Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Reverse (-)

12909287 .. 12912297

Gene Structure 3011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAGCTCCAAATAATCTCCATGAAGATGTGTTGCAATGGGTGCAGAAAGATAATCGTCGTTTCCTGCGTGCCAATATCCGAGTTGGTGATCTTGATCGAACCATTAAGTTCTACACAGAATTTTTTGGGATGAAAGTGTTGAGCAGGCAAGATTTCCCAGACCAAAAGTACTCAACTGCAGTCGTCGCGTATGGACCTGAAGAGAGTCATTTTGTTCTAGGGCTCACACACCACCACGATGCAGCGGAGAAGTTAGACATCGGAACAGCCTTCGATCATTTTGGACTTGCAACCCAAGATGTTTATGGAACGGTTGAAAAAATCCGAGCAGCAGGAGGAGTGATCTCACGTGAACCAGGGCCGATTGCAGAGGGCGGGAGGACTATTTTTGCCTTCGTTAACGATCCCGACGGCTACAGTTTCGAGCTCATCCTCAGGCCACCAACTCCAGAACCACTGTGTCAAATATGCCTTAATGTGACTGATATTGATCGGTCAATTGAATTCTACCAAAAGGCATTGGGAATGAACCTACTATTGCAAAAGTACGACGCTCCCCAGTTCCAGTATACTATAGCTATGGTGGGTTACGGTGACGATTTTACTCAGACGACGATTATCGAGTTGAAATATAACTACAATGTGACAGAGTATACCAAAGGAAATGGATATGCAATGCTTGCTATCGGCACTGATGATGTCTACAAGAGCGGTGCAGCTGTTGAACTGGTTAACAAGGAACTTGGAGGGCAAACAATTCGACCCCCGGCTGTAAATCCTAAAACCAACACCAAAATCACTTGCTTCCTTGATTCTGATGGCTTTGAAACGGTATTGGTGGACAATCAAGACTATGCTGACTTCAACAGAAAATCGAAGGACAAGCATGGCCGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

301

Amino Acids

33.67

Weight (kDa)

