Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Reverse (-)

12271061 .. 12273078

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0136200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGCCTCCGCCAGCACGGCCCTCGAGGTCGACCAATCCCCAGTATGGATATAAAACCTTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCTCTAGCAAAGGAGTTAGGCAAGTGGAATGAAGTTGCTGATTTTTACAGAAGGGCATCTGAATTATACACTGTGTGCGGAAGAGCACAGCCTGCATCAGATGCTCTTGCAAAAGGAGCCCGAGCTATAATTAGTCTTCTTGTACCTTGTTTTACAGAAACTACCATCCTTGTGGCATCTATTCATGCATATCTTAGTGCAATTCTCATATACCTGTATATTCATGACGTCAAGCAGGCAGAAAAATGCTACAACGATTGCTCCCAGGTCGATGCTTTTTTGGGCAATGATCATGGCCGATGTGCTAGTAAACTTCTTTCCGCATACACAGAAGGTGATATTGAAGAAATCAAACGACTTGCTCAGTCAAGCGCAGTTTCTCATCTTGATCACATGGTCATCAGACTCGCCAGGAAACTGCCTACAGGTGATGTCAGTGGACTAAAGACAAATGCGTCCAAAGAGCAAGAAGAAGAATTGGATGAAGATGACCTCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

197

Amino Acids

21.7

Weight (kDa)

