Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004516.1

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Forward (+)

58577 .. 61202

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004516.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atggtgaagtaccagcacttggtctactgtgttctgttgttcatctctttgattgatttaagcacggcagctcgcagtaatccccctgacgatgtattggaatgggttcaaaaagatgatcgccgtttcctgcgtgccaatatcagagtgggtgatattaatcgaaccattaagttttacaccgagttttttgggatgaaagtgttgagaagaaaagatttcccagaagtaaatatctcaaatgcagtcattgggtttggatctgaagagactcaatttgttctgggcctcagccaacaccacagtgcagttgacaaattggagctcggaacagccttcagtcattttggaattacaacccaagatatttatacaatggttgaaaaaattcgagctgctggtggggtgatcactcgtgaaccggggccagtcgcacctggtgggactaccatctacgcctttgtgaatgatcccgatggctacagtttcgagctcatcctcaggccgccatcaccagaaccacttaaccatatgtgtcttaatgtggttgatattgatcgttctattgacttctacgaaaaggctttgggaatgaacttactagtgccaaagtacgacaatactcaagagcagtatactgtagctatggtgggctatggatccaactatactcagacgaccgtcatcgagctgaaatataactataatgtgacagagtataccaaaggaaatggatatgcacaggttgctattggcactgatgatgtatacaagagcgcagcagctgttgaacaagctatccaggaacttggtgggaaaataattcgaccaccaggtccacttccaattatcgggaccaaaatcactgcattccttgattcagatggctttgaaacggtgttggtggacaatgaagactatcttaattatcttaaacaattcaagaaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

317

Amino Acids

35.56

Weight (kDa)

