Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Forward (+)

66325182 .. 66328005

Gene Structure 2824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTTGTTAGGATCATCTACTATTCTGCCATGTTTTGAAACCAAAAAGATTCATACCCATCTTCTTATAATTAATAGATTGGATCAGTTAAGCATGGCAGCTCCAAATAATCCCCATGACGATGTATTGGAATGGGTGCAAAAAGATAATCGTCGTTTCCTACGTGCCAATATCCGAGTTGGTGATCTTGATCGAACTATTAAGTTTTACACAGAATTTTTTGGGATGAAAGTGTTGAGCAGGCAAGATTTCCCAGAACAAAAATACTCAACTGCAGTCGTTGCGTATGGACCCGAAGAGACTCATTTTGTTCTAGGGCTCACACACCACCGTATGATAGCTATCCTCTTAACTAACGATGCAGCGGACAAGTTAGACATCGGAACAGCCTTCAATCATTTTGGACTTGCAACCCAAGATGTTTATGGAACGGTTGAAAAAATCCGAGCGGCAGGTGGAGTGATCACACGTGAACCAGGGCCAATTGCAGAGGGTGGGAGGACCATCTTTGCCTTTGTGAACGATCCCGACGGCTACAGTTTTGAGCTCATCCTCAGGCCCCCAACTCCAGAACCACTGTGTCAAATATGTCTGAATGTAAATGATATTGATCGTTCAATTGAATTCTACCAAAAGGCAGTGGGAATGAATCTACTGTTGCCAAAGTACGATGCTTCTCAGTTCCAGTATACTATAGCGATGGTGGGTTATGGTTCCGATTTTACTCAGACGACGATTATCGAGTTGAAATATAACTATAATGTGACAGAGTATACCAAAGGAAATGGATATGCAATGCTTGCTATCGGCACTGATGATGTATACAAGAGCGGAGCAGCTGTTGAACTGGTTAACAAGGAACTTGGAGGGAAAATAATTCGACCCCCGGCTGTAAATCCCAAAACCAACACCAAAATCACCTGCTTTCTTGATTCTGATGGGTTTGAATCGGTATTGGTGGACAATCAAGACTATGTTGGCTTTCTTGGAAAATCAAAGGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

335

Amino Acids

37.43

Weight (kDa)