5.8

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	547
AatII	GACGTC	1 cut(s)	324
AbsI	CCTCGAGG	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	31
AciI	CCGC	3 cut(s)	10, 171, 414
AcoI	YGGCCR	1 cut(s)	388
AcyI	GRCGYC	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	437
AjnI	CCWGG	2 cut(s)	357, 503
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw21I	GWGCWC	1 cut(s)	181
Ama87I	CYCGRG	2 cut(s)	24, 213
AoxI	GGCC	3 cut(s)	4, 19, 388
ApeKI	GCWGC	3 cut(s)	68, 89, 92
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	4, 20
AsuHPI	GGTGA	2 cut(s)	440, 533
AvaI	CYCGRG	2 cut(s)	24, 213
BanII	GRGCYC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	3 cut(s)	55, 76, 79
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	34
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	2 cut(s)	359, 505
BclI	TGATCA	2 cut(s)	382, 481
BfaI	CTAG	2 cut(s)	98, 399
BfmI	CTRYAG	1 cut(s)	516
BglI	GCCNNNNNGGC	1 cut(s)	18
BisI	GCNGC	3 cut(s)	69, 90, 93
BlsI	GCNGC	3 cut(s)	70, 91, 94
Bme1390I	CCNGG	2 cut(s)	359, 505
BmeT110I	CYCGRG	2 cut(s)	24, 213
BmgT120I	GGNCC	2 cut(s)	4, 20
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	359, 505
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	6 cut(s)	55, 158, 184, 197, 278, 355
BmuI	ACTGGG	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	59, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	359, 505
BseDI	CCNNGG	2 cut(s)	59, 357
BseGI	GGATG	3 cut(s)	70, 258, 580
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	55, 76, 79
BshFI	GGCC	3 cut(s)	6, 21, 390
BsiHKAI	GWGCWC	1 cut(s)	181
BsiHKCI	CYCGRG	2 cut(s)	24, 213
BslI	CCNNNNNNNGG	1 cut(s)	46
BsnI	GGCC	3 cut(s)	6, 21, 390
BsoBI	CYCGRG	2 cut(s)	24, 213
Bsp1286I	GDGCHC	2 cut(s)	181, 214
Bsp143I	GATC	2 cut(s)	382, 481
BspACI	CCGC	3 cut(s)	10, 171, 414
BspANI	GGCC	3 cut(s)	6, 21, 390
BspCNI	CTCAG	1 cut(s)	469
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	211
BspQI	GCTCTTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	59, 357
BssMI	GATC	2 cut(s)	382, 481
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	359, 505
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	321
BstAPI	GCANNNNNTGC	2 cut(s)	185, 194
BstC8I	GCNNGC	3 cut(s)	14, 186, 330
BstDEI	CTNAG	2 cut(s)	287, 456
BstF5I	GGATG	3 cut(s)	70, 258, 580
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	2 cut(s)	385, 484
BstMBI	GATC	2 cut(s)	382, 481
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 98, 185, 194, 209
BstNI	CCWGG	2 cut(s)	359, 505
BstSCI	CCNGG	2 cut(s)	357, 503
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	55, 76, 79
BstV2I	GAAGAC	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	265
BsuRI	GGCC	3 cut(s)	6, 21, 390
BtsCI	GGATG	3 cut(s)	70, 258, 580
BtsIMutI	CAGTG	2 cut(s)	162, 535
Cac8I	GCNNGC	3 cut(s)	14, 186, 330
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	4, 20
CseI	GACGC	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	4 cut(s)	278, 317, 386, 487
CviJI	RGCY	6 cut(s)	6, 21, 184, 212, 218, 390
CviKI_1	RGCY	6 cut(s)	6, 21, 184, 212, 218, 390
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	287, 456
DpnI	GATC	2 cut(s)	384, 483
DpnII	GATC	2 cut(s)	382, 481
DraIII	CACNNNGTG	1 cut(s)	168
DrdI	GACNNNNNNGTC	1 cut(s)	547
DseDI	GACNNNNNNGTC	1 cut(s)	547
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	214
Eco88I	CYCGRG	2 cut(s)	24, 213
EcoRII	CCWGG	2 cut(s)	357, 503
EcoT14I	CCWWGG	1 cut(s)	59
EcoT22I	ATGCAT	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	4 cut(s)	281, 320, 389, 490
FatI	CATG	4 cut(s)	277, 316, 385, 486
FauNDI	CATATG	1 cut(s)	78
FbaI	TGATCA	2 cut(s)	382, 481
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	69, 90, 93
FokI	GGATG	3 cut(s)	77, 245, 587
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	3 cut(s)	69, 90, 93
FspBI	CTAG	2 cut(s)	98, 399
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	3 cut(s)	69, 90, 93
HaeIII	GGCC	3 cut(s)	6, 21, 390
HgaI	GACGC	1 cut(s)	537
HhaI	GCGC	1 cut(s)	467
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	281, 320, 389, 490
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	32
HindII	GTYRAC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	83, 498
HphI	GGTGA	2 cut(s)	440, 533
Hpy166II	GTNNAC	3 cut(s)	32, 404, 533
Hpy188I	TCNGA	3 cut(s)	154, 193, 497
Hpy188III	TCNNGA	2 cut(s)	317, 479
Hpy8I	GTNNAC	3 cut(s)	32, 404, 533
HpyAV	CCTTC	2 cut(s)	138, 419
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	5 cut(s)	71, 188, 203, 281, 293
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 98, 185, 194, 209
HpyF3I	CTNAG	2 cut(s)	287, 456
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	281, 320, 389, 490
HspAI	GCGC	1 cut(s)	465
Ksp22I	TGATCA	2 cut(s)	382, 481
Kzo9I	GATC	2 cut(s)	382, 481
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	209, 359
Lsp1109I	GCAGC	3 cut(s)	55, 76, 79
LweI	GCATC	6 cut(s)	55, 158, 184, 197, 278, 355
MaeI	CTAG	2 cut(s)	98, 399
MaeII	ACGT	1 cut(s)	321
MalI	GATC	2 cut(s)	384, 483
MboI	GATC	2 cut(s)	382, 481
MboII	GAAGA	6 cut(s)	186, 221, 449, 575, 578, 590
MhlI	GDGCHC	2 cut(s)	181, 214
MluCI	AATT	4 cut(s)	155, 222, 294, 569
MlyI	GAGTC	2 cut(s)	92, 492
MnlI	CCTC	3 cut(s)	17, 20, 33
Mph1103I	ATGCAT	1 cut(s)	283
MslI	CAYNNNNRTG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	359, 505
MvaI	CCWGG	2 cut(s)	359, 505
MwoI	GCNNNNNNNGC	5 cut(s)	18, 98, 185, 194, 209
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	2 cut(s)	382, 481
NlaIII	CATG	4 cut(s)	281, 320, 389, 490
NlaIV	GGNNCC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	24
PagI	TCATGA	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	70, 91, 94
PleI	GAGTC	2 cut(s)	91, 492
PpsI	GAGTC	2 cut(s)	91, 492
Psp6I	CCWGG	2 cut(s)	357, 503
PspGI	CCWGG	2 cut(s)	357, 503
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	4, 20
PspXI	VCTCGAGB	1 cut(s)	24
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	30
SapI	GCTCTTC	1 cut(s)	169
SatI	GCNGC	3 cut(s)	69, 90, 93
Sau3AI	GATC	2 cut(s)	382, 481
Sau96I	GGNCC	2 cut(s)	4, 20
SchI	GAGTC	2 cut(s)	92, 492
ScrFI	CCNGG	2 cut(s)	359, 505
SduI	GDGCHC	2 cut(s)	181, 214
SfaNI	GCATC	6 cut(s)	55, 158, 184, 197, 278, 355
SfcI	CTRYAG	1 cut(s)	516
Sfr274I	CTCGAG	1 cut(s)	24
SlaI	CTCGAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	4 cut(s)	155, 222, 294, 569
SsiI	CCGC	3 cut(s)	10, 171, 414
SspMI	CTAG	2 cut(s)	98, 399
StyD4I	CCNGG	2 cut(s)	357, 503
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	3 cut(s)	25, 31, 363
TasI	AATT	4 cut(s)	155, 222, 294, 569
TscAI	CASTG	2 cut(s)	169, 535
TseI	GCWGC	3 cut(s)	68, 89, 92
TspDTI	ATGAA	4 cut(s)	138, 266, 305, 591
TspRI	CASTG	2 cut(s)	169, 535
XhoI	CTCGAG	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	2 cut(s)	98, 399
ZraI	GACGTC	1 cut(s)	322
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.