Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Reverse (-)

293535 .. 297000

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G004800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGTGAAGAGAAGAAAGAGGAGAAGAAGGAGGAAGAAAAGAAGAAAGAAGGCAAAGACGAAAAGAAAGAAGAAAAGAAACCAGAAGAGCCTCCGGAGATTCTACTTAAGGTCGATATGCATTGTGAAGCTTGCGCAAGGAAAGTTGCTAGAGCCTTGAAGGGTTTTGAAGGAGTGGAGGATGTAACGACAGACAGTAAGGCAAGCAAAGTGGTGGTGAAAGGCAAAGCGGCGGACCCCATAAAGGTGTGCGAAAGATTACAAAAGAAAAGCGGCAAGAAAGTGGAGCTCATTTCACCTTTACCCAAACCTCCCGAGGAGAAGAAAGAAGAACCGGTTAAAGAAGCTGACAAGGAAGAGAAAAAAGAGGAGCCTCCGGCTGTTGTTACAGTGGTATTAACAGTTCGAATGCACTGCGAAGCATGCGCTCAACTTTTACAGAAGCGAATCCGAAAGATCAAAGGTGTCGAATCAGTGGAAACAGACGTCGCTAACGATCAGGTTGTAGTAAAAGGTGTGGTGGATCCTGCCAAGCTTGCTGAAGAAGTGTATAAAAAAACCAGAAAGCAGGTTTCCATTGTGAAGGAGGAAGAAAAGAAGGAAGAAGAAAAGAAGGAAGAAGAAAAGAAAGAAGAGGAGAAAAAAGAAGGAGAAAAGAAAGAAGGGGAGGAAGACAAAGGATCAGAGGATAACAAGGTTGATATCAAGCGGACCGAATATTGGCCAACAAAGTTCTACTCGGATTATTCTTACCCTTCCCCGCAGATTTTCAGTGATGAGAACCCTAATGCCTGCTCTGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

269

Amino Acids

30.64

Weight (kDa)

