Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Reverse (-)

24868280 .. 24870616

Gene Structure 2337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1154200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGGGAGGAGGAGAAGAAACCAGAGGAGAAGAAAATGGAGGAGAAGAAGCCAGAGGCGGAGGAGAAGAAGCCTGAGGCTGCCGAGCAAAAGAAGGAGAAAGCCGAGGAGGGAAAAGATGGGAAAGCAGAGGCCAAGGAGGGTGATGCCGCCACCGCTCCTCCGCCTCCGCCGCCACCCCAAGAAATTGTGCTCAAAGTTTATATGCATTGTGAGGGATGTGCTCGCAAGGTCAAGCGGTGCCTCAAAGGATTTCAAGGGGTGGAAGATGTGAGCACAGATTGCAAGACTCACAAGGTGGTGGTGAAGGGAGAGAAGGCTGAACCAATTAAGGTTCTTGAAAGAGTTCAGAGGAAGAGCCACCGGCAGGTGGAGCTTCTCTTTCCAATCCCAAAACCGCCGGCGGAGGAGAAAGAGAAGCCCAAACCAGAGGAAAAGAAAGAAGAGCCCCAGGTAATCACAGTGGTGCTGAAAGTTCACATGCATTGCGACGCCTGTGCCCAAGAAATCAAGAAACGCATTCTCAGAATAAAAGGAGTGGAATCTGCTGAGGCAGATCTTAAGAGCTCAGAGGTGACAGTGAAGGGTGTGTTTGATCCGCCTAAGCTAGTTGATTATGTGCACAAAAGAACCGGGAAGCACGCGGCGATCGTGAAGCAAGAACCGGAGAAGAAAGAGAAAGAAAAAGCCAAAGATGAGAAGAAAGGTGGTGAAGTAGGTGACAAAGATAAGAAGGGCAAAGATGGTGGTGGCGATGAAGCGAAAGCAGAAGAGAACAAGGAAAATAAAGGTGACAACAATGAAGCTGCCGCCGCGGCCGCTGGTGGTGCACCGGAAGGAGCTGCCGCAGAAGAGACCAAGGTGGTGGAGCTGATGAAGAAGAATGAAAACTATTCTTACCCACCAAGGTATGCCATGGAACACTATGCCTACCCACCTCAGATCATGGAACAGTATGCAAACCCACCTCAGATCATGGAACAGTATGCCTACCCACCTCAGATCTTCAGTGATGAGAACCCTAATGCCTGCTCTATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

348

Amino Acids

38.67

Weight (kDa)