5.09

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	834
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccI	GTMKAC	4 cut(s)	24, 635, 719, 768
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	4 cut(s)	268, 464, 654, 667
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	2 cut(s)	285, 322
AdeI	CACNNNGTG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	11, 614
AfiI	CCNNNNNNNGG	2 cut(s)	19, 851
AgsI	TTSAA	5 cut(s)	110, 383, 791, 893, 943
AhlI	ACTAGT	1 cut(s)	601
AjnI	CCWGG	3 cut(s)	436, 801, 832
AleI	CACNNNNGTG	1 cut(s)	303
AloI	GAACNNNNNNTCC	2 cut(s)	783, 815
AluBI	AGCT	8 cut(s)	71, 325, 395, 493, 644, 691, 785, 797
AluI	AGCT	8 cut(s)	71, 325, 395, 493, 644, 691, 785, 797
Alw21I	GWGCWC	2 cut(s)	327, 495
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	4 cut(s)	268, 464, 654, 667
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	3 cut(s)	286, 425, 503
ApeKI	GCWGC	4 cut(s)	68, 395, 779, 782
ApoI	RAATTY	1 cut(s)	387
AseI	ATTAAT	1 cut(s)	159
Asp700I	GAANNNNTTC	2 cut(s)	105, 387
AspLEI	GCGC	1 cut(s)	779
AspS9I	GGNCC	4 cut(s)	286, 425, 836, 855
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	4 cut(s)	16, 164, 418, 504
AvaII	GGWCC	2 cut(s)	836, 855
AxyI	CCTNAGG	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	659
BanII	GRGCYC	2 cut(s)	327, 495
BauI	CACGAG	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	921
Bbv12I	GWGCWC	2 cut(s)	327, 495
BbvCI	CCTCAGC	1 cut(s)	290
BbvI	GCAGC	4 cut(s)	80, 382, 791, 794
BccI	CCATC	4 cut(s)	458, 470, 517, 878
BceAI	ACGGC	2 cut(s)	81, 108
BciT130I	CCWGG	3 cut(s)	438, 803, 834
BclI	TGATCA	1 cut(s)	408
BcnI	CCSGG	1 cut(s)	423
BcoDI	GTCTC	1 cut(s)	263
BcuI	ACTAGT	1 cut(s)	601
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	2 cut(s)	481, 639
BisI	GCNGC	5 cut(s)	69, 396, 506, 780, 783
BlsI	GCNGC	5 cut(s)	70, 397, 507, 781, 784
Bme1390I	CCNGG	4 cut(s)	423, 438, 803, 834
Bme18I	GGWCC	2 cut(s)	836, 855
BmgT120I	GGNCC	4 cut(s)	286, 425, 836, 855
BmiI	GGNNCC	3 cut(s)	426, 661, 856
BmrFI	CCNGG	4 cut(s)	423, 438, 803, 834
BoxI	GACNNNNGTC	1 cut(s)	680
BpiI	GAAGAC	1 cut(s)	921
Bpu10I	CCTNAGC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	609
BpuMI	CCSGG	1 cut(s)	423
BsaBI	GATNNNNATC	2 cut(s)	159, 555
BsaJI	CCNNGG	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 851
Bse1I	ACTGG	1 cut(s)	428
Bse21I	CCTNAGG	1 cut(s)	500
Bse8I	GATNNNNATC	2 cut(s)	159, 555
BseBI	CCWGG	3 cut(s)	438, 803, 834
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	2 cut(s)	201, 495
BseJI	GATNNNNATC	2 cut(s)	159, 555
BseLI	CCNNNNNNNGG	2 cut(s)	19, 851
BseMII	CTCAG	3 cut(s)	304, 514, 686
BseNI	ACTGG	1 cut(s)	428
BseXI	GCAGC	4 cut(s)	80, 382, 791, 794
BsgI	GTGCAG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	681
BshFI	GGCC	3 cut(s)	288, 427, 505
BsiEI	CGRYCG	1 cut(s)	681
BsiHKAI	GWGCWC	2 cut(s)	327, 495
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	2 cut(s)	457, 868
BslI	CCNNNNNNNGG	2 cut(s)	19, 851
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	2 cut(s)	457, 868
BsmI	GAATGC	1 cut(s)	869
BsnI	GGCC	3 cut(s)	288, 427, 505
Bsp1286I	GDGCHC	2 cut(s)	327, 495
Bsp143I	GATC	6 cut(s)	118, 260, 408, 469, 556, 659
BspACI	CCGC	1 cut(s)	506
BspANI	GGCC	3 cut(s)	288, 427, 505
BspCNI	CTCAG	3 cut(s)	303, 513, 685
