Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Reverse (-)

26721746 .. 26724537

Gene Structure 2792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG234400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGTCAGGTTTTACACAGAATTTTTTGGGATGAAAGTGTTGAGCAGGCAAGATTTCCCAGAACAAAAATACTCAACTGCAGTCGTTGCGTATGGACCCGAAGAGACTCATTTTGTTCTAGGGCTCACACACCACCACGATGCAGCGGACAAGTTAGACATCGGAACAGCCTTCAATCATTTTGGACTTGCAACCCAAGATGTTTATGGAACAATTGAAAAAATCCGAGCGGCAGGTGGAGTGATCACACGTGAACCAGGGCCAATTGCAGAGGGTGGGAGGACCATCTTTGCCTTCGTGAACGATCCCGACGGCTACAGTTTTGAGCTCATCCTCAGGCCCCCAACTCCAGAACCACTGTGTCAAATATGTCTTAATGTGACTGATATTGATCGTTCAATTGAATTCTACCAAAAGGCATTGGGAATGAACCTACTATTGCCAAAGTACGACGCTTCTCAGTTCCAGTATACTATAGCGATGGTGGGTTATGGTTCCGATTTTACTCAGACGACGATTATCGAGTTGAAATATAACTATAATGTGACAGAGTATACGAAAGGAAATGGATATGCAATGCTTGCTATCGGCACTGATGATGTATACAAGAGCGGAGCAGCTGTTGAACTAGTGAACAAGGAACATGGAGGGGAAATAATTCGACCCCCGGCTGTAAATCCCAAAACCAACACCAAAATCACCTGCTTCCTTGATTCTGATGGGTTTGAATCGGTAATTAAACCCCTTTCTCTTTTCTTTTCTTATTGGTTTCTTTCATTATATTCACACATCACAGTAAAAAAGGAAAATTTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

272

Amino Acids

30.53

Weight (kDa)