6.19

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	67 - 117	7.6e-12	Heavy-metal-associated domain
HMA	PF00403	157 - 214	2.8e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	240
AccBSI	CCGCTC	1 cut(s)	158
AccII	CGCG	2 cut(s)	644, 815
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	1 cut(s)	816
AcuI	CTGAAG	1 cut(s)	991
AcyI	GRCGYC	1 cut(s)	492
AdeI	CACNNNGTG	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	367, 370
AflII	CTTAAG	1 cut(s)	560
AgsI	TTSAA	2 cut(s)	257, 341
AjnI	CCWGG	1 cut(s)	450
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	6 cut(s)	376, 567, 607, 806, 842, 871
AluI	AGCT	6 cut(s)	376, 567, 607, 806, 842, 871
Alw21I	GWGCWC	6 cut(s)	195, 226, 278, 569, 624, 832
Alw26I	GTCTC	1 cut(s)	848
Alw44I	GTGCAC	2 cut(s)	620, 828
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	2 cut(s)	132, 816
ApaLI	GTGCAC	2 cut(s)	620, 828
ApeKI	GCWGC	3 cut(s)	80, 806, 842
Asp700I	GAANNNNTTC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	6 cut(s)	155, 316, 586, 722, 731, 803
AxyI	CCTNAGG	1 cut(s)	75
BaeGI	GKGCMC	3 cut(s)	502, 624, 832
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	2 cut(s)	450, 569
Bbv12I	GWGCWC	6 cut(s)	195, 226, 278, 569, 624, 832
BbvCI	CCTCAGC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	67, 793, 829
BccI	CCATC	2 cut(s)	113, 737
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	1 cut(s)	452
BcnI	CCSGG	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	1 cut(s)	608
BfrI	CTTAAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	358
BglI	GCCNNNNNGGC	1 cut(s)	815
BglII	AGATCT	2 cut(s)	556, 1002
Bme1390I	CCNGG	2 cut(s)	452, 634
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	452, 634
BmsI	GCATC	1 cut(s)	136
Bpu10I	CCTNAGC	2 cut(s)	549, 603
BpuMI	CCSGG	1 cut(s)	634
BsaHI	GRCGYC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	7 cut(s)	105, 135, 450, 813, 858, 905, 915
BsaWI	WCCGGW	2 cut(s)	664, 832
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 370
Bse118I	RCCGGY	2 cut(s)	363, 400
Bse21I	CCTNAGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	7 cut(s)	105, 135, 450, 813, 858, 905, 915
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	367, 370
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	7 cut(s)	66, 538, 540, 582, 953, 983, 1013
BseRI	GAGGAG	8 cut(s)	23, 26, 41, 56, 77, 122, 150, 422
BseSI	GKGCMC	3 cut(s)	502, 624, 832
BseX3I	CGGCCG	1 cut(s)	816
BseXI	GCAGC	3 cut(s)	67, 793, 829
Bsh1236I	CGCG	2 cut(s)	644, 815
Bsh1285I	CGRYCG	2 cut(s)	651, 819
BshFI	GGCC	2 cut(s)	134, 818
BshNI	GGYRCC	1 cut(s)	240
BsiEI	CGRYCG	2 cut(s)	651, 819
BsiHKAI	GWGCWC	6 cut(s)	195, 226, 278, 569, 624, 832
BsiSI	CCGG	5 cut(s)	364, 401, 633, 665, 833
BslI	CCNNNNNNNGG	2 cut(s)	367, 370
BsmAI	GTCTC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	2 cut(s)	134, 818
Bso31I	GGTCTC	1 cut(s)	848
Bsp1286I	GDGCHC	8 cut(s)	195, 226, 278, 450, 502, 569, 624, 832
Bsp143I	GATC	6 cut(s)	556, 595, 648, 942, 972, 1002
Bsp19I	CCATGG	1 cut(s)	915
BspANI	GGCC	2 cut(s)	134, 818
BspCNI	CTCAG	7 cut(s)	67, 537, 541, 581, 952, 982, 1012
BspFNI	CGCG	2 cut(s)	644, 815
BspLI	GGNNCC	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	590
BspQI	GCTCTTC	2 cut(s)	350, 438
BspT107I	GGYRCC	1 cut(s)	240
BspTI	CTTAAG	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	848
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	484
BsrFI	RCCGGY	2 cut(s)	363, 400
