Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Reverse (-)

35067826 .. 35069774

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAAGATGGTGAAGTACCAGCACTTGGTCTACTGTGTTCTTTTGTTCATCTCTTTGATTGATTTAAGCACGGCAGCTCGCAGTAATCCCCCTGACGATGTTTTGGAATGGGTTCAAAAAGATGATCGCCGTTTCCTGCGTGCCAATATCAGAGTTGGTGATATTAATCGAACCATTAAGTTTTACACCGAGTTTTTTGGGATGAAAGTGTTGAGAAGAAAAGATTTCCCAGAAGTAAATATCTCAAATGCAGTCATTGGGTTTGGATCTGAAGAGACTCAATTTGTTCTGGGCCTCAGCCAACACCACAGTGCAGTTGACAAATTGGAGCTCGGAACAGCCTTCAGTCATTTTGGAATTACAACCCAAGATATTTATACAATGGTGGAAAAAATTCGAGCTGCTGGTGGGGTGATCACTCGTGAACCGGGGCCAGTCGCACCTGGTGGGACTACCATCTACGCCTTTGTGAATGATCCCGATGGCTACAGTTTCGAGCTCATCCTCAGGCCGCCATCACCAGAACCACTTAACCATATGTGTCTTAATGTGGTTGATATTGATCGTTCTATTGACTTCTACGAAAAGTATACTGTAGCTATGGTGGGCTATGGATCCAACTATACTCAGACGACCGTCATCGAGCTGAAATATAACTTTAATGTGACAGAGTATACCAAAGGAAATGGATATGCACAGGTTGCTATTGGCACTGATGATGTATACAAGAGCGCAGCAGCTGTTGAACAAGCTATCCAGGAACTTGGTGGGAAAATAATTCGACCACCAGGTCCACTTCCAATTATCGGGACCAAAATCACTGCATTCCTTGATTCAGATGGCTTTGAAACAGTAAATCCCTTGTCTTTTTCTTTTTGTTTCGGGTTTCTTTCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

299

Amino Acids

33.3

Weight (kDa)