5.35

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	54 - 183	3.8e-19	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	58 - 167	3.7e-06	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	195 - 316	1.4e-08	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AarI	CACCTGC	2 cut(s)	443, 929
Acc36I	ACCTGC	2 cut(s)	443, 929
AccBSI	CCGCTC	2 cut(s)	449, 831
AccI	GTMKAC	3 cut(s)	689, 773, 822
AciI	CCGC	3 cut(s)	365, 449, 831
AclWI	GGATC	3 cut(s)	19, 90, 518
AcsI	RAATTY	2 cut(s)	215, 623
AcvI	CACGTG	1 cut(s)	470
AfaI	GTAC	1 cut(s)	668
AflIII	ACRYGT	1 cut(s)	467
AgsI	TTSAA	8 cut(s)	38, 394, 437, 618, 623, 748, 845, 947
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	4 cut(s)	101, 341, 547, 839
AluI	AGCT	4 cut(s)	101, 341, 547, 839
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	3 cut(s)	19, 90, 518
AoxI	GGCC	2 cut(s)	479, 557
ApeKI	GCWGC	3 cut(s)	98, 362, 836
ApoI	RAATTY	2 cut(s)	215, 623
AseI	ATTAAT	1 cut(s)	72
AspS9I	GGNCC	4 cut(s)	290, 479, 501, 558
AsuC2I	CCSGG	1 cut(s)	887
AsuHPI	GGTGA	2 cut(s)	194, 910
AvaII	GGWCC	2 cut(s)	290, 501
AxyI	CCTNAGG	1 cut(s)	554
BanII	GRGCYC	2 cut(s)	321, 549
BbrPI	CACGTG	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	110, 374, 848
BccI	CCATC	4 cut(s)	66, 512, 694, 932
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	477
BclI	TGATCA	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	887
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	3 cut(s)	273, 535, 693
BfuAI	ACCTGC	2 cut(s)	443, 929
BisI	GCNGC	4 cut(s)	99, 363, 450, 837
BlsI	GCNGC	4 cut(s)	100, 364, 451, 838
Bme1390I	CCNGG	2 cut(s)	477, 887
Bme18I	GGWCC	2 cut(s)	290, 501
BmgT120I	GGNCC	4 cut(s)	290, 479, 501, 558
BmiI	GGNNCC	3 cut(s)	292, 560, 715
BmrFI	CCNGG	2 cut(s)	477, 887
BmsI	GCATC	2 cut(s)	349, 661
BpmI	CTGGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	887
BsaAI	YACGTR	2 cut(s)	164, 470
BsaBI	GATNNNNATC	3 cut(s)	189, 341, 609
BsaJI	CCNNGG	2 cut(s)	476, 885
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bse1I	ACTGG	2 cut(s)	685, 852
Bse21I	CCTNAGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	801
Bse8I	GATNNNNATC	3 cut(s)	189, 341, 609
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	476, 885
BseGI	GGATG	3 cut(s)	231, 549, 1006
BseJI	GATNNNNATC	3 cut(s)	189, 341, 609
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	3 cut(s)	568, 692, 740
BseNI	ACTGG	2 cut(s)	685, 852
BseXI	GCAGC	3 cut(s)	110, 374, 848
BshFI	GGCC	2 cut(s)	481, 559
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	887
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	481, 559
Bsp1286I	GDGCHC	2 cut(s)	321, 549
Bsp143I	GATC	7 cut(s)	11, 82, 184, 190, 462, 523, 610
BspACI	CCGC	3 cut(s)	365, 449, 831
BspANI	GGCC	2 cut(s)	481, 559
BspCNI	CTCAG	3 cut(s)	567, 691, 739
BspLI	GGNNCC	3 cut(s)	292, 560, 715
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	2 cut(s)	443, 929
BspPI	GGATC	3 cut(s)	19, 90, 518
BsrBI	CCGCTC	2 cut(s)	449, 831
BsrDI	GCAATG	1 cut(s)	801
BsrI	ACTGG	2 cut(s)	685, 852
BssECI	CCNNGG	2 cut(s)	476, 885
BssMI	GATC	7 cut(s)	11, 82, 184, 190, 462, 523, 610
BssNAI	GTATAC	3 cut(s)	690, 774, 823
Bst1107I	GTATAC	3 cut(s)	690, 774, 823
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	5 cut(s)	332, 433, 539, 579, 657
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	2 cut(s)	281, 800
BstBAI	YACGTR	2 cut(s)	164, 470
BstC8I	GCNNGC	2 cut(s)	242, 801
BstDEI	CTNAG	3 cut(s)	554, 678, 726
BstF5I	GGATG	3 cut(s)	231, 549, 1006
BstKTI	GATC	7 cut(s)	14, 85, 187, 193, 465, 526, 613
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	7 cut(s)	11, 82, 184, 190, 462, 523, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 800
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	2 cut(s)	475, 885
BstSFI	CTRYAG	3 cut(s)	273, 535, 693
BstV1I	GCAGC	3 cut(s)	110, 374, 848
BstZ17I	GTATAC	3 cut(s)	690, 774, 823
Bsu36I	CCTNAGG	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	481, 559
BtgZI	GCGATG	1 cut(s)	713
BtsCI	GGATG	3 cut(s)	231, 549, 1006
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	3 cut(s)	575, 645, 810
BveI	ACCTGC	2 cut(s)	443, 929
Cac8I	GCNNGC	2 cut(s)	242, 801
Cfr13I	GGNCC	4 cut(s)	290, 479, 501, 558
Csp6I	GTAC	1 cut(s)	667
CviAII	CATG	3 cut(s)	30, 94, 116
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	3 cut(s)	554, 678, 726
DpnI	GATC	7 cut(s)	13, 84, 186, 192, 464, 525, 612
DpnII	GATC	7 cut(s)	11, 82, 184, 190, 462, 523, 610
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	321, 549
Eco47I	GGWCC	2 cut(s)	290, 501
Eco53kI	GAGCTC	1 cut(s)	547
