Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Reverse (-)

36214681 .. 36218136

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G025420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTTATTAATGTCAATCCTGCCTGGTATTACATGCCGGAATTTTATTGATTTAAGCACGGCAGCTCGCAGTAATCCCCCTGACGATGTTTTGGAATGGGTTCAAAAAGATGATCGCCGTTTCCTGCGTGCCAATATCAGAGTGGGTGATATTAATCGAACCATTAAGTTTTACACCGAGTTTTTTGGGATGAAAGTGTTGAGAAGAAAAGATTTCCCAGAAGTAAATATCTCAAATGCAGTCATTGGGTTTGGATCTGAAGAGACTCAATTTGTTCTGGGCCTCAGCCAACACCACAGTGCAGTTGACAAATTGGAGCTCGGAACAGCCTTCAGTCATTTTGGAATTACAACCCAAGATATTTATACAATGGTTGAAAAAATTCGAGCTGCTGGTGGGGTGATCACTCGTGAACCGGGGCCAGTCGCACCTGGTGGGACTACCATCTACGCCTTTGTGAATGATCCCGATGGCTACAGTTTCGAGCTCATCCTCAGGCCGCCATCACCAGAACCACTTAACCATATGTGTCTTAATGTGGTTGATATTGATCGTTCTATTGACTTCTACGAAAAGGCTTTGGGAATGAACTTACTAGTGCCAAAGTACGACAATACTCAAGAGCAGTATACTGTAGCTATGGTGGGCTATGGATCCAACTATACTCAGACGACCGTCATCGAGCTGAAATATAACTATAATGTGACAGAGTATACCAAAGGAAATGGATATGCACAGGTTGCTATTGGCACTGATGATGTATACAAGAGCGCAGCAGCTGTTGAACAAGCTATCCAGGAACTTGGTGGGAAAATAATTCGACCACCAGGTCCACTTCCAATTATCGGGACCAAAATCACTGCATTCCTTGATTCAGATGGCTTTGAAACAGTGTTGGTGGACAATGAAGACTATCTTAATTATCTTAAACAATTCAAGAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

315

Amino Acids

35.2

Weight (kDa)