5.21

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	23 - 144	2.4e-19	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	27 - 130	2e-06	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	156 - 277	1.4e-09	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	714
AccI	GTMKAC	3 cut(s)	572, 656, 705
AccII	CGCG	1 cut(s)	191
AciI	CCGC	3 cut(s)	248, 378, 714
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	892
AcsI	RAATTY	2 cut(s)	122, 506
AcuI	CTGAAG	1 cut(s)	222
AcvI	CACGTG	1 cut(s)	353
AfaI	GTAC	2 cut(s)	173, 551
AgsI	TTSAA	6 cut(s)	320, 506, 631, 728, 830, 868
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	4 cut(s)	8, 430, 581, 722
AluI	AGCT	4 cut(s)	8, 430, 581, 722
Alw21I	GWGCWC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	4 cut(s)	362, 440, 892, 896
ApeKI	GCWGC	4 cut(s)	5, 245, 332, 719
ApoI	RAATTY	2 cut(s)	122, 506
AspS9I	GGNCC	2 cut(s)	197, 362
AsuC2I	CCSGG	1 cut(s)	770
AsuHPI	GGTGA	2 cut(s)	101, 608
AvaII	GGWCC	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	437
BanII	GRGCYC	2 cut(s)	228, 432
BbrPI	CACGTG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	4 cut(s)	17, 257, 344, 731
BccI	CCATC	1 cut(s)	815
BceAI	ACGGC	1 cut(s)	430
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	770
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	3 cut(s)	180, 418, 576
BisI	GCNGC	4 cut(s)	6, 246, 333, 720
BlsI	GCNGC	4 cut(s)	7, 247, 334, 721
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	360, 770
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	197, 362
BmrFI	CCNGG	2 cut(s)	360, 770
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	556
BpmI	CTGGAG	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	770
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	2 cut(s)	96, 492
BsaJI	CCNNGG	2 cut(s)	359, 768
Bse118I	RCCGGY	1 cut(s)	894
Bse1I	ACTGG	3 cut(s)	562, 568, 735
Bse21I	CCTNAGG	1 cut(s)	437
Bse3DI	GCAATG	2 cut(s)	44, 684
Bse8I	GATNNNNATC	2 cut(s)	96, 492
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	359, 768
BseGI	GGATG	2 cut(s)	138, 432
BseJI	GATNNNNATC	2 cut(s)	96, 492
BseMI	GCAATG	2 cut(s)	44, 684
BseMII	CTCAG	2 cut(s)	451, 623
BseNI	ACTGG	3 cut(s)	562, 568, 735
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	4 cut(s)	17, 257, 344, 731
BsgI	GTGCAG	2 cut(s)	65, 738
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	4 cut(s)	364, 442, 894, 898
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	770, 895
BsnI	GGCC	4 cut(s)	364, 442, 894, 898
Bsp1286I	GDGCHC	2 cut(s)	228, 432
Bsp143I	GATC	6 cut(s)	91, 97, 277, 345, 406, 493
BspACI	CCGC	3 cut(s)	248, 378, 714
BspANI	GGCC	4 cut(s)	364, 442, 894, 898
BspCNI	CTCAG	2 cut(s)	450, 622
BspFNI	CGCG	1 cut(s)	191
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	714
BsrDI	GCAATG	2 cut(s)	44, 684
BsrFI	RCCGGY	1 cut(s)	894
BsrI	ACTGG	3 cut(s)	562, 568, 735
BssAI	RCCGGY	1 cut(s)	894
BssECI	CCNNGG	2 cut(s)	359, 768
BssMI	GATC	6 cut(s)	91, 97, 277, 345, 406, 493
BssNAI	GTATAC	2 cut(s)	573, 657
Bst1107I	GTATAC	2 cut(s)	573, 657
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	5 cut(s)	316, 422, 462, 596, 835
Bst6I	CTCTTC	1 cut(s)	198
BstAPI	GCANNNNNTGC	2 cut(s)	43, 683
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	4 cut(s)	72, 149, 684, 896
BstDEI	CTNAG	2 cut(s)	437, 609
BstF5I	GGATG	2 cut(s)	138, 432
BstFNI	CGCG	1 cut(s)	191
BstKTI	GATC	6 cut(s)	94, 100, 280, 348, 409, 496
BstMBI	GATC	6 cut(s)	91, 97, 277, 345, 406, 493
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 188, 683, 895
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	2 cut(s)	358, 768
BstSFI	CTRYAG	3 cut(s)	180, 418, 576
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	4 cut(s)	17, 257, 344, 731
BstZ17I	GTATAC	2 cut(s)	573, 657
Bsu36I	CCTNAGG	1 cut(s)	437
BsuRI	GGCC	4 cut(s)	364, 442, 894, 898
BtsCI	GGATG	2 cut(s)	138, 432
BtsIMutI	CAGTG	2 cut(s)	458, 693
Cac8I	GCNNGC	4 cut(s)	72, 149, 684, 896
Cfr10I	RCCGGY	1 cut(s)	894
Cfr13I	GGNCC	2 cut(s)	197, 362
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	172, 550
CviAII	CATG	2 cut(s)	23, 890
CviQI	GTAC	2 cut(s)	172, 550
DdeI	CTNAG	2 cut(s)	437, 609
DpnI	GATC	6 cut(s)	93, 99, 279, 347, 408, 495
DpnII	GATC	6 cut(s)	91, 97, 277, 345, 406, 493
EaeI	YGGCCR	1 cut(s)	892
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	430
Eco24I	GRGCYC	2 cut(s)	228, 432
Eco47I	GGWCC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	353
Eco81I	CCTNAGG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	358