BspLI	GGNNCC	3 cut(s)	426, 661, 856
BspPI	GGATC	4 cut(s)	268, 464, 654, 667
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	6 cut(s)	118, 260, 408, 469, 556, 659
BssNAI	GTATAC	3 cut(s)	636, 720, 769
BssSI	CACGAG	1 cut(s)	414
Bst1107I	GTATAC	3 cut(s)	636, 720, 769
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	3 cut(s)	438, 803, 834
Bst4CI	ACNGT	6 cut(s)	29, 305, 485, 640, 682, 898
Bst6I	CTCTTC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstC8I	GCNNGC	2 cut(s)	73, 135
BstDEI	CTNAG	3 cut(s)	290, 500, 672
BstF5I	GGATG	2 cut(s)	201, 495
BstHHI	GCGC	1 cut(s)	779
BstKTI	GATC	6 cut(s)	121, 263, 411, 472, 559, 662
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	6 cut(s)	118, 260, 408, 469, 556, 659
BstMCI	CGRYCG	1 cut(s)	681
BstMWI	GCNNNNNNNGC	1 cut(s)	746
BstNI	CCWGG	3 cut(s)	438, 803, 834
BstPAI	GACNNNNGTC	1 cut(s)	680
BstSCI	CCNGG	4 cut(s)	421, 436, 801, 832
BstSFI	CTRYAG	2 cut(s)	481, 639
BstV1I	GCAGC	4 cut(s)	80, 382, 791, 794
BstV2I	GAAGAC	1 cut(s)	921
BstX2I	RGATCY	2 cut(s)	260, 659
BstXI	CCANNNNNNTGG	1 cut(s)	809
BstYI	RGATCY	2 cut(s)	260, 659
BstZ17I	GTATAC	3 cut(s)	636, 720, 769
Bsu36I	CCTNAGG	1 cut(s)	500
BsuRI	GGCC	3 cut(s)	288, 427, 505
BtsCI	GGATG	2 cut(s)	201, 495
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	3 cut(s)	310, 756, 864
Cac8I	GCNNGC	2 cut(s)	73, 135
CaiI	CAGNNNCTG	1 cut(s)	785
CfoI	GCGC	1 cut(s)	779
Cfr13I	GGNCC	4 cut(s)	286, 425, 836, 855
CsiI	ACCWGGT	2 cut(s)	436, 832
Csp6I	GTAC	2 cut(s)	10, 613
CviQI	GTAC	2 cut(s)	10, 613
DdeI	CTNAG	3 cut(s)	290, 500, 672
DpnI	GATC	6 cut(s)	120, 262, 410, 471, 558, 661
DpnII	GATC	6 cut(s)	118, 260, 408, 469, 556, 659
DraIII	CACNNNGTG	1 cut(s)	440
DrdI	GACNNNNNNGTC	1 cut(s)	834
DseDI	GACNNNNNNGTC	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Ecl136II	GAGCTC	2 cut(s)	325, 493
Eco24I	GRGCYC	2 cut(s)	327, 495
Eco47I	GGWCC	2 cut(s)	836, 855
Eco53kI	GAGCTC	2 cut(s)	325, 493
Eco57I	CTGAAG	2 cut(s)	285, 322
Eco81I	CCTNAGG	1 cut(s)	500
EcoICRI	GAGCTC	2 cut(s)	325, 493
EcoRII	CCWGG	3 cut(s)	436, 801, 832
EcoT38I	GRGCYC	2 cut(s)	327, 495
FalI	AAGNNNNNCTT	2 cut(s)	906, 938
FaqI	GGGAC	2 cut(s)	457, 868
FauNDI	CATATG	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	408
FblI	GTMKAC	4 cut(s)	24, 635, 719, 768
Fnu4HI	GCNGC	5 cut(s)	69, 396, 506, 780, 783
FokI	GGATG	2 cut(s)	208, 482
FriOI	GRGCYC	2 cut(s)	327, 495
Fsp4HI	GCNGC	5 cut(s)	69, 396, 506, 780, 783
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	1 cut(s)	778
GluI	GCNGC	5 cut(s)	69, 396, 506, 780, 783
HaeIII	GGCC	3 cut(s)	288, 427, 505
HapII	CCGG	1 cut(s)	422
HhaI	GCGC	1 cut(s)	779
Hin6I	GCGC	1 cut(s)	777
HinP1I	GCGC	1 cut(s)	777
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	2 cut(s)	271, 878
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	4 cut(s)	16, 164, 418, 504
Hpy166II	GTNNAC	8 cut(s)	25, 313, 419, 636, 720, 769, 839, 907
Hpy188I	TCNGA	5 cut(s)	146, 265, 329, 675, 883
Hpy188III	TCNNGA	5 cut(s)	416, 473, 626, 853, 943
Hpy8I	GTNNAC	8 cut(s)	25, 313, 419, 636, 720, 769, 839, 907
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	6 cut(s)	29, 305, 485, 640, 682, 898
HpyCH4V	TGCA	4 cut(s)	245, 308, 740, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	746
HpyF3I	CTNAG	3 cut(s)	290, 500, 672