5.31

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	46 - 167	4.6e-18	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	177 - 283	1.3e-06	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	898
AasI	GACNNNNNNGTC	1 cut(s)	789
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccI	GTMKAC	4 cut(s)	30, 590, 674, 723
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	4 cut(s)	274, 470, 609, 622
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	2 cut(s)	291, 328
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	25, 806
AgsI	TTSAA	3 cut(s)	116, 746, 848
AjnI	CCWGG	3 cut(s)	442, 756, 787
AleI	CACNNNNGTG	1 cut(s)	309
AloI	GAACNNNNNNTCC	2 cut(s)	738, 770
AluBI	AGCT	8 cut(s)	77, 331, 401, 499, 599, 646, 740, 752
AluI	AGCT	8 cut(s)	77, 331, 401, 499, 599, 646, 740, 752
Alw21I	GWGCWC	2 cut(s)	333, 501
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	4 cut(s)	274, 470, 609, 622
AlwNI	CAGNNNCTG	1 cut(s)	740
AoxI	GGCC	3 cut(s)	292, 431, 509
ApeKI	GCWGC	4 cut(s)	74, 401, 734, 737
ApoI	RAATTY	1 cut(s)	393
AseI	ATTAAT	1 cut(s)	165
Asp700I	GAANNNNTTC	2 cut(s)	111, 393
AspLEI	GCGC	1 cut(s)	734
AspS9I	GGNCC	4 cut(s)	292, 431, 791, 810
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	4 cut(s)	22, 170, 424, 510
AvaII	GGWCC	2 cut(s)	791, 810
AxyI	CCTNAGG	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	614
BanII	GRGCYC	2 cut(s)	333, 501
BauI	CACGAG	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	333, 501
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	4 cut(s)	86, 388, 746, 749
BccI	CCATC	4 cut(s)	464, 476, 523, 833
BceAI	ACGGC	2 cut(s)	87, 114
BciT130I	CCWGG	3 cut(s)	444, 758, 789
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	269
BfmI	CTRYAG	2 cut(s)	487, 594
BisI	GCNGC	5 cut(s)	75, 402, 512, 735, 738
BlsI	GCNGC	5 cut(s)	76, 403, 513, 736, 739
Bme1390I	CCNGG	4 cut(s)	429, 444, 758, 789
Bme18I	GGWCC	2 cut(s)	791, 810
BmgT120I	GGNCC	4 cut(s)	292, 431, 791, 810
BmiI	GGNNCC	3 cut(s)	432, 616, 811
BmrFI	CCNGG	4 cut(s)	429, 444, 758, 789
BoxI	GACNNNNGTC	1 cut(s)	635
Bpu10I	CCTNAGC	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	429
BsaBI	GATNNNNATC	2 cut(s)	165, 561
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 806
Bse1I	ACTGG	1 cut(s)	434
Bse21I	CCTNAGG	1 cut(s)	506
Bse8I	GATNNNNATC	2 cut(s)	165, 561
BseBI	CCWGG	3 cut(s)	444, 758, 789
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	2 cut(s)	207, 501
BseJI	GATNNNNATC	2 cut(s)	165, 561
BseLI	CCNNNNNNNGG	2 cut(s)	25, 806
BseMII	CTCAG	3 cut(s)	310, 520, 641
BseNI	ACTGG	1 cut(s)	434
BseXI	GCAGC	4 cut(s)	86, 388, 746, 749
BsgI	GTGCAG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	3 cut(s)	294, 433, 511
BsiEI	CGRYCG	1 cut(s)	636
BsiHKAI	GWGCWC	2 cut(s)	333, 501
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	2 cut(s)	463, 823
BslI	CCNNNNNNNGG	2 cut(s)	25, 806
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	463, 823
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	3 cut(s)	294, 433, 511
Bsp1286I	GDGCHC	2 cut(s)	333, 501
Bsp143I	GATC	6 cut(s)	124, 266, 414, 475, 562, 614
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	3 cut(s)	294, 433, 511
BspCNI	CTCAG	3 cut(s)	309, 519, 640
BspLI	GGNNCC	3 cut(s)	432, 616, 811
BspPI	GGATC	4 cut(s)	274, 470, 609, 622
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	6 cut(s)	124, 266, 414, 475, 562, 614
BssNAI	GTATAC	3 cut(s)	591, 675, 724
BssSI	CACGAG	1 cut(s)	420
Bst1107I	GTATAC	3 cut(s)	591, 675, 724
Bst2BI	CACGAG	1 cut(s)	420
Bst2UI	CCWGG	3 cut(s)	444, 758, 789
Bst4CI	ACNGT	6 cut(s)	35, 311, 491, 595, 637, 853
Bst6I	CTCTTC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	79, 141
BstDEI	CTNAG	3 cut(s)	296, 506, 627
BstF5I	GGATG	2 cut(s)	207, 501
BstHHI	GCGC	1 cut(s)	734
BstKTI	GATC	6 cut(s)	127, 269, 417, 478, 565, 617
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	6 cut(s)	124, 266, 414, 475, 562, 614
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNI	CCWGG	3 cut(s)	444, 758, 789
BstPAI	GACNNNNGTC	1 cut(s)	635
BstSCI	CCNGG	4 cut(s)	427, 442, 756, 787
BstSFI	CTRYAG	2 cut(s)	487, 594
BstV1I	GCAGC	4 cut(s)	86, 388, 746, 749
BstX2I	RGATCY	2 cut(s)	266, 614
BstXI	CCANNNNNNTGG	1 cut(s)	764
BstYI	RGATCY	2 cut(s)	266, 614
BstZ17I	GTATAC	3 cut(s)	591, 675, 724
Bsu36I	CCTNAGG	1 cut(s)	506
BsuRI	GGCC	3 cut(s)	294, 433, 511
BtsCI	GGATG	2 cut(s)	207, 501
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	3 cut(s)	316, 711, 819
Cac8I	GCNNGC	2 cut(s)	79, 141
CaiI	CAGNNNCTG	1 cut(s)	740
CfoI	GCGC	1 cut(s)	734
Cfr13I	GGNCC	4 cut(s)	292, 431, 791, 810
CsiI	ACCWGGT	2 cut(s)	442, 787
Csp6I	GTAC	1 cut(s)	16
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	3 cut(s)	296, 506, 627