BssAI	RCCGGY	2 cut(s)	363, 400
BssECI	CCNNGG	7 cut(s)	105, 135, 450, 813, 858, 905, 915
BssMI	GATC	6 cut(s)	556, 595, 648, 942, 972, 1002
BssNI	GRCGYC	1 cut(s)	492
BssT1I	CCWWGG	4 cut(s)	135, 858, 905, 915
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	4 cut(s)	463, 580, 954, 984
Bst6I	CTCTTC	4 cut(s)	350, 438, 765, 846
BstACI	GRCGYC	1 cut(s)	492
BstAFI	CTTAAG	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	282
BstC8I	GCNNGC	4 cut(s)	226, 402, 642, 1030
BstDEI	CTNAG	8 cut(s)	75, 524, 549, 568, 603, 939, 969, 999
BstDSI	CCRYGG	2 cut(s)	813, 915
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	2 cut(s)	644, 815
BstKTI	GATC	6 cut(s)	559, 598, 651, 945, 975, 1005
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	6 cut(s)	556, 595, 648, 942, 972, 1002
BstMCI	CGRYCG	2 cut(s)	651, 819
BstMWI	GCNNNNNNNGC	8 cut(s)	155, 172, 282, 373, 812, 815, 818, 827
BstNI	CCWGG	1 cut(s)	452
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	2 cut(s)	450, 632
BstSLI	GKGCMC	3 cut(s)	502, 624, 832
BstUI	CGCG	2 cut(s)	644, 815
BstV1I	GCAGC	3 cut(s)	67, 793, 829
BstX2I	RGATCY	2 cut(s)	556, 1002
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstYI	RGATCY	2 cut(s)	556, 1002
BstZI	CGGCCG	1 cut(s)	816
Bsu36I	CCTNAGG	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	134, 818
BtgI	CCRYGG	2 cut(s)	813, 915
BtgZI	GCGATG	1 cut(s)	768
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	3 cut(s)	468, 585, 1015
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	4 cut(s)	226, 402, 642, 1030
CciNI	GCGGCCGC	1 cut(s)	816
Cfr10I	RCCGGY	2 cut(s)	363, 400
Cfr42I	CCGCGG	1 cut(s)	816
CseI	GACGC	1 cut(s)	500
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	5 cut(s)	481, 916, 946, 976, 1039
DdeI	CTNAG	8 cut(s)	75, 524, 549, 568, 603, 939, 969, 999
DpnI	GATC	6 cut(s)	558, 597, 650, 944, 974, 1004
DpnII	GATC	6 cut(s)	556, 595, 648, 942, 972, 1002
DraIII	CACNNNGTG	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	816
EagI	CGGCCG	1 cut(s)	816
Eam1104I	CTCTTC	4 cut(s)	350, 438, 765, 846
EarI	CTCTTC	4 cut(s)	350, 438, 765, 846
EciI	GGCGGA	5 cut(s)	74, 153, 159, 419, 588
Ecl136II	GAGCTC	1 cut(s)	567
EclXI	CGGCCG	1 cut(s)	816
Eco130I	CCWWGG	4 cut(s)	135, 858, 905, 915
Eco24I	GRGCYC	2 cut(s)	450, 569
Eco31I	GGTCTC	1 cut(s)	848
Eco52I	CGGCCG	1 cut(s)	816
Eco53kI	GAGCTC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	991
Eco81I	CCTNAGG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	567
EcoRII	CCWGG	1 cut(s)	450
EcoT14I	CCWWGG	4 cut(s)	135, 858, 905, 915
EcoT22I	ATGCAT	2 cut(s)	210, 486
EcoT38I	GRGCYC	2 cut(s)	450, 569
ErhI	CCWWGG	4 cut(s)	135, 858, 905, 915
FaeI	CATG	5 cut(s)	484, 919, 949, 979, 1042
FatI	CATG	5 cut(s)	480, 915, 945, 975, 1038
FokI	GGATG	1 cut(s)	231
FriOI	GRGCYC	2 cut(s)	450, 569
FspBI	CTAG	1 cut(s)	608
HaeIII	GGCC	2 cut(s)	134, 818
HapII	CCGG	5 cut(s)	364, 401, 633, 665, 833
HgaI	GACGC	1 cut(s)	500
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	5 cut(s)	484, 919, 949, 979, 1042
HinfI	GANTC	2 cut(s)	289, 542
HpaII	CCGG	5 cut(s)	364, 401, 633, 665, 833
HphI	GGTGA	6 cut(s)	155, 316, 586, 722, 731, 803
Hpy166II	GTNNAC	3 cut(s)	478, 622, 830
Hpy188I	TCNGA	6 cut(s)	351, 527, 571, 942, 972, 1002
Hpy188III	TCNNGA	3 cut(s)	338, 511, 652
Hpy8I	GTNNAC	3 cut(s)	478, 622, 830
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	6 cut(s)	88, 301, 310, 577, 727, 830
HpyCH4III	ACNGT	4 cut(s)	463, 580, 954, 984