Eco72I	CACGTG	1 cut(s)	470
Eco81I	CCTNAGG	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	475
EcoT38I	GRGCYC	2 cut(s)	321, 549
FaeI	CATG	3 cut(s)	33, 97, 119
FatI	CATG	3 cut(s)	29, 93, 115
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	3 cut(s)	689, 773, 822
Fnu4HI	GCNGC	4 cut(s)	99, 363, 450, 837
FokI	GGATG	2 cut(s)	238, 536
FriOI	GRGCYC	2 cut(s)	321, 549
Fsp4HI	GCNGC	4 cut(s)	99, 363, 450, 837
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	4 cut(s)	99, 363, 450, 837
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	481, 559
HapII	CCGG	1 cut(s)	887
Hin1II	CATG	3 cut(s)	33, 97, 119
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HinfI	GANTC	5 cut(s)	49, 301, 649, 932, 947
HpaI	GTTAAC	1 cut(s)	853
HpaII	CCGG	1 cut(s)	887
HphI	GGTGA	2 cut(s)	194, 910
Hpy166II	GTNNAC	7 cut(s)	473, 520, 690, 774, 823, 853, 961
Hpy188I	TCNGA	7 cut(s)	176, 383, 446, 594, 718, 729, 937
Hpy188III	TCNNGA	5 cut(s)	188, 527, 569, 929, 968
Hpy8I	GTNNAC	7 cut(s)	473, 520, 690, 774, 823, 853, 961
Hpy99I	CGWCG	3 cut(s)	156, 533, 736
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	5 cut(s)	332, 433, 539, 579, 657
HpyCH4IV	ACGT	2 cut(s)	163, 469
HpyCH4V	TGCA	6 cut(s)	139, 275, 362, 410, 488, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 800
HpyF3I	CTNAG	3 cut(s)	554, 678, 726
HpySE526I	ACGT	2 cut(s)	163, 469
Hsp92II	CATG	3 cut(s)	33, 97, 119
Ksp22I	TGATCA	1 cut(s)	462
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	7 cut(s)	11, 82, 184, 190, 462, 523, 610
LmnI	GCTCC	2 cut(s)	106, 833
Lsp1109I	GCAGC	3 cut(s)	110, 374, 848
LweI	GCATC	2 cut(s)	349, 661
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	2 cut(s)	163, 469
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	7 cut(s)	13, 84, 186, 192, 464, 525, 612
MbiI	CCGCTC	2 cut(s)	449, 831
MboI	GATC	7 cut(s)	11, 82, 184, 190, 462, 523, 610
MboII	GAAGA	2 cut(s)	53, 308
MfeI	CAATTG	2 cut(s)	483, 618
MhlI	GDGCHC	2 cut(s)	321, 549
MluCI	AATT	6 cut(s)	69, 215, 483, 618, 623, 876
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	5 cut(s)	356, 484, 492, 563, 860
MseI	TTAA	5 cut(s)	72, 89, 201, 350, 852
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	2 cut(s)	365, 839
MspI	CCGG	1 cut(s)	887
MspR9I	CCNGG	2 cut(s)	477, 887
MunI	CAATTG	2 cut(s)	483, 618
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	281, 800
NciI	CCSGG	1 cut(s)	887
NdeII	GATC	7 cut(s)	11, 82, 184, 190, 462, 523, 610
NlaIII	CATG	3 cut(s)	33, 97, 119
NlaIV	GGNNCC	3 cut(s)	292, 560, 715
NmuCI	GTSAC	1 cut(s)	763
PaqCI	CACCTGC	2 cut(s)	443, 929
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PfeI	GAWTC	4 cut(s)	49, 649, 932, 947
PkrI	GCNGC	4 cut(s)	100, 364, 451, 838
PleI	GAGTC	1 cut(s)	295
PmaCI	CACGTG	1 cut(s)	470
PmlI	CACGTG	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	2 cut(s)	164, 470
PshBI	ATTAAT	1 cut(s)	72
PsiI	TTATAA	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	475
PspCI	CACGTG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	3 cut(s)	292, 560, 715
PspPI	GGNCC	4 cut(s)	290, 479, 501, 558
PstI	CTGCAG	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	839
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	5 cut(s)	72, 89, 201, 350, 852
SatI	GCNGC	4 cut(s)	99, 363, 450, 837
Sau3AI	GATC	7 cut(s)	11, 82, 184, 190, 462, 523, 610
Sau96I	GGNCC	4 cut(s)	290, 479, 501, 558
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	477, 887
SduI	GDGCHC	2 cut(s)	321, 549
SetI	ASST	8 cut(s)	103, 166, 343, 457, 472, 549, 841, 923
SfaNI	GCATC	2 cut(s)	349, 661
SfcI	CTRYAG	3 cut(s)	273, 535, 693
SinI	GGWCC	2 cut(s)	290, 501
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	6 cut(s)	69, 215, 483, 618, 623, 876
SsiI	CCGC	3 cut(s)	365, 449, 831
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	475, 885
TaaI	ACNGT	5 cut(s)	332, 433, 539, 579, 657
TaiI	ACGT	2 cut(s)	166, 472
TaqI	TCGA	3 cut(s)	193, 741, 880
TasI	AATT	6 cut(s)	69, 215, 483, 618, 623, 876
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	4 cut(s)	49, 649, 932, 947
Tru1I	TTAA	5 cut(s)	72, 89, 201, 350, 852
Tru9I	TTAA	5 cut(s)	72, 89, 201, 350, 852
TscAI	CASTG	3 cut(s)	582, 645, 817
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	3 cut(s)	98, 362, 836
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	3 cut(s)	41, 242, 662
TspRI	CASTG	3 cut(s)	582, 645, 817
VpaK11BI	GGWCC	2 cut(s)	290, 501
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	2 cut(s)	215, 623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XmiI	GTMKAC	3 cut(s)	689, 773, 822
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.