	396, 787
NlaIV	GGNNCC	4 cut(s)	303, 342, 495, 664
NsiI	ATGCAT	2 cut(s)	90, 736
NspI	RCATGY	1 cut(s)	396
NspV	TTCGAA	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PctI	GAATGC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	417, 440
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	199
Psp6I	CCWGG	3 cut(s)	104, 468, 530
PspGI	CCWGG	3 cut(s)	104, 468, 530
PspN4I	GGNNCC	4 cut(s)	303, 342, 495, 664
PsuI	RGATCY	3 cut(s)	426, 493, 662
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
SapI	GCTCTTC	1 cut(s)	48
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	3 cut(s)	426, 493, 662
ScaI	AGTACT	1 cut(s)	719
ScrFI	CCNGG	3 cut(s)	106, 470, 532
SduI	GDGCHC	4 cut(s)	75, 306, 400, 555
SexAI	ACCWGGT	1 cut(s)	468
SfcI	CTRYAG	2 cut(s)	156, 444
SfuI	TTCGAA	1 cut(s)	376
SmlI	CTYRAG	2 cut(s)	74, 399
SmoI	CTYRAG	2 cut(s)	74, 399
SsiI	CCGC	2 cut(s)	348, 694
SspI	AATATT	1 cut(s)	704
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	104, 468, 530
StyI	CCWWGG	2 cut(s)	430, 555
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	2 cut(s)	459, 543
TaqI	TCGA	2 cut(s)	81, 376
TatI	WGTACW	1 cut(s)	717
TfiI	GAWTC	2 cut(s)	417, 440
TscAI	CASTG	3 cut(s)	366, 389, 760
TseI	GCWGC	1 cut(s)	197
TspRI	CASTG	3 cut(s)	366, 389, 760
Van91I	CCANNNNNTGG	1 cut(s)	436
XceI	RCATGY	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	1 cut(s)	117
ZrmI	AGTACT	1 cut(s)	719
Zsp2I	ATGCAT	2 cut(s)	90, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.