Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002139

Physical Location & Seq

Genomic Coordinates Reverse (-)

18025227 .. 18027106

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGGGAGGAGGAGAAGAACATGGAGGAGAAGAAGCCAGAGGAGGTGCAGAAAGAGGGAGAGAAAAAGCCTGAAGCTGCAGAGGAAAAGAAGGAGGAGAAGAAAGCCGAGGAGGGAAAAGATGGGAAAGTAGAGGCCAAGGAGGGTGACGACGCCGCCGCTGCTCCTCCGCCTCCGCCGCCACCTCAAGAAATTGTGCTCAAAGTTTATATGCATTGTGAAGGGTGTGCTCGCAAGGTGAAGCGGTGCCTCAAAGGATTTCAAGGGGTGGAAGATGTGAGCACAGATTGCAAAACTCACAAGGTGGTTGTGAAGGGAGAGAAGGCTGATCCAATTAAGGTTCTTGAAAGAGTTCAGAGGAAGAGCCACCGGCAGGTGGAGCTGCTGTCTCCAATCCCAAAACCGCCGACGGAGGAGGAGAAGAAGGCGGAGGAGAAAGAGAAGCCCAAGCCAGAAGAAAAGAAAGAGGAGCCTCAAGTCATCACGGTGGTGCTGAAAGTTCACATGCATTGCGACGCCTGTGCACAAGAAATCAAGAAACGCATTCTGAGAATGAAAGGAGTGGAATCTGCCGAAGCAGATCTTAAGAGCTCAGAGGTGACAGTGAAGGGTGTGTTTGATCCGGCTAAGCTAATTGATTATGTACGCAAAAGAACCGGGAAGCAAGCGGCGATCGTGAAGCAAGAACCGGAGAAGAAAGAGAAAGAAGAAGCCAAAGAAGCCAAAGATGAGAAGAAAGGTGGTGAGGAAGGTGATGACAAAGAGAAGAAAGGAAAAGATGGTGGTGGTGGTGATGAAGCAAAAGCAGAAGAGAAGAAGGAAAATAAAGCCGACAACAATGAAGCGGCAGCCGCCGCGGCCGCTGATGGTGCACCGGAAGGAGCTGCCACAGAAGAGACTAAGGTGGTGGAGCTGATGCAGAAGAATGAGTACTATTATCACCCATCAAGGTATGCCATGGAATTGTATGCCTACCCACCTCAGATCTTCAGTGATGAGAACCCTAATGCCTGCTCTATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

342

Amino Acids

37.97

Weight (kDa)

