Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Forward (+)

58744282 .. 58746197

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTGAAGAACCAGCAGTTGGTCTACAGCTGTATTCTTTTGTTCATCTGTTTGATTGATTTAAGCAATGCAGCTCGCGGTAATCCCCCTGACGATGTTTTGGAATGGGTTCAAAAAGATGATCGCCGTTTCCTGCGTGCCAATATCAGAGTTGGTGATCTTAATCGAACCATCAAGTTTTACACCGAGTTTTTTGGGATGGAAGTGTTGAGCAGAAAAGATTTTCCAAAAGTAAATATCTCAAATGCAGTGATTGGGTTTGGATCTGAAGAGACTCAATTTGTTCTGGGACTCACCCAACACCACAGCGCAGTTGACAAATTGGAGCTCGGAACAGCCTTCAATCATTTCGGAATTACAACTCAAGATATTTATACAATGGTTGAAAAAATTCGAGCTGCTGGTGGGGTGATCACTCGTGAACCAGGGCCAGTTGCACCCGGCGGGACTACCATCTACGCCTTTGTGAACGATCCCGATGGCTACAGTTTCGAGCTCTTCCTCAGGCCGCCAACTCCAGAACCACTTAATCATATATGTCTTAACGTGGTTGACATTGATCGTTCTATTGACTTCTACCAAAAGCTATGGTGGGGCTATGGATCCAACTATACTCAGACGACCGTCATCGAGCTGCAATATAACTATAATGTGACAGATTATACCAAAGGAAATGGATACGCACAGGTAGCTATTGGCACCGATGATGTATACAAGAGTGCAGCAGTTGTTGAACAGGTTATCCAGGAACTTGGTGGAAAAATTATTCAACCACCAGGTCCAATTCCATTTATCAAGACCACAATCACTGCATTCCTTGATTCATATGGCTTTGAAACGGTAAACCCCTTGTTTTTTATTTCGGTAAAAAACCACCAATTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

295

Amino Acids

33.13

Weight (kDa)