EcoT38I	GRGCYC	2 cut(s)	228, 432
FaeI	CATG	2 cut(s)	26, 893
FatI	CATG	2 cut(s)	22, 889
FauI	CCCGC	1 cut(s)	371
FblI	GTMKAC	3 cut(s)	572, 656, 705
Fnu4HI	GCNGC	4 cut(s)	6, 246, 333, 720
FokI	GGATG	2 cut(s)	145, 419
FriOI	GRGCYC	2 cut(s)	228, 432
FseI	GGCCGGCC	1 cut(s)	898
Fsp4HI	GCNGC	4 cut(s)	6, 246, 333, 720
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	4 cut(s)	6, 246, 333, 720
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	4 cut(s)	364, 442, 894, 898
HapII	CCGG	2 cut(s)	770, 895
HgaI	GACGC	1 cut(s)	563
Hin1II	CATG	2 cut(s)	26, 893
HincII	GTYRAC	2 cut(s)	403, 736
HindII	GTYRAC	2 cut(s)	403, 736
HinfI	GANTC	2 cut(s)	208, 815
HpaI	GTTAAC	2 cut(s)	403, 736
HpaII	CCGG	2 cut(s)	770, 895
HphI	GGTGA	2 cut(s)	101, 608
Hpy166II	GTNNAC	7 cut(s)	356, 403, 573, 657, 706, 736, 844
Hpy188I	TCNGA	5 cut(s)	83, 266, 329, 612, 820
Hpy188III	TCNNGA	4 cut(s)	95, 410, 452, 851
Hpy8I	GTNNAC	7 cut(s)	356, 403, 573, 657, 706, 736, 844
Hpy99I	CGWCG	5 cut(s)	63, 191, 416, 557, 619
HpyAV	CCTTC	3 cut(s)	283, 406, 874
HpyCH4III	ACNGT	5 cut(s)	316, 422, 462, 596, 835
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	9 cut(s)	37, 46, 182, 245, 293, 371, 544, 677, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 188, 683, 895
HpyF3I	CTNAG	2 cut(s)	437, 609
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	2 cut(s)	26, 893
KroI	GCCGGC	1 cut(s)	894
KroNI	GCCGGC	1 cut(s)	896
KspAI	GTTAAC	2 cut(s)	403, 736
Kzo9I	GATC	6 cut(s)	91, 97, 277, 345, 406, 493
LmnI	GCTCC	2 cut(s)	13, 562
Lsp1109I	GCAGC	4 cut(s)	17, 257, 344, 731
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	4 cut(s)	481, 590, 596, 646
MalI	GATC	6 cut(s)	93, 99, 279, 347, 408, 495
MbiI	CCGCTC	1 cut(s)	714
MboI	GATC	6 cut(s)	91, 97, 277, 345, 406, 493
MboII	GAAGA	2 cut(s)	38, 215
MfeI	CAATTG	1 cut(s)	501
MhlI	GDGCHC	2 cut(s)	228, 432
MluCI	AATT	4 cut(s)	122, 501, 506, 759
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	332, 367, 375, 446, 743
MroNI	GCCGGC	1 cut(s)	894
MseI	TTAA	4 cut(s)	108, 402, 477, 735
MslI	CAYNNNNRTG	2 cut(s)	27, 240
MspA1I	CMGCKG	2 cut(s)	248, 722
MspI	CCGG	2 cut(s)	770, 895
MspR9I	CCNGG	2 cut(s)	360, 770
MunI	CAATTG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	4 cut(s)	43, 188, 683, 895
NaeI	GCCGGC	1 cut(s)	896
NciI	CCSGG	1 cut(s)	770
NdeII	GATC	6 cut(s)	91, 97, 277, 345, 406, 493
NgoMIV	GCCGGC	1 cut(s)	894
NlaIII	CATG	2 cut(s)	26, 893
NmuCI	GTSAC	3 cut(s)	481, 596, 646
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PdiI	GCCGGC	1 cut(s)	896
PfeI	GAWTC	1 cut(s)	815
PkrI	GCNGC	4 cut(s)	7, 247, 334, 721
PleI	GAGTC	1 cut(s)	216
PmaCI	CACGTG	1 cut(s)	353
PmlI	CACGTG	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	216
Ppu21I	YACGTR	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	358
PspCI	CACGTG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	197, 362
PstI	CTGCAG	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	722
RigI	GGCCGGCC	1 cut(s)	898
RsaI	GTAC	2 cut(s)	173, 551
RsaNI	GTAC	2 cut(s)	172, 550
RseI	CAYNNNNRTG	2 cut(s)	27, 240
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	108, 402, 477, 735
SatI	GCNGC	4 cut(s)	6, 246, 333, 720
Sau3AI	GATC	6 cut(s)	91, 97, 277, 345, 406, 493
Sau96I	GGNCC	2 cut(s)	197, 362
ScaI	AGTACT	1 cut(s)	173
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	360, 770
SduI	GDGCHC	2 cut(s)	228, 432
SetI	ASST	7 cut(s)	10, 202, 355, 432, 537, 583, 724
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	3 cut(s)	180, 418, 576
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	2 cut(s)	27, 240
Sse9I	AATT	4 cut(s)	122, 501, 506, 759
SsiI	CCGC	3 cut(s)	248, 378, 714
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	358, 768
TaaI	ACNGT	5 cut(s)	316, 422, 462, 596, 835
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	6 cut(s)	100, 276, 426, 624, 763, 878
TaqII	GACCGA	1 cut(s)	486
TasI	AATT	4 cut(s)	122, 501, 506, 759
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	815
Tru1I	TTAA	4 cut(s)	108, 402, 477, 735
Tru9I	TTAA	4 cut(s)	108, 402, 477, 735
TscAI	CASTG	2 cut(s)	465, 700
TseFI	GTSAC	3 cut(s)	481, 596, 646
TseI	GCWGC	4 cut(s)	5, 245, 332, 719
Tsp45I	GTSAC	3 cut(s)	481, 596, 646
TspDTI	ATGAA	3 cut(s)	39, 149, 545
TspRI	CASTG	2 cut(s)	465, 700
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	122, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmiI	GTMKAC	3 cut(s)	572, 656, 705
XspI	CTAG	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.