5.5

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	69 - 119	6.1e-12	Heavy-metal-associated domain
HMA	PF00403	165 - 221	1.6e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50740 AT5G50740 AT5G50740 AT5G50740 AT5G50740
fragaria_vesca	FvH4_3g00420 FvH4_5g08650 FvH4_5g08650 FvH4_5g08650 FvH4_6g37481
malus_domestica	MD00G1189000.v1.1 MD05G1360600.v1.1 MD06G1138200.v1.1 MD14G1154200.v1.1
prunus_persica	Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.4G004800_v2.0.a1 Prupe.5G148500_v2.0.a1 Prupe.5G148500_v2.0.a1
pyrus_communis	pycom05g32740 pycom06g12950 pycom10g28780 pycom14g12820
rosa_chinensis	RchiOBHm_Chr5g0000611 RchiOBHm_Chr7g0189731
rosa_laevigata	RLG00000004594 RLG00000030881
rosa_multiflora	Rmu_co8223778.1_g000001 Rmu_co8488275.1_g000001 Rmu_sc0001924.1_g000028 Rmu_sc0040344.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075600 Rroxscaffold_3G00265220
rosa_rugosa	Rorug04G0385400 Rorug06G0499400 Rorug06G0499400
rosa_samantha	Rh5AG005100 Rh5BG006700 Rh5CG005500 Rh5DG005400 Rh7AG104700 Rh7CG109200
rosa_wichuraiana	Rw5G000500 Rw7G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	364
Acc36I	ACCTGC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	1 cut(s)	857
AclWI	GGATC	2 cut(s)	323, 614
AcoI	YGGCCR	1 cut(s)	858
AcuI	CTGAAG	2 cut(s)	93, 973
AcyI	GRCGYC	2 cut(s)	153, 516
AdeI	CACNNNGTG	1 cut(s)	304
AfaI	GTAC	2 cut(s)	645, 932
AfiI	CCNNNNNNNGG	2 cut(s)	373, 376
AflII	CTTAAG	1 cut(s)	584
AgsI	TTSAA	2 cut(s)	263, 347
AleI	CACNNNNGTG	1 cut(s)	488
AluBI	AGCT	6 cut(s)	77, 382, 591, 631, 884, 913
AluI	AGCT	6 cut(s)	77, 382, 591, 631, 884, 913
Alw21I	GWGCWC	6 cut(s)	201, 232, 284, 526, 593, 874
Alw26I	GTCTC	2 cut(s)	393, 890
Alw44I	GTGCAC	2 cut(s)	522, 870
AlwI	GGATC	2 cut(s)	323, 614
AoxI	GGCC	2 cut(s)	135, 858
ApaLI	GTGCAC	2 cut(s)	522, 870
ApeKI	GCWGC	5 cut(s)	77, 161, 382, 848, 884
Asp700I	GAANNNNTTC	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	658
AsuHPI	GGTGA	7 cut(s)	158, 250, 610, 755, 764, 803, 932
BaeGI	GKGCMC	2 cut(s)	526, 874
BanI	GGYRCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	593
BarI	GAAGNNNNNNTAC	2 cut(s)	914, 946
Bbv12I	GWGCWC	6 cut(s)	201, 232, 284, 526, 593, 874
BbvI	GCAGC	5 cut(s)	64, 148, 369, 860, 871
BccI	CCATC	4 cut(s)	116, 773, 860, 952
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BcnI	CCSGG	1 cut(s)	658
BcoDI	GTCTC	2 cut(s)	393, 890
BfmI	CTRYAG	1 cut(s)	78
BfrI	CTTAAG	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	857
BglII	AGATCT	2 cut(s)	580, 984
BlpI	GCTNAGC	1 cut(s)	627
BmcAI	AGTACT	1 cut(s)	932
Bme1390I	CCNGG	1 cut(s)	658
BmiI	GGNNCC	2 cut(s)	248, 471
BmrFI	CCNGG	1 cut(s)	658
BmsI	GCATC	1 cut(s)	906
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	2 cut(s)	171, 459
BpuMI	CCSGG	1 cut(s)	658
BsaHI	GRCGYC	2 cut(s)	153, 516
BsaJI	CCNNGG	4 cut(s)	108, 138, 855, 957
BsaWI	WCCGGW	2 cut(s)	688, 874
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 376
Bse118I	RCCGGY	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	508
BseDI	CCNNGG	4 cut(s)	108, 138, 855, 957
BseLI	CCNNNNNNNGG	2 cut(s)	373, 376
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	3 cut(s)	539, 606, 995
BseSI	GKGCMC	2 cut(s)	526, 874
BseX3I	CGGCCG	1 cut(s)	858
BseXI	GCAGC	5 cut(s)	64, 148, 369, 860, 871
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	857
Bsh1285I	CGRYCG	2 cut(s)	675, 861