5.15

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	45 - 166	1.9e-17	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	49 - 147	8.9e-06	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	698
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccI	GTMKAC	2 cut(s)	24, 711
AccII	CGCG	1 cut(s)	78
AciI	CCGC	3 cut(s)	78, 444, 509
AclWI	GGATC	4 cut(s)	271, 467, 597, 610
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	6 cut(s)	113, 343, 386, 734, 770, 836
AjnI	CCWGG	3 cut(s)	424, 744, 775
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AloI	GAACNNNNNNTCC	2 cut(s)	726, 758
AluBI	AGCT	8 cut(s)	30, 74, 328, 398, 496, 586, 634, 692
AluI	AGCT	8 cut(s)	30, 74, 328, 398, 496, 586, 634, 692
Alw21I	GWGCWC	2 cut(s)	330, 498
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	4 cut(s)	271, 467, 597, 610
AoxI	GGCC	2 cut(s)	428, 506
ApeKI	GCWGC	4 cut(s)	71, 398, 634, 722
ApoI	RAATTY	1 cut(s)	390
Asp700I	GAANNNNTTC	2 cut(s)	108, 390
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	428, 779
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	4 cut(s)	16, 167, 286, 421
AvaII	GGWCC	1 cut(s)	779
AxyI	CCTNAGG	1 cut(s)	503
BamHI	GGATCC	1 cut(s)	602
BanI	GGYRCC	1 cut(s)	698
BanII	GRGCYC	2 cut(s)	330, 498
BauI	CACGAG	1 cut(s)	417
Bbv12I	GWGCWC	2 cut(s)	330, 498
BbvI	GCAGC	4 cut(s)	83, 385, 621, 734
BccI	CCATC	4 cut(s)	179, 193, 461, 473
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	3 cut(s)	426, 746, 777
BciVI	GTATCC	1 cut(s)	671
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	266
BfmI	CTRYAG	2 cut(s)	25, 484
BfuI	GTATCC	1 cut(s)	671
BisI	GCNGC	5 cut(s)	72, 399, 509, 635, 723
BlsI	GCNGC	5 cut(s)	73, 400, 510, 636, 724
Bme1390I	CCNGG	4 cut(s)	426, 441, 746, 777
Bme18I	GGWCC	1 cut(s)	779
BmgT120I	GGNCC	2 cut(s)	428, 779
BmiI	GGNNCC	2 cut(s)	604, 700
BmrFI	CCNGG	4 cut(s)	426, 441, 746, 777
BoxI	GACNNNNGTC	1 cut(s)	623
BpmI	CTGGAG	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	431
Bse21I	CCTNAGG	1 cut(s)	503
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	3 cut(s)	426, 746, 777
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	204
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	2 cut(s)	517, 629
BseNI	ACTGG	1 cut(s)	431
BseXI	GCAGC	4 cut(s)	83, 385, 621, 734
BsgI	GTGCAG	1 cut(s)	741
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	624
BshFI	GGCC	2 cut(s)	430, 508
BshNI	GGYRCC	1 cut(s)	698
BsiEI	CGRYCG	1 cut(s)	624
BsiHKAI	GWGCWC	2 cut(s)	330, 498
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	303, 460
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	2 cut(s)	303, 460
BsmI	GAATGC	1 cut(s)	812
BsnI	GGCC	2 cut(s)	430, 508
Bsp1286I	GDGCHC	2 cut(s)	330, 498
Bsp143I	GATC	7 cut(s)	121, 157, 263, 411, 472, 559, 602
BspACI	CCGC	3 cut(s)	78, 444, 509
BspANI	GGCC	2 cut(s)	430, 508
BspCNI	CTCAG	2 cut(s)	516, 628
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	884
BspLI	GGNNCC	2 cut(s)	604, 700
BspPI	GGATC	4 cut(s)	271, 467, 597, 610
BspQI	GCTCTTC	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	698
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	7 cut(s)	121, 157, 263, 411, 472, 559, 602
BssNAI	GTATAC	1 cut(s)	712
BssSI	CACGAG	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	712
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	3 cut(s)	426, 746, 777
Bst4CI	ACNGT	3 cut(s)	488, 625, 841
Bst6I	CTCTTC	2 cut(s)	264, 503
BstC8I	GCNNGC	2 cut(s)	76, 138
BstDEI	CTNAG	2 cut(s)	503, 615
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	7 cut(s)	124, 160, 266, 414, 475, 562, 605
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	7 cut(s)	121, 157, 263, 411, 472, 559, 602
BstMCI	CGRYCG	1 cut(s)	624
BstMWI	GCNNNNNNNGC	1 cut(s)	689
BstNI	CCWGG	3 cut(s)	426, 746, 777
BstPAI	GACNNNNGTC	1 cut(s)	623
BstSCI	CCNGG	4 cut(s)	424, 439, 744, 775
BstSFI	CTRYAG	2 cut(s)	25, 484
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	83, 385, 621, 734
BstX2I	RGATCY	2 cut(s)	263, 602
BstXI	CCANNNNNNTGG	1 cut(s)	752
BstYI	RGATCY	2 cut(s)	263, 602
BstZ17I	GTATAC	1 cut(s)	712
Bsu36I	CCTNAGG	1 cut(s)	503
BsuI	GTATCC	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	430, 508
BtsCI	GGATG	1 cut(s)	204
BtsI	GCAGTG	2 cut(s)	255, 807
BtsIMutI	CAGTG	2 cut(s)	255, 807
Cac8I	GCNNGC	2 cut(s)	76, 138
CciI	TCATGA	1 cut(s)	884
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	428, 779
CsiI	ACCWGGT	1 cut(s)	775
CviAII	CATG	1 cut(s)	885
DdeI	CTNAG	2 cut(s)	503, 615
DpnI	GATC	7 cut(s)	123, 159, 265, 413, 474, 561, 604
DpnII	GATC	7 cut(s)	121, 157, 263, 411, 472, 559, 602
Eam1104I	CTCTTC	2 cut(s)	264, 503
EarI	CTCTTC	2 cut(s)	264, 503
Ecl136II	GAGCTC	2 cut(s)	328, 496
Eco24I	GRGCYC	2 cut(s)	330, 498
Eco47I	GGWCC	1 cut(s)	779