5.02

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	42 - 163	5.2e-18	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	173 - 296	2.1e-12	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	828
AccI	GTMKAC	3 cut(s)	629, 713, 762
AciI	CCGC	1 cut(s)	500
AclWI	GGATC	4 cut(s)	262, 458, 648, 661
AcsI	RAATTY	2 cut(s)	40, 381
AcuI	CTGAAG	2 cut(s)	279, 316
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	1 cut(s)	845
AgsI	TTSAA	5 cut(s)	104, 377, 785, 887, 937
AhlI	ACTAGT	1 cut(s)	595
AjnI	CCWGG	4 cut(s)	22, 430, 795, 826
AleI	CACNNNNGTG	1 cut(s)	297
AloI	GAACNNNNNNTCC	2 cut(s)	777, 809
AluBI	AGCT	8 cut(s)	65, 319, 389, 487, 638, 685, 779, 791
AluI	AGCT	8 cut(s)	65, 319, 389, 487, 638, 685, 779, 791
Alw21I	GWGCWC	2 cut(s)	321, 489
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	4 cut(s)	262, 458, 648, 661
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	3 cut(s)	280, 419, 497
ApeKI	GCWGC	4 cut(s)	62, 389, 773, 776
ApoI	RAATTY	2 cut(s)	40, 381
AseI	ATTAAT	2 cut(s)	8, 153
Asp700I	GAANNNNTTC	2 cut(s)	99, 381
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	4 cut(s)	280, 419, 830, 849
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	3 cut(s)	158, 412, 498
AvaII	GGWCC	2 cut(s)	830, 849
AxyI	CCTNAGG	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	653
BanII	GRGCYC	2 cut(s)	321, 489
BauI	CACGAG	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	915
Bbv12I	GWGCWC	2 cut(s)	321, 489
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	4 cut(s)	74, 376, 785, 788
BccI	CCATC	4 cut(s)	452, 464, 511, 872
BceAI	ACGGC	2 cut(s)	75, 102
BciT130I	CCWGG	4 cut(s)	24, 432, 797, 828
BclI	TGATCA	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	257
BcuI	ACTAGT	1 cut(s)	595
BfaI	CTAG	1 cut(s)	596
BfmI	CTRYAG	2 cut(s)	475, 633
BisI	GCNGC	5 cut(s)	63, 390, 500, 774, 777
BlsI	GCNGC	5 cut(s)	64, 391, 501, 775, 778
Bme1390I	CCNGG	5 cut(s)	24, 417, 432, 797, 828
Bme18I	GGWCC	2 cut(s)	830, 849
BmgT120I	GGNCC	4 cut(s)	280, 419, 830, 849
BmiI	GGNNCC	3 cut(s)	420, 655, 850
BmrFI	CCNGG	5 cut(s)	24, 417, 432, 797, 828
BoxI	GACNNNNGTC	1 cut(s)	674
BpiI	GAAGAC	1 cut(s)	915
Bpu10I	CCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	417
BsaBI	GATNNNNATC	2 cut(s)	153, 549
BsaJI	CCNNGG	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	845
Bse1I	ACTGG	1 cut(s)	422
Bse21I	CCTNAGG	1 cut(s)	494
Bse8I	GATNNNNATC	2 cut(s)	153, 549
BseBI	CCWGG	4 cut(s)	24, 432, 797, 828
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	2 cut(s)	195, 489
BseJI	GATNNNNATC	2 cut(s)	153, 549
BseLI	CCNNNNNNNGG	1 cut(s)	845
BseMII	CTCAG	3 cut(s)	298, 508, 680
BseNI	ACTGG	1 cut(s)	422
BseXI	GCAGC	4 cut(s)	74, 376, 785, 788
BsgI	GTGCAG	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	675
BshFI	GGCC	3 cut(s)	282, 421, 499
BsiEI	CGRYCG	1 cut(s)	675
BsiHKAI	GWGCWC	2 cut(s)	321, 489
BsiSI	CCGG	2 cut(s)	37, 416
BslFI	GGGAC	2 cut(s)	451, 862
BslI	CCNNNNNNNGG	1 cut(s)	845
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	2 cut(s)	451, 862
BsmI	GAATGC	1 cut(s)	863
BsnI	GGCC	3 cut(s)	282, 421, 499
Bsp1286I	GDGCHC	2 cut(s)	321, 489
Bsp143I	GATC	6 cut(s)	112, 254, 402, 463, 550, 653
BspACI	CCGC	1 cut(s)	500
BspANI	GGCC	3 cut(s)	282, 421, 499
BspCNI	CTCAG	3 cut(s)	297, 507, 679
BspLI	GGNNCC	3 cut(s)	420, 655, 850
BspPI	GGATC	4 cut(s)	262, 458, 648, 661