BshFI	GGCC	2 cut(s)	137, 860
BshNI	GGYRCC	1 cut(s)	246
BsiEI	CGRYCG	2 cut(s)	675, 861
BsiHKAI	GWGCWC	6 cut(s)	201, 232, 284, 526, 593, 874
BsiSI	CCGG	5 cut(s)	370, 623, 657, 689, 875
BslI	CCNNNNNNNGG	2 cut(s)	373, 376
BsmAI	GTCTC	2 cut(s)	393, 890
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	2 cut(s)	137, 860
Bsp1286I	GDGCHC	6 cut(s)	201, 232, 284, 526, 593, 874
Bsp143I	GATC	5 cut(s)	328, 580, 619, 672, 984
Bsp1720I	GCTNAGC	1 cut(s)	627
Bsp19I	CCATGG	1 cut(s)	957
BspANI	GGCC	2 cut(s)	137, 860
BspCNI	CTCAG	3 cut(s)	540, 605, 994
BspFNI	CGCG	1 cut(s)	857
BspLI	GGNNCC	2 cut(s)	248, 471
BspMAI	CTGCAG	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	2 cut(s)	323, 614
BspQI	GCTCTTC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	246
BspTI	CTTAAG	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	4 cut(s)	108, 138, 855, 957
BssMI	GATC	5 cut(s)	328, 580, 619, 672, 984
BssNI	GRCGYC	2 cut(s)	153, 516
BssT1I	CCWWGG	2 cut(s)	138, 957
Bst4CI	ACNGT	2 cut(s)	487, 604
Bst6I	CTCTTC	3 cut(s)	356, 804, 888
BstACI	GRCGYC	2 cut(s)	153, 516
BstAFI	CTTAAG	1 cut(s)	584
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	232, 666, 1012
BstDEI	CTNAG	5 cut(s)	548, 592, 627, 900, 981
BstDSI	CCRYGG	2 cut(s)	855, 957
BstFNI	CGCG	1 cut(s)	857
BstKTI	GATC	5 cut(s)	331, 583, 622, 675, 987
BstMAI	GTCTC	2 cut(s)	393, 890
BstMBI	GATC	5 cut(s)	328, 580, 619, 672, 984
BstMCI	CGRYCG	2 cut(s)	675, 861
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	656
BstSFI	CTRYAG	1 cut(s)	78
BstSLI	GKGCMC	2 cut(s)	526, 874
BstUI	CGCG	1 cut(s)	857
BstV1I	GCAGC	5 cut(s)	64, 148, 369, 860, 871
BstX2I	RGATCY	2 cut(s)	580, 984
BstYI	RGATCY	2 cut(s)	580, 984
BstZI	CGGCCG	1 cut(s)	858
BsuRI	GGCC	2 cut(s)	137, 860
BtgI	CCRYGG	2 cut(s)	855, 957
BtsIMutI	CAGTG	2 cut(s)	609, 997
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	3 cut(s)	232, 666, 1012
CciNI	GCGGCCGC	1 cut(s)	858
Cfr10I	RCCGGY	1 cut(s)	369
Cfr42I	CCGCGG	1 cut(s)	858
CseI	GACGC	2 cut(s)	161, 524
Csp6I	GTAC	2 cut(s)	644, 931
CviAII	CATG	4 cut(s)	22, 505, 958, 1021
CviQI	GTAC	2 cut(s)	644, 931
DdeI	CTNAG	5 cut(s)	548, 592, 627, 900, 981
DpnI	GATC	5 cut(s)	330, 582, 621, 674, 986
DpnII	GATC	5 cut(s)	328, 580, 619, 672, 984
DraIII	CACNNNGTG	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	858
EagI	CGGCCG	1 cut(s)	858
Eam1104I	CTCTTC	3 cut(s)	356, 804, 888
EarI	CTCTTC	3 cut(s)	356, 804, 888
EciI	GGCGGA	3 cut(s)	159, 165, 443
Ecl136II	GAGCTC	1 cut(s)	591
EclXI	CGGCCG	1 cut(s)	858
Eco130I	CCWWGG	2 cut(s)	138, 957
Eco24I	GRGCYC	1 cut(s)	593
Eco52I	CGGCCG	1 cut(s)	858
Eco53kI	GAGCTC	1 cut(s)	591
Eco57I	CTGAAG	2 cut(s)	93, 973
EcoICRI	GAGCTC	1 cut(s)	591
EcoT14I	CCWWGG	2 cut(s)	138, 957
EcoT22I	ATGCAT	2 cut(s)	216, 510
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	2 cut(s)	138, 957
FaeI	CATG	4 cut(s)	25, 508, 961, 1024
FaiI	YATR	9 cut(s)	23, 210, 212, 506, 642, 954, 959, 969, 1022
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	4 cut(s)	21, 504, 957, 1020
FriOI	GRGCYC	1 cut(s)	593
HaeIII	GGCC	2 cut(s)	137, 860
HapII	CCGG	5 cut(s)	370, 623, 657, 689, 875
HgaI	GACGC	2 cut(s)	161, 524
Hin1I	GRCGYC	2 cut(s)	153, 516
Hin1II	CATG	4 cut(s)	25, 508, 961, 1024
HinfI	GANTC	1 cut(s)	566
HpaII	CCGG	5 cut(s)	370, 623, 657, 689, 875
HphI	GGTGA	7 cut(s)	158, 250, 610, 755, 764, 803, 932
Hpy166II	GTNNAC	3 cut(s)	502, 524, 872