HspAI	GCGC	1 cut(s)	777
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	6 cut(s)	118, 260, 408, 469, 556, 659
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	4 cut(s)	80, 382, 791, 794
MabI	ACCWGGT	2 cut(s)	436, 832
MaeI	CTAG	1 cut(s)	602
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	6 cut(s)	120, 262, 410, 471, 558, 661
MboI	GATC	6 cut(s)	118, 260, 408, 469, 556, 659
MboII	GAAGA	3 cut(s)	222, 278, 926
MflI	RGATCY	2 cut(s)	260, 659
MhlI	GDGCHC	2 cut(s)	327, 495
MluCI	AATT	8 cut(s)	275, 317, 351, 387, 822, 846, 925, 938
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	2 cut(s)	299, 509
MroXI	GAANNNNTTC	2 cut(s)	105, 387
MseI	TTAA	7 cut(s)	59, 159, 171, 525, 540, 924, 933
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	4 cut(s)	423, 438, 803, 834
Mva1269I	GAATGC	1 cut(s)	869
MvaI	CCWGG	3 cut(s)	438, 803, 834
MwoI	GCNNNNNNNGC	1 cut(s)	746
NciI	CCSGG	1 cut(s)	423
NdeI	CATATG	1 cut(s)	531
NdeII	GATC	6 cut(s)	118, 260, 408, 469, 556, 659
NlaIV	GGNNCC	3 cut(s)	426, 661, 856
NmuCI	GTSAC	1 cut(s)	709
OliI	CACNNNNGTG	1 cut(s)	303
PctI	GAATGC	1 cut(s)	869
PdmI	GAANNNNTTC	2 cut(s)	105, 387
PfeI	GAWTC	1 cut(s)	878
PflMI	CCANNNNNTGG	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	801
PkrI	GCNGC	5 cut(s)	70, 397, 507, 781, 784
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PshAI	GACNNNNGTC	1 cut(s)	680
PshBI	ATTAAT	1 cut(s)	159
Psp124BI	GAGCTC	2 cut(s)	327, 495
Psp6I	CCWGG	3 cut(s)	436, 801, 832
PspGI	CCWGG	3 cut(s)	436, 801, 832
PspN4I	GGNNCC	3 cut(s)	426, 661, 856
PspPI	GGNCC	4 cut(s)	286, 425, 836, 855
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	2 cut(s)	260, 659
PvuII	CAGCTG	1 cut(s)	785
RsaI	GTAC	2 cut(s)	11, 614
RsaNI	GTAC	2 cut(s)	10, 613
RseI	CAYNNNNRTG	1 cut(s)	303
SacI	GAGCTC	2 cut(s)	327, 495
SaqAI	TTAA	7 cut(s)	59, 159, 171, 525, 540, 924, 933
SatI	GCNGC	5 cut(s)	69, 396, 506, 780, 783
Sau3AI	GATC	6 cut(s)	118, 260, 408, 469, 556, 659
Sau96I	GGNCC	4 cut(s)	286, 425, 836, 855
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	4 cut(s)	423, 438, 803, 834
SduI	GDGCHC	2 cut(s)	327, 495
SexAI	ACCWGGT	2 cut(s)	436, 832
SfcI	CTRYAG	2 cut(s)	481, 639
SinI	GGWCC	2 cut(s)	836, 855
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
SpeI	ACTAGT	1 cut(s)	601
Sse9I	AATT	8 cut(s)	275, 317, 351, 387, 822, 846, 925, 938
SsiI	CCGC	1 cut(s)	506
SspMI	CTAG	1 cut(s)	602
SstI	GAGCTC	2 cut(s)	327, 495
StyD4I	CCNGG	4 cut(s)	421, 436, 801, 832
TaaI	ACNGT	6 cut(s)	29, 305, 485, 640, 682, 898
TaqI	TCGA	5 cut(s)	163, 391, 489, 687, 826
TasI	AATT	8 cut(s)	275, 317, 351, 387, 822, 846, 925, 938
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	1 cut(s)	878
Tru1I	TTAA	7 cut(s)	59, 159, 171, 525, 540, 924, 933
Tru9I	TTAA	7 cut(s)	59, 159, 171, 525, 540, 924, 933
TscAI	CASTG	3 cut(s)	310, 763, 871
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	4 cut(s)	68, 395, 779, 782
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	4 cut(s)	31, 212, 608, 927
TspRI	CASTG	3 cut(s)	310, 763, 871
Van91I	CCANNNNNTGG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	836, 855
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 809
XmiI	GTMKAC	4 cut(s)	24, 635, 719, 768
XmnI	GAANNNNTTC	2 cut(s)	105, 387
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.