5.63

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	489
Acc16I	TGCGCA	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	559
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	5 cut(s)	230, 233, 273, 709, 761
AclWI	GGATC	3 cut(s)	518, 531, 688
AcoI	YGGCCR	1 cut(s)	722
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	486
AfiI	CCNNNNNNNGG	2 cut(s)	244, 720
AflII	CTTAAG	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	160, 170
AluBI	AGCT	4 cut(s)	131, 289, 347, 535
AluI	AGCT	4 cut(s)	131, 289, 347, 535
Alw21I	GWGCWC	1 cut(s)	291
AlwI	GGATC	3 cut(s)	518, 531, 688
Ama87I	CYCGRG	1 cut(s)	314
Aor13HI	TCCGGA	1 cut(s)	94
AoxI	GGCC	1 cut(s)	722
AsiGI	ACCGGT	1 cut(s)	334
AspLEI	GCGC	2 cut(s)	137, 428
AspS9I	GGNCC	2 cut(s)	235, 711
AsuHPI	GGTGA	3 cut(s)	17, 229, 288
AsuII	TTCGAA	1 cut(s)	406
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	235, 711
BalI	TGGCCA	1 cut(s)	724
BamHI	GGATCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BfaI	CTAG	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	559
BisI	GCNGC	2 cut(s)	231, 274
BlsI	GCNGC	2 cut(s)	232, 275
Bme18I	GGWCC	2 cut(s)	235, 711
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	235, 711
BmiI	GGNNCC	3 cut(s)	237, 372, 525
BpiI	GAAGAC	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	406
BsaHI	GRCGYC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	2 cut(s)	94, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 720
Bse118I	RCCGGY	1 cut(s)	334
BseAI	TCCGGA	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	244, 720
BseRI	GAGGAG	4 cut(s)	35, 332, 383, 650
BshFI	GGCC	1 cut(s)	724
BshTI	ACCGGT	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	3 cut(s)	95, 335, 377
BslI	CCNNNNNNNGG	2 cut(s)	244, 720
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	724
BsoBI	CYCGRG	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp13I	TCCGGA	1 cut(s)	94
Bsp143I	GATC	4 cut(s)	456, 496, 523, 680
BspACI	CCGC	5 cut(s)	230, 233, 273, 709, 761
BspANI	GGCC	1 cut(s)	724
BspEI	TCCGGA	1 cut(s)	94
BspLI	GGNNCC	3 cut(s)	237, 372, 525
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	3 cut(s)	518, 531, 688
BspQI	GCTCTTC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	406
BspTI	CTTAAG	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	4 cut(s)	456, 496, 523, 680
BssNI	GRCGYC	1 cut(s)	486
Bst4CI	ACNGT	3 cut(s)	197, 391, 403
Bst6I	CTCTTC	4 cut(s)	3, 81, 351, 627
BstACI	GRCGYC	1 cut(s)	486
BstAFI	CTTAAG	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	5 cut(s)	133, 205, 424, 537, 793
BstF5I	GGATG	1 cut(s)	187
BstHHI	GCGC	2 cut(s)	137, 428
BstKTI	GATC	4 cut(s)	459, 499, 526, 683
BstMBI	GATC	4 cut(s)	456, 496, 523, 680
BstMWI	GCNNNNNNNGC	2 cut(s)	423, 536
BstNSI	RCATGY	1 cut(s)	426
BstV2I	GAAGAC	1 cut(s)	678
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	724
BtsCI	GGATG	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	4 cut(s)	396, 412, 480, 778
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	5 cut(s)	133, 205, 424, 537, 793
CfoI	GCGC	2 cut(s)	137, 428
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	235, 711
CpoI	CGGWCCG	1 cut(s)	711
CspAI	ACCGGT	1 cut(s)	334
CspCI	CAANNNNNGTGG	2 cut(s)	192, 227
CspI	CGGWCCG	1 cut(s)	711
CviAII	CATG	1 cut(s)	423
CviJI	RGCY	9 cut(s)	91, 131, 155, 289, 347, 373, 380, 535, 724
CviKI_1	RGCY	9 cut(s)	91, 131, 155, 289, 347, 373, 380, 535, 724
DpnI	GATC	4 cut(s)	458, 498, 525, 682
DpnII	GATC	4 cut(s)	456, 496, 523, 680
EaeI	YGGCCR	1 cut(s)	722
Eam1104I	CTCTTC	4 cut(s)	3, 81, 351, 627
EarI	CTCTTC	4 cut(s)	3, 81, 351, 627
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	2 cut(s)	235, 711
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	703
EcoT22I	ATGCAT	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	1 cut(s)	426
FaiI	YATR	5 cut(s)	119, 242, 424, 552, 803
FatI	CATG	1 cut(s)	422
FauI	CCCGC	1 cut(s)	768
Fnu4HI	GCNGC	2 cut(s)	231, 274
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	2 cut(s)	231, 274
FspBI	CTAG	1 cut(s)	150
FspI	TGCGCA	1 cut(s)	136
GlaI	GCGC	2 cut(s)	136, 427
GluI	GCNGC	2 cut(s)	231, 274
HaeIII	GGCC	1 cut(s)	724
HapII	CCGG	3 cut(s)	95, 335, 377
HhaI	GCGC	2 cut(s)	137, 428
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	1 cut(s)	426
Hin6I	GCGC	2 cut(s)	135, 426
HinP1I	GCGC	2 cut(s)	135, 426
HindIII	AAGCTT	2 cut(s)	129, 533
HinfI	GANTC	3 cut(s)	100, 447, 470
HpaII	CCGG	3 cut(s)	95, 335, 377
HphI	GGTGA	3 cut(s)	17, 229, 288
Hpy188I	TCNGA	3 cut(s)	452, 685, 742
Hpy188III	TCNNGA	2 cut(s)	95, 314
Hpy99I	CGWCG	1 cut(s)	491
HpyCH4III	ACNGT	3 cut(s)	197, 391, 403
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	2 cut(s)	121, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	423, 536
HpySE526I	ACGT	1 cut(s)	486
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	1 cut(s)	426
HspAI	GCGC	2 cut(s)	135, 426
Kpn2I	TCCGGA	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	456, 496, 523, 680
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	2 cut(s)	286, 370
LpnPI	CCDG	8 cut(s)	96, 108, 348, 390, 485, 540, 554, 574
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	184, 385
MalI	GATC	4 cut(s)	458, 498, 525, 682
MboI	GATC	4 cut(s)	456, 496, 523, 680
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	291
MlsI	TGGCCA	1 cut(s)	724
MluNI	TGGCCA	1 cut(s)	724
Mox20I	TGGCCA	1 cut(s)	724
Mph1103I	ATGCAT	1 cut(s)	123
MroI	TCCGGA	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	724
MseI	TTAA	3 cut(s)	108, 339, 398
MslI	CAYNNNNRTG	1 cut(s)	245
Msp20I	TGGCCA	1 cut(s)	724
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	3 cut(s)	95, 335, 377
Mva1269I	GAATGC	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	423, 536
NdeII	GATC	4 cut(s)	456, 496, 523, 680
NlaIII	CATG	1 cut(s)	426
NlaIV	GGNNCC	3 cut(s)	237, 372, 525
NsbI	TGCGCA	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	123
NspI	RCATGY	1 cut(s)	426
NspV	TTCGAA	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	100, 447, 470
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	232, 275
Psp124BI	GAGCTC	1 cut(s)	291
PspN4I	GGNNCC	3 cut(s)	237, 372, 525
PspPI	GGNCC	2 cut(s)	235, 711
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PsuI	RGATCY	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	245
Rsr2I	CGGWCCG	1 cut(s)	711
RsrII	CGGWCCG	1 cut(s)	711
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	108, 339, 398
SatI	GCNGC	2 cut(s)	231, 274
Sau3AI	GATC	4 cut(s)	456, 496, 523, 680
Sau96I	GGNCC	2 cut(s)	235, 711
SduI	GDGCHC	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	406
SinI	GGWCC	2 cut(s)	235, 711
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SphI	GCATGC	1 cut(s)	426
SsiI	CCGC	5 cut(s)	230, 233, 273, 709, 761
SspI	AATATT	1 cut(s)	719
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	291
TaaI	ACNGT	3 cut(s)	197, 391, 403
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	3 cut(s)	114, 406, 468
TaqII	GACCGA	1 cut(s)	728
TauI	GCSGC	2 cut(s)	233, 276
TfiI	GAWTC	3 cut(s)	100, 447, 470
Tru1I	TTAA	3 cut(s)	108, 339, 398
Tru9I	TTAA	3 cut(s)	108, 339, 398
TscAI	CASTG	4 cut(s)	396, 419, 480, 778
TspRI	CASTG	4 cut(s)	396, 419, 480, 778
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	235, 711
XceI	RCATGY	1 cut(s)	426
XspI	CTAG	1 cut(s)	150
ZraI	GACGTC	1 cut(s)	487
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.