Hpy188I	TCNGA	4 cut(s)	357, 549, 595, 984
Hpy188III	TCNNGA	4 cut(s)	188, 344, 535, 676
Hpy8I	GTNNAC	3 cut(s)	502, 524, 872
Hpy99I	CGWCG	3 cut(s)	155, 412, 518
HpyAV	CCTTC	9 cut(s)	85, 215, 307, 316, 418, 601, 743, 811, 872
HpyCH4III	ACNGT	2 cut(s)	487, 604
HpyCH4V	TGCA	8 cut(s)	49, 80, 214, 291, 508, 524, 872, 919
HpyF3I	CTNAG	5 cut(s)	548, 592, 627, 900, 981
Hsp92I	GRCGYC	2 cut(s)	153, 516
Hsp92II	CATG	4 cut(s)	25, 508, 961, 1024
KspI	CCGCGG	1 cut(s)	858
Kzo9I	GATC	5 cut(s)	328, 580, 619, 672, 984
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	5 cut(s)	169, 379, 469, 881, 910
Lsp1109I	GCAGC	5 cut(s)	64, 148, 369, 860, 871
LweI	GCATC	1 cut(s)	906
MaeIII	GTNAC	2 cut(s)	146, 598
MalI	GATC	5 cut(s)	330, 582, 621, 674, 986
MboI	GATC	5 cut(s)	328, 580, 619, 672, 984
MflI	RGATCY	2 cut(s)	580, 984
MhlI	GDGCHC	6 cut(s)	201, 232, 284, 526, 593, 874
MluCI	AATT	4 cut(s)	192, 333, 633, 962
Mph1103I	ATGCAT	2 cut(s)	216, 510
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	2 cut(s)	336, 585
MslI	CAYNNNNRTG	2 cut(s)	485, 488
MspA1I	CMGCKG	3 cut(s)	161, 857, 863
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	5 cut(s)	370, 623, 657, 689, 875
MspR9I	CCNGG	1 cut(s)	658
Mva1269I	GAATGC	1 cut(s)	543
MvnI	CGCG	1 cut(s)	857
NciI	CCSGG	1 cut(s)	658
NcoI	CCATGG	1 cut(s)	957
NdeII	GATC	5 cut(s)	328, 580, 619, 672, 984
NlaIII	CATG	4 cut(s)	25, 508, 961, 1024
NlaIV	GGNNCC	2 cut(s)	248, 471
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	146, 598
NotI	GCGGCCGC	1 cut(s)	858
NsiI	ATGCAT	2 cut(s)	216, 510
NspI	RCATGY	1 cut(s)	508
OliI	CACNNNNGTG	1 cut(s)	488
PaqCI	CACCTGC	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	356
PctI	GAATGC	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	566
Ple19I	CGATCG	1 cut(s)	675
Psp124BI	GAGCTC	1 cut(s)	593
PspN4I	GGNNCC	2 cut(s)	248, 471
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	580, 984
PvuI	CGATCG	1 cut(s)	675
RsaI	GTAC	2 cut(s)	645, 932
RsaNI	GTAC	2 cut(s)	644, 931
RseI	CAYNNNNRTG	2 cut(s)	485, 488
SacI	GAGCTC	1 cut(s)	593
SacII	CCGCGG	1 cut(s)	858
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	336, 585
Sau3AI	GATC	5 cut(s)	328, 580, 619, 672, 984
ScaI	AGTACT	1 cut(s)	932
ScrFI	CCNGG	1 cut(s)	658
SduI	GDGCHC	6 cut(s)	201, 232, 284, 526, 593, 874
SfaNI	GCATC	1 cut(s)	906
SfcI	CTRYAG	1 cut(s)	78
Sfr303I	CCGCGG	1 cut(s)	858
SgrBI	CCGCGG	1 cut(s)	858
SmiMI	CAYNNNNRTG	2 cut(s)	485, 488
SmlI	CTYRAG	3 cut(s)	186, 474, 584
SmoI	CTYRAG	3 cut(s)	186, 474, 584
Sse9I	AATT	4 cut(s)	192, 333, 633, 962
SstI	GAGCTC	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	656
StyI	CCWWGG	2 cut(s)	138, 957
TaaI	ACNGT	2 cut(s)	487, 604
TasI	AATT	4 cut(s)	192, 333, 633, 962
TatI	WGTACW	1 cut(s)	930
TauI	GCSGC	9 cut(s)	158, 161, 181, 671, 848, 854, 857, 860, 863
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	336, 585
Tru9I	TTAA	2 cut(s)	336, 585
TscAI	CASTG	2 cut(s)	609, 997
TseFI	GTSAC	2 cut(s)	146, 598
TseI	GCWGC	5 cut(s)	77, 161, 382, 848, 884
Tsp45I	GTSAC	2 cut(s)	146, 598
TspDTI	ATGAA	3 cut(s)	569, 810, 855
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	2 cut(s)	609, 997
Vha464I	CTTAAG	1 cut(s)	584
VneI	GTGCAC	2 cut(s)	522, 870
XceI	RCATGY	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	351
ZrmI	AGTACT	1 cut(s)	932
Zsp2I	ATGCAT	2 cut(s)	216, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.