HpyCH4V	TGCA	6 cut(s)	208, 285, 484, 622, 830, 959
HpyF10VI	GCNNNNNNNGC	8 cut(s)	155, 172, 282, 373, 812, 815, 818, 827
HpyF3I	CTNAG	8 cut(s)	75, 524, 549, 568, 603, 939, 969, 999
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	5 cut(s)	484, 919, 949, 979, 1042
KroI	GCCGGC	1 cut(s)	400
KroNI	GCCGGC	1 cut(s)	402
KspI	CCGCGG	1 cut(s)	816
Kzo9I	GATC	6 cut(s)	556, 595, 648, 942, 972, 1002
LguI	GCTCTTC	2 cut(s)	350, 438
LmnI	GCTCC	4 cut(s)	163, 373, 839, 868
Lsp1109I	GCAGC	3 cut(s)	67, 793, 829
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	608
MaeIII	GTNAC	3 cut(s)	574, 719, 791
MalI	GATC	6 cut(s)	558, 597, 650, 944, 974, 1004
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	6 cut(s)	556, 595, 648, 942, 972, 1002
MflI	RGATCY	2 cut(s)	556, 1002
MhlI	GDGCHC	8 cut(s)	195, 226, 278, 450, 502, 569, 624, 832
MluCI	AATT	2 cut(s)	186, 327
MlyI	GAGTC	1 cut(s)	283
Mph1103I	ATGCAT	2 cut(s)	210, 486
MreI	CGCCGGCG	1 cut(s)	400
MroNI	GCCGGC	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	2 cut(s)	330, 561
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	2 cut(s)	815, 821
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	5 cut(s)	364, 401, 633, 665, 833
MspR9I	CCNGG	2 cut(s)	452, 634
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	452
MvnI	CGCG	2 cut(s)	644, 815
MwoI	GCNNNNNNNGC	8 cut(s)	155, 172, 282, 373, 812, 815, 818, 827
NaeI	GCCGGC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	634
NcoI	CCATGG	1 cut(s)	915
NdeII	GATC	6 cut(s)	556, 595, 648, 942, 972, 1002
NgoMIV	GCCGGC	1 cut(s)	400
NlaIII	CATG	5 cut(s)	484, 919, 949, 979, 1042
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	2 cut(s)	109, 130
NmuCI	GTSAC	3 cut(s)	574, 719, 791
NotI	GCGGCCGC	1 cut(s)	816
NsiI	ATGCAT	2 cut(s)	210, 486
NspI	RCATGY	1 cut(s)	484
OliI	CACNNNNGTG	1 cut(s)	464
PaqCI	CACCTGC	1 cut(s)	358
PciSI	GCTCTTC	2 cut(s)	350, 438
PcsI	WCGNNNNNNNCGW	1 cut(s)	648
PctI	GAATGC	1 cut(s)	519
PdiI	GCCGGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	542
Ple19I	CGATCG	1 cut(s)	651
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	556, 1002
PvuI	CGATCG	1 cut(s)	651
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	569
SacII	CCGCGG	1 cut(s)	816
SapI	GCTCTTC	2 cut(s)	350, 438
SaqAI	TTAA	2 cut(s)	330, 561
Sau3AI	GATC	6 cut(s)	556, 595, 648, 942, 972, 1002
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	452, 634
SduI	GDGCHC	8 cut(s)	195, 226, 278, 450, 502, 569, 624, 832
SfaNI	GCATC	1 cut(s)	136
Sfr303I	CCGCGG	1 cut(s)	816
SgrAI	CRCCGGYG	1 cut(s)	400
SgrBI	CCGCGG	1 cut(s)	816
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	2 cut(s)	186, 327
SspMI	CTAG	1 cut(s)	608
SstI	GAGCTC	1 cut(s)	569
StyD4I	CCNGG	2 cut(s)	450, 632
StyI	CCWWGG	4 cut(s)	135, 858, 905, 915
TaaI	ACNGT	4 cut(s)	463, 580, 954, 984
TasI	AATT	2 cut(s)	186, 327
TauI	GCSGC	8 cut(s)	152, 175, 647, 812, 815, 818, 821, 848
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	2 cut(s)	330, 561
Tru9I	TTAA	2 cut(s)	330, 561
TscAI	CASTG	3 cut(s)	468, 585, 1015
TseFI	GTSAC	3 cut(s)	574, 719, 791
TseI	GCWGC	3 cut(s)	80, 806, 842
Tsp45I	GTSAC	3 cut(s)	574, 719, 791
TspDTI	ATGAA	4 cut(s)	771, 816, 890, 900
TspRI	CASTG	3 cut(s)	468, 585, 1015
Vha464I	CTTAAG	1 cut(s)	560
VneI	GTGCAC	2 cut(s)	620, 828
XceI	RCATGY	1 cut(s)	484
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	1 cut(s)	608
Zsp2I	ATGCAT	2 cut(s)	210, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.