Eco53kI	GAGCTC	2 cut(s)	328, 496
Eco57I	CTGAAG	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	503
EcoICRI	GAGCTC	2 cut(s)	328, 496
EcoRII	CCWGG	3 cut(s)	424, 744, 775
EcoT38I	GRGCYC	2 cut(s)	330, 498
FaeI	CATG	1 cut(s)	888
FaqI	GGGAC	2 cut(s)	303, 460
FatI	CATG	1 cut(s)	884
FauI	CCCGC	1 cut(s)	437
FauNDI	CATATG	1 cut(s)	826
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	2 cut(s)	24, 711
Fnu4HI	GCNGC	5 cut(s)	72, 399, 509, 635, 723
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	2 cut(s)	330, 498
Fsp4HI	GCNGC	5 cut(s)	72, 399, 509, 635, 723
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	5 cut(s)	72, 399, 509, 635, 723
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	2 cut(s)	430, 508
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	1 cut(s)	888
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HincII	GTYRAC	2 cut(s)	316, 553
HindII	GTYRAC	2 cut(s)	316, 553
HinfI	GANTC	3 cut(s)	274, 291, 821
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	4 cut(s)	16, 167, 286, 421
Hpy166II	GTNNAC	7 cut(s)	25, 316, 422, 469, 553, 712, 844
Hpy188I	TCNGA	5 cut(s)	149, 268, 332, 353, 618
Hpy188III	TCNNGA	6 cut(s)	365, 419, 476, 518, 796, 885
Hpy8I	GTNNAC	7 cut(s)	25, 316, 422, 469, 553, 712, 844
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	3 cut(s)	488, 625, 841
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	6 cut(s)	71, 248, 437, 637, 722, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	689
HpyF3I	CTNAG	2 cut(s)	503, 615
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	1 cut(s)	888
HspAI	GCGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	7 cut(s)	121, 157, 263, 411, 472, 559, 602
LguI	GCTCTTC	1 cut(s)	503
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	4 cut(s)	83, 385, 621, 734
MabI	ACCWGGT	1 cut(s)	775
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	7 cut(s)	123, 159, 265, 413, 474, 561, 604
MboI	GATC	7 cut(s)	121, 157, 263, 411, 472, 559, 602
MboII	GAAGA	3 cut(s)	19, 281, 490
MfeI	CAATTG	1 cut(s)	878
MflI	RGATCY	2 cut(s)	263, 602
MhlI	GDGCHC	2 cut(s)	330, 498
MluCI	AATT	7 cut(s)	278, 320, 354, 390, 762, 783, 878
MlyI	GAGTC	2 cut(s)	268, 285
MmeI	TCCRAC	1 cut(s)	630
MnlI	CCTC	1 cut(s)	512
MroXI	GAANNNNTTC	2 cut(s)	108, 390
MseI	TTAA	4 cut(s)	62, 162, 528, 543
MspA1I	CMGCKG	1 cut(s)	30
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	4 cut(s)	426, 441, 746, 777
MunI	CAATTG	1 cut(s)	878
Mva1269I	GAATGC	1 cut(s)	812
MvaI	CCWGG	3 cut(s)	426, 746, 777
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	689
NciI	CCSGG	1 cut(s)	441
NdeI	CATATG	1 cut(s)	826
NdeII	GATC	7 cut(s)	121, 157, 263, 411, 472, 559, 602
NlaIII	CATG	1 cut(s)	888
NlaIV	GGNNCC	2 cut(s)	604, 700
NmuCI	GTSAC	1 cut(s)	652
PagI	TCATGA	1 cut(s)	884
PciSI	GCTCTTC	1 cut(s)	503
PctI	GAATGC	1 cut(s)	812
PdmI	GAANNNNTTC	2 cut(s)	108, 390
PfeI	GAWTC	1 cut(s)	821
PflMI	CCANNNNNTGG	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	744
PkrI	GCNGC	5 cut(s)	73, 400, 510, 636, 724
PleI	GAGTC	2 cut(s)	268, 285
PpsI	GAGTC	2 cut(s)	268, 285
PshAI	GACNNNNGTC	1 cut(s)	623
Psp124BI	GAGCTC	2 cut(s)	330, 498
Psp6I	CCWGG	3 cut(s)	424, 744, 775
PspGI	CCWGG	3 cut(s)	424, 744, 775
PspN4I	GGNNCC	2 cut(s)	604, 700
PspPI	GGNCC	2 cut(s)	428, 779
PsuI	RGATCY	2 cut(s)	263, 602
PvuII	CAGCTG	1 cut(s)	30
SacI	GAGCTC	2 cut(s)	330, 498
SapI	GCTCTTC	1 cut(s)	503
SaqAI	TTAA	4 cut(s)	62, 162, 528, 543
SatI	GCNGC	5 cut(s)	72, 399, 509, 635, 723
Sau3AI	GATC	7 cut(s)	121, 157, 263, 411, 472, 559, 602
Sau96I	GGNCC	2 cut(s)	428, 779
SchI	GAGTC	2 cut(s)	268, 285
ScrFI	CCNGG	4 cut(s)	426, 441, 746, 777
SduI	GDGCHC	2 cut(s)	330, 498
SexAI	ACCWGGT	1 cut(s)	775
SfcI	CTRYAG	2 cut(s)	25, 484
SinI	GGWCC	1 cut(s)	779
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	7 cut(s)	278, 320, 354, 390, 762, 783, 878
SsiI	CCGC	3 cut(s)	78, 444, 509
SstI	GAGCTC	2 cut(s)	330, 498
StyD4I	CCNGG	4 cut(s)	424, 439, 744, 775
TaaI	ACNGT	3 cut(s)	488, 625, 841
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	4 cut(s)	166, 394, 492, 630
TasI	AATT	7 cut(s)	278, 320, 354, 390, 762, 783, 878
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	1 cut(s)	821
Tru1I	TTAA	4 cut(s)	62, 162, 528, 543
Tru9I	TTAA	4 cut(s)	62, 162, 528, 543
TscAI	CASTG	2 cut(s)	255, 814
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	4 cut(s)	71, 398, 634, 722
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	2 cut(s)	34, 813
TspRI	CASTG	2 cut(s)	255, 814
Van91I	CCANNNNNTGG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	779
XapI	RAATTY	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XmiI	GTMKAC	2 cut(s)	24, 711
XmnI	GAANNNNTTC	2 cut(s)	108, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.