DpnI	GATC	6 cut(s)	126, 268, 416, 477, 564, 616
DpnII	GATC	6 cut(s)	124, 266, 414, 475, 562, 614
DraIII	CACNNNGTG	1 cut(s)	446
DrdI	GACNNNNNNGTC	1 cut(s)	789
DseDI	GACNNNNNNGTC	1 cut(s)	789
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	2 cut(s)	331, 499
Eco24I	GRGCYC	2 cut(s)	333, 501
Eco47I	GGWCC	2 cut(s)	791, 810
Eco53kI	GAGCTC	2 cut(s)	331, 499
Eco57I	CTGAAG	2 cut(s)	291, 328
Eco81I	CCTNAGG	1 cut(s)	506
EcoICRI	GAGCTC	2 cut(s)	331, 499
EcoRII	CCWGG	3 cut(s)	442, 756, 787
EcoT38I	GRGCYC	2 cut(s)	333, 501
FaqI	GGGAC	2 cut(s)	463, 823
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	4 cut(s)	30, 590, 674, 723
Fnu4HI	GCNGC	5 cut(s)	75, 402, 512, 735, 738
FokI	GGATG	2 cut(s)	214, 488
FriOI	GRGCYC	2 cut(s)	333, 501
Fsp4HI	GCNGC	5 cut(s)	75, 402, 512, 735, 738
GlaI	GCGC	1 cut(s)	733
GluI	GCNGC	5 cut(s)	75, 402, 512, 735, 738
HaeIII	GGCC	3 cut(s)	294, 433, 511
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	1 cut(s)	734
Hin6I	GCGC	1 cut(s)	732
HinP1I	GCGC	1 cut(s)	732
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	277, 833
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	4 cut(s)	22, 170, 424, 510
Hpy166II	GTNNAC	7 cut(s)	31, 319, 425, 591, 675, 724, 794
Hpy188I	TCNGA	5 cut(s)	152, 271, 335, 630, 838
Hpy188III	TCNNGA	3 cut(s)	422, 479, 808
Hpy8I	GTNNAC	7 cut(s)	31, 319, 425, 591, 675, 724, 794
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	6 cut(s)	35, 311, 491, 595, 637, 853
HpyCH4V	TGCA	4 cut(s)	251, 314, 695, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	3 cut(s)	296, 506, 627
HspAI	GCGC	1 cut(s)	732
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	6 cut(s)	124, 266, 414, 475, 562, 614
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	4 cut(s)	86, 388, 746, 749
MabI	ACCWGGT	2 cut(s)	442, 787
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	6 cut(s)	126, 268, 416, 477, 564, 616
MboI	GATC	6 cut(s)	124, 266, 414, 475, 562, 614
MboII	GAAGA	3 cut(s)	16, 228, 284
MflI	RGATCY	2 cut(s)	266, 614
MhlI	GDGCHC	2 cut(s)	333, 501
MluCI	AATT	6 cut(s)	281, 323, 357, 393, 777, 801
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	2 cut(s)	305, 515
MroXI	GAANNNNTTC	2 cut(s)	111, 393
MseI	TTAA	6 cut(s)	65, 165, 177, 531, 546, 660
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	4 cut(s)	429, 444, 758, 789
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	3 cut(s)	444, 758, 789
MwoI	GCNNNNNNNGC	1 cut(s)	701
NciI	CCSGG	1 cut(s)	429
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	6 cut(s)	124, 266, 414, 475, 562, 614
NlaIV	GGNNCC	3 cut(s)	432, 616, 811
NmuCI	GTSAC	1 cut(s)	664
OliI	CACNNNNGTG	1 cut(s)	309
PctI	GAATGC	1 cut(s)	824
PdmI	GAANNNNTTC	2 cut(s)	111, 393
PfeI	GAWTC	1 cut(s)	833
PflMI	CCANNNNNTGG	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	756
PkrI	GCNGC	5 cut(s)	76, 403, 513, 736, 739
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	635
PshBI	ATTAAT	1 cut(s)	165
PsiI	TTATAA	1 cut(s)	898
Psp124BI	GAGCTC	2 cut(s)	333, 501
Psp6I	CCWGG	3 cut(s)	442, 756, 787
PspGI	CCWGG	3 cut(s)	442, 756, 787
PspN4I	GGNNCC	3 cut(s)	432, 616, 811
PspPI	GGNCC	4 cut(s)	292, 431, 791, 810
PstNI	CAGNNNCTG	1 cut(s)	740
PsuI	RGATCY	2 cut(s)	266, 614
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	2 cut(s)	333, 501
SaqAI	TTAA	6 cut(s)	65, 165, 177, 531, 546, 660
SatI	GCNGC	5 cut(s)	75, 402, 512, 735, 738
Sau3AI	GATC	6 cut(s)	124, 266, 414, 475, 562, 614
Sau96I	GGNCC	4 cut(s)	292, 431, 791, 810
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	4 cut(s)	429, 444, 758, 789
SduI	GDGCHC	2 cut(s)	333, 501
SexAI	ACCWGGT	2 cut(s)	442, 787
SfcI	CTRYAG	2 cut(s)	487, 594
SinI	GGWCC	2 cut(s)	791, 810
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	6 cut(s)	281, 323, 357, 393, 777, 801
SsiI	CCGC	1 cut(s)	512
SstI	GAGCTC	2 cut(s)	333, 501
StyD4I	CCNGG	4 cut(s)	427, 442, 756, 787
TaaI	ACNGT	6 cut(s)	35, 311, 491, 595, 637, 853
TaqI	TCGA	5 cut(s)	169, 397, 495, 642, 781
TasI	AATT	6 cut(s)	281, 323, 357, 393, 777, 801
TauI	GCSGC	1 cut(s)	514
TfiI	GAWTC	1 cut(s)	833
Tru1I	TTAA	6 cut(s)	65, 165, 177, 531, 546, 660
Tru9I	TTAA	6 cut(s)	65, 165, 177, 531, 546, 660
TscAI	CASTG	3 cut(s)	316, 718, 826
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	4 cut(s)	74, 401, 734, 737
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	4 cut(s)	17, 37, 218, 882
TspRI	CASTG	3 cut(s)	316, 718, 826
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	791, 810
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	1 cut(s)	393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XmiI	GTMKAC	4 cut(s)	30, 590, 674, 723
XmnI	GAANNNNTTC	2 cut(s)	111, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.