5.39

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	2 - 110	7.5e-15	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	122 - 243	4.1e-10	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	224, 710
Acc36I	ACCTGC	2 cut(s)	224, 710
AccBSI	CCGCTC	2 cut(s)	230, 612
AccI	GTMKAC	3 cut(s)	470, 554, 603
AciI	CCGC	3 cut(s)	146, 230, 612
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	3 cut(s)	20, 404, 808
AcvI	CACGTG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	248
AgsI	TTSAA	7 cut(s)	175, 218, 399, 404, 529, 626, 728
AhlI	ACTAGT	1 cut(s)	628
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	2 cut(s)	328, 620
AluI	AGCT	2 cut(s)	328, 620
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	2 cut(s)	260, 338
ApeKI	GCWGC	2 cut(s)	143, 617
ApoI	RAATTY	3 cut(s)	20, 404, 808
Asp700I	GAANNNNTTC	2 cut(s)	657, 810
AspS9I	GGNCC	4 cut(s)	95, 260, 282, 339
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	691
AvaII	GGWCC	2 cut(s)	95, 282
AxyI	CCTNAGG	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	126, 330
BbrPI	CACGTG	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	155, 629
BccI	CCATC	3 cut(s)	293, 475, 713
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	1 cut(s)	98
BcuI	ACTAGT	1 cut(s)	628
BfaI	CTAG	2 cut(s)	119, 629
BfmI	CTRYAG	3 cut(s)	78, 316, 474
BfuAI	ACCTGC	2 cut(s)	224, 710
BisI	GCNGC	3 cut(s)	144, 231, 618
BlsI	GCNGC	3 cut(s)	145, 232, 619
Bme1390I	CCNGG	2 cut(s)	258, 668
Bme18I	GGWCC	2 cut(s)	95, 282
BmgT120I	GGNCC	4 cut(s)	95, 260, 282, 339
BmiI	GGNNCC	3 cut(s)	97, 341, 496
BmrFI	CCNGG	2 cut(s)	258, 668
BmsI	GCATC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	668
BsaAI	YACGTR	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	257, 666
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bse1I	ACTGG	1 cut(s)	466
Bse21I	CCTNAGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	257, 666
BseGI	GGATG	2 cut(s)	36, 330
BseJI	GATNNNNATC	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	3 cut(s)	349, 473, 521
BseNI	ACTGG	1 cut(s)	466
BseXI	GCAGC	2 cut(s)	155, 629
BshFI	GGCC	2 cut(s)	262, 340
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	668
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	262, 340
Bsp1286I	GDGCHC	2 cut(s)	126, 330
Bsp143I	GATC	3 cut(s)	243, 304, 391
BspACI	CCGC	3 cut(s)	146, 230, 612
BspANI	GGCC	2 cut(s)	262, 340
BspCNI	CTCAG	3 cut(s)	348, 472, 520
BspLI	GGNNCC	3 cut(s)	97, 341, 496
BspMAI	CTGCAG	1 cut(s)	82
BspMI	ACCTGC	2 cut(s)	224, 710
BspPI	GGATC	1 cut(s)	299
BsrBI	CCGCTC	2 cut(s)	230, 612
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	2 cut(s)	257, 666
BssMI	GATC	3 cut(s)	243, 304, 391
BssNAI	GTATAC	3 cut(s)	471, 555, 604
Bst1107I	GTATAC	3 cut(s)	471, 555, 604
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	3 cut(s)	320, 360, 796
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	2 cut(s)	86, 581
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	47, 582
BstDEI	CTNAG	3 cut(s)	335, 459, 507
BstF5I	GGATG	2 cut(s)	36, 330
BstKTI	GATC	3 cut(s)	246, 307, 394
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	243, 304, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 581
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	2 cut(s)	256, 666
BstSFI	CTRYAG	3 cut(s)	78, 316, 474
BstV1I	GCAGC	2 cut(s)	155, 629
BstZ17I	GTATAC	3 cut(s)	471, 555, 604
Bsu36I	CCTNAGG	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	262, 340
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	2 cut(s)	36, 330
BtsIMutI	CAGTG	2 cut(s)	356, 591
BveI	ACCTGC	2 cut(s)	224, 710
Cac8I	GCNNGC	2 cut(s)	47, 582
Cfr13I	GGNCC	4 cut(s)	95, 260, 282, 339
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	1 cut(s)	644
CviJI	RGCY	8 cut(s)	124, 170, 262, 315, 328, 340, 620, 671
CviKI_1	RGCY	8 cut(s)	124, 170, 262, 315, 328, 340, 620, 671
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	3 cut(s)	335, 459, 507
DpnI	GATC	3 cut(s)	245, 306, 393
DpnII	GATC	3 cut(s)	243, 304, 391
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	2 cut(s)	126, 330
Eco47I	GGWCC	2 cut(s)	95, 282