BsrI	ACTGG	1 cut(s)	422
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	6 cut(s)	112, 254, 402, 463, 550, 653
BssNAI	GTATAC	3 cut(s)	630, 714, 763
BssSI	CACGAG	1 cut(s)	408
Bst1107I	GTATAC	3 cut(s)	630, 714, 763
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	4 cut(s)	24, 432, 797, 828
Bst4CI	ACNGT	5 cut(s)	299, 479, 634, 676, 892
Bst6I	CTCTTC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstC8I	GCNNGC	2 cut(s)	67, 129
BstDEI	CTNAG	3 cut(s)	284, 494, 666
BstF5I	GGATG	2 cut(s)	195, 489
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	6 cut(s)	115, 257, 405, 466, 553, 656
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	6 cut(s)	112, 254, 402, 463, 550, 653
BstMCI	CGRYCG	1 cut(s)	675
BstMWI	GCNNNNNNNGC	1 cut(s)	740
BstNI	CCWGG	4 cut(s)	24, 432, 797, 828
BstNSI	RCATGY	1 cut(s)	36
BstPAI	GACNNNNGTC	1 cut(s)	674
BstSCI	CCNGG	5 cut(s)	22, 415, 430, 795, 826
BstSFI	CTRYAG	2 cut(s)	475, 633
BstV1I	GCAGC	4 cut(s)	74, 376, 785, 788
BstV2I	GAAGAC	1 cut(s)	915
BstX2I	RGATCY	2 cut(s)	254, 653
BstXI	CCANNNNNNTGG	1 cut(s)	803
BstYI	RGATCY	2 cut(s)	254, 653
BstZ17I	GTATAC	3 cut(s)	630, 714, 763
Bsu36I	CCTNAGG	1 cut(s)	494
BsuRI	GGCC	3 cut(s)	282, 421, 499
BtsCI	GGATG	2 cut(s)	195, 489
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	4 cut(s)	304, 750, 858, 897
Cac8I	GCNNGC	2 cut(s)	67, 129
CaiI	CAGNNNCTG	1 cut(s)	779
CfoI	GCGC	1 cut(s)	773
Cfr13I	GGNCC	4 cut(s)	280, 419, 830, 849
CsiI	ACCWGGT	2 cut(s)	430, 826
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	1 cut(s)	33
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	3 cut(s)	284, 494, 666
DpnI	GATC	6 cut(s)	114, 256, 404, 465, 552, 655
DpnII	GATC	6 cut(s)	112, 254, 402, 463, 550, 653
DraIII	CACNNNGTG	1 cut(s)	434
DrdI	GACNNNNNNGTC	1 cut(s)	828
DseDI	GACNNNNNNGTC	1 cut(s)	828
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Ecl136II	GAGCTC	2 cut(s)	319, 487
Eco24I	GRGCYC	2 cut(s)	321, 489
Eco47I	GGWCC	2 cut(s)	830, 849
Eco53kI	GAGCTC	2 cut(s)	319, 487
Eco57I	CTGAAG	2 cut(s)	279, 316
Eco81I	CCTNAGG	1 cut(s)	494
EcoICRI	GAGCTC	2 cut(s)	319, 487
EcoRII	CCWGG	4 cut(s)	22, 430, 795, 826
EcoT38I	GRGCYC	2 cut(s)	321, 489
FaeI	CATG	1 cut(s)	36
FalI	AAGNNNNNCTT	2 cut(s)	900, 932
FaqI	GGGAC	2 cut(s)	451, 862
FatI	CATG	1 cut(s)	32
FauNDI	CATATG	1 cut(s)	525
FbaI	TGATCA	1 cut(s)	402
FblI	GTMKAC	3 cut(s)	629, 713, 762
Fnu4HI	GCNGC	5 cut(s)	63, 390, 500, 774, 777
FokI	GGATG	2 cut(s)	202, 476
FriOI	GRGCYC	2 cut(s)	321, 489
Fsp4HI	GCNGC	5 cut(s)	63, 390, 500, 774, 777
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	5 cut(s)	63, 390, 500, 774, 777
HaeIII	GGCC	3 cut(s)	282, 421, 499
HapII	CCGG	2 cut(s)	37, 416
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	265, 872
HpaII	CCGG	2 cut(s)	37, 416
HphI	GGTGA	3 cut(s)	158, 412, 498
Hpy166II	GTNNAC	7 cut(s)	307, 413, 630, 714, 763, 833, 901
Hpy188I	TCNGA	5 cut(s)	140, 259, 323, 669, 877
Hpy188III	TCNNGA	5 cut(s)	410, 467, 620, 847, 937
Hpy8I	GTNNAC	7 cut(s)	307, 413, 630, 714, 763, 833, 901
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	5 cut(s)	299, 479, 634, 676, 892
HpyCH4V	TGCA	4 cut(s)	239, 302, 734, 863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	740
HpyF3I	CTNAG	3 cut(s)	284, 494, 666
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	1 cut(s)	771
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	6 cut(s)	112, 254, 402, 463, 550, 653
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	4 cut(s)	74, 376, 785, 788
MabI	ACCWGGT	2 cut(s)	430, 826
MaeI	CTAG	1 cut(s)	596
MaeIII	GTNAC	1 cut(s)	703
MalI	GATC	6 cut(s)	114, 256, 404, 465, 552, 655
MboI	GATC	6 cut(s)	112, 254, 402, 463, 550, 653
MboII	GAAGA	3 cut(s)	216, 272, 920
MflI	RGATCY	2 cut(s)	254, 653
MhlI	GDGCHC	2 cut(s)	321, 489
MluCI	AATT	9 cut(s)	40, 269, 311, 345, 381, 816, 840, 919, 932
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	2 cut(s)	293, 503
MroXI	GAANNNNTTC	2 cut(s)	99, 381
MseI	TTAA	8 cut(s)	8, 53, 153, 165, 519, 534, 918, 927
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	779
MspI	CCGG	2 cut(s)	37, 416
MspR9I	CCNGG	5 cut(s)	24, 417, 432, 797, 828
Mva1269I	GAATGC	1 cut(s)	863
MvaI	CCWGG	4 cut(s)	24, 432, 797, 828
MwoI	GCNNNNNNNGC	1 cut(s)	740
NciI	CCSGG	1 cut(s)	417
NdeI	CATATG	1 cut(s)	525
NdeII	GATC	6 cut(s)	112, 254, 402, 463, 550, 653
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	3 cut(s)	420, 655, 850
NmuCI	GTSAC	1 cut(s)	703
NspI	RCATGY	1 cut(s)	36
OliI	CACNNNNGTG	1 cut(s)	297
PctI	GAATGC	1 cut(s)	863
PdmI	GAANNNNTTC	2 cut(s)	99, 381
PfeI	GAWTC	1 cut(s)	872
PfoI	TCCNGGA	1 cut(s)	795
PkrI	GCNGC	5 cut(s)	64, 391, 501, 775, 778
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PshAI	GACNNNNGTC	1 cut(s)	674
PshBI	ATTAAT	2 cut(s)	8, 153
Psp124BI	GAGCTC	2 cut(s)	321, 489
Psp6I	CCWGG	4 cut(s)	22, 430, 795, 826
PspGI	CCWGG	4 cut(s)	22, 430, 795, 826
PspN4I	GGNNCC	3 cut(s)	420, 655, 850
PspPI	GGNCC	4 cut(s)	280, 419, 830, 849
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	2 cut(s)	254, 653
PvuII	CAGCTG	1 cut(s)	779
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	297
SacI	GAGCTC	2 cut(s)	321, 489
SaqAI	TTAA	8 cut(s)	8, 53, 153, 165, 519, 534, 918, 927
SatI	GCNGC	5 cut(s)	63, 390, 500, 774, 777
Sau3AI	GATC	6 cut(s)	112, 254, 402, 463, 550, 653
Sau96I	GGNCC	4 cut(s)	280, 419, 830, 849
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	5 cut(s)	24, 417, 432, 797, 828
SduI	GDGCHC	2 cut(s)	321, 489
SexAI	ACCWGGT	2 cut(s)	430, 826
SfcI	CTRYAG	2 cut(s)	475, 633
SinI	GGWCC	2 cut(s)	830, 849
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	618
SmoI	CTYRAG	1 cut(s)	618
SpeI	ACTAGT	1 cut(s)	595
Sse9I	AATT	9 cut(s)	40, 269, 311, 345, 381, 816, 840, 919, 932
SsiI	CCGC	1 cut(s)	500
SspMI	CTAG	1 cut(s)	596
SstI	GAGCTC	2 cut(s)	321, 489
StyD4I	CCNGG	5 cut(s)	22, 415, 430, 795, 826
TaaI	ACNGT	5 cut(s)	299, 479, 634, 676, 892
TaqI	TCGA	5 cut(s)	157, 385, 483, 681, 820
TasI	AATT	9 cut(s)	40, 269, 311, 345, 381, 816, 840, 919, 932
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	1 cut(s)	872
Tru1I	TTAA	8 cut(s)	8, 53, 153, 165, 519, 534, 918, 927
Tru9I	TTAA	8 cut(s)	8, 53, 153, 165, 519, 534, 918, 927
TscAI	CASTG	4 cut(s)	304, 757, 865, 897
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	4 cut(s)	62, 389, 773, 776
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	3 cut(s)	206, 602, 921
TspRI	CASTG	4 cut(s)	304, 757, 865, 897
VpaK11BI	GGWCC	2 cut(s)	830, 849
VspI	ATTAAT	2 cut(s)	8, 153
XapI	RAATTY	2 cut(s)	40, 381
XceI	RCATGY	1 cut(s)	36
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 803
XmiI	GTMKAC	3 cut(s)	629, 713, 762
XmnI	GAANNNNTTC	2 cut(s)	99, 381
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.