Eco53kI	GAGCTC	1 cut(s)	328
Eco72I	CACGTG	1 cut(s)	251
Eco81I	CCTNAGG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	256
EcoT38I	GRGCYC	2 cut(s)	126, 330
FaeI	CATG	1 cut(s)	647
FatI	CATG	1 cut(s)	643
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	3 cut(s)	470, 554, 603
Fnu4HI	GCNGC	3 cut(s)	144, 231, 618
FokI	GGATG	2 cut(s)	43, 317
FriOI	GRGCYC	2 cut(s)	126, 330
Fsp4HI	GCNGC	3 cut(s)	144, 231, 618
FspBI	CTAG	2 cut(s)	119, 629
GluI	GCNGC	3 cut(s)	144, 231, 618
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	262, 340
HapII	CCGG	1 cut(s)	668
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	1 cut(s)	647
HinfI	GANTC	3 cut(s)	106, 713, 728
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	1 cut(s)	691
Hpy166II	GTNNAC	6 cut(s)	254, 301, 471, 555, 604, 634
Hpy188I	TCNGA	5 cut(s)	164, 227, 499, 510, 718
Hpy188III	TCNNGA	3 cut(s)	298, 308, 350
Hpy8I	GTNNAC	6 cut(s)	254, 301, 471, 555, 604, 634
Hpy99I	CGWCG	3 cut(s)	314, 455, 517
HpyAV	CCTTC	2 cut(s)	181, 304
HpyCH4III	ACNGT	3 cut(s)	320, 360, 796
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	5 cut(s)	80, 143, 191, 269, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 581
HpyF3I	CTNAG	3 cut(s)	335, 459, 507
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	243, 304, 391
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	2 cut(s)	155, 629
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	119, 629
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	2 cut(s)	379, 544
MalI	GATC	3 cut(s)	245, 306, 393
MbiI	CCGCTC	2 cut(s)	230, 612
MboI	GATC	3 cut(s)	243, 304, 391
MboII	GAAGA	1 cut(s)	113
MfeI	CAATTG	3 cut(s)	213, 264, 399
MhlI	GDGCHC	2 cut(s)	126, 330
MluCI	AATT	8 cut(s)	20, 213, 264, 399, 404, 657, 735, 808
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	4 cut(s)	265, 273, 344, 641
MroXI	GAANNNNTTC	2 cut(s)	657, 810
MseI	TTAA	2 cut(s)	375, 738
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	2 cut(s)	146, 620
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	2 cut(s)	258, 668
MunI	CAATTG	3 cut(s)	213, 264, 399
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	86, 581
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	3 cut(s)	243, 304, 391
NlaIII	CATG	1 cut(s)	647
NlaIV	GGNNCC	3 cut(s)	97, 341, 496
NmuCI	GTSAC	2 cut(s)	379, 544
PaqCI	CACCTGC	2 cut(s)	224, 710
PdmI	GAANNNNTTC	2 cut(s)	657, 810
PfeI	GAWTC	2 cut(s)	713, 728
PkrI	GCNGC	3 cut(s)	145, 232, 619
PleI	GAGTC	1 cut(s)	100
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	256
PspCI	CACGTG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	97, 341, 496
PspPI	GGNCC	4 cut(s)	95, 260, 282, 339
PstI	CTGCAG	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	375, 738
SatI	GCNGC	3 cut(s)	144, 231, 618
Sau3AI	GATC	3 cut(s)	243, 304, 391
Sau96I	GGNCC	4 cut(s)	95, 260, 282, 339
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	258, 668
SduI	GDGCHC	2 cut(s)	126, 330
SetI	ASST	7 cut(s)	11, 238, 253, 330, 435, 622, 704
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	3 cut(s)	78, 316, 474
SinI	GGWCC	2 cut(s)	95, 282
SmiMI	CAYNNNNRTG	1 cut(s)	138
SpeI	ACTAGT	1 cut(s)	628
Sse9I	AATT	8 cut(s)	20, 213, 264, 399, 404, 657, 735, 808
SsiI	CCGC	3 cut(s)	146, 230, 612
SspMI	CTAG	2 cut(s)	119, 629
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	256, 666
TaaI	ACNGT	3 cut(s)	320, 360, 796
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	522, 661
TasI	AATT	8 cut(s)	20, 213, 264, 399, 404, 657, 735, 808
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	713, 728
Tru1I	TTAA	2 cut(s)	375, 738
Tru9I	TTAA	2 cut(s)	375, 738
TscAI	CASTG	2 cut(s)	363, 598
TseFI	GTSAC	2 cut(s)	379, 544
TseI	GCWGC	2 cut(s)	143, 617
Tsp45I	GTSAC	2 cut(s)	379, 544
TspDTI	ATGAA	3 cut(s)	47, 443, 765
TspRI	CASTG	2 cut(s)	363, 598
VpaK11BI	GGWCC	2 cut(s)	95, 282
XapI	RAATTY	3 cut(s)	20, 404, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XmiI	GTMKAC	3 cut(s)	470, 554, 603
XmnI	GAANNNNTTC	2 cut(s)	657, 810
XspI	CTAG	2 cut(s)	119, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.