Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Reverse (-)

13511705 .. 13516177

Gene Structure 4473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G216000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCGTGTCAATATCAAAGTTGATGATCTTGATTACACCATTAAGTTTTACACAGAATTTTTGGGGATGAAAGTGTTGAGTAGAAAACATTTCCCGGAAGAAAAATACTCAAATGCAGTTATTGGGTTTGGACCTCAAGAGACTCATTTTGTGATAGGCCTCACATCCCACCACAATGAAGCGGACAAGTTAGAGGTTGGAACAACCTTCAATCATTTTGGAATCGCAACCCAAGATATTTATAATATAGTTGAAAAAATTCGAGCCAAGGGAGGAGTGATCACTCGCGAACCAGGGCCAATCGCAACTGGCGGGACTAGCATATTCGCCTTCGTGAAGGATCCCAACGGCTACACTTTCGAGCTCCTCCGGAGGCCACCAACTCCAGAACCACTTTGCCAAATATGCCTTAATGTGTTTGATATGGATCGCTCTATTGAGTTCTACAGTAAGTCCTTGGGCATGAACCTACTACTACCAAAGTTTAACGCTACTGAAGAGCAGTATACTCTAGCTATGTTGGGTTATGGATCCAATTTTACTGAGACAACTATTATCGAGTTGAAATACAATTATAACGTGACCCGGTATACCAGAGGAAACGGATATGCACAGGTTGCTATTGGCACTAATGACGTGTACAAGAGCGCAGCAGCTTTTGAACTGGTTACCAAGGAATTTGGAGGGAAAATAATTCGTCCACCGGGTCCAATCCCAAAAATCAAAACCAAAATCACTGCATTCCTTGACACAGATGGCTTTCAAACGGTGTTGGTGGACAATCAAGACTATCTTAAAGAATTGAAGAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

272

Amino Acids

30.57

Weight (kDa)

6.97

Isoelectric Point (pI)

25.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	243, 576
AccI	GTMKAC	2 cut(s)	506, 590
AccII	CGCG	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	369
AciI	CCGC	2 cut(s)	182, 312
AclWI	GGATC	5 cut(s)	335, 348, 435, 525, 538
AcsI	RAATTY	3 cut(s)	56, 258, 677
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	1 cut(s)	641
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	6 cut(s)	211, 254, 565, 662, 764, 805
AjiI	CACGTC	1 cut(s)	637
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	3 cut(s)	364, 515, 656
AluI	AGCT	3 cut(s)	364, 515, 656
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	2 cut(s)	134, 539
AlwI	GGATC	5 cut(s)	335, 348, 435, 525, 538
Aor13HI	TCCGGA	1 cut(s)	369
AoxI	GGCC	3 cut(s)	157, 296, 374
ApeKI	GCWGC	2 cut(s)	650, 653
ApoI	RAATTY	3 cut(s)	56, 258, 677
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	3 cut(s)	131, 296, 707
AsuC2I	CCSGG	3 cut(s)	95, 586, 705
AvaII	GGWCC	2 cut(s)	131, 707
BamHI	GGATCC	2 cut(s)	340, 530
BanII	GRGCYC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	662, 665
BccI	CCATC	1 cut(s)	749
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	3 cut(s)	95, 586, 705
BcoDI	GTCTC	2 cut(s)	134, 539
BfaI	CTAG	2 cut(s)	318, 512
BfmI	CTRYAG	1 cut(s)	445
BisI	GCNGC	2 cut(s)	651, 654
BlsI	GCNGC	2 cut(s)	652, 655
Bme1390I	CCNGG	4 cut(s)	95, 294, 586, 705
Bme18I	GGWCC	2 cut(s)	131, 707
BmgBI	CACGTC	1 cut(s)	637
BmgT120I	GGNCC	3 cut(s)	131, 296, 707
BmiI	GGNNCC	3 cut(s)	342, 532, 708
BmrFI	CCNGG	4 cut(s)	95, 294, 586, 705
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	120
BpuMI	CCSGG	3 cut(s)	95, 586, 705
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	4 cut(s)	267, 293, 456, 672
BsaWI	WCCGGW	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	313, 669
Bse8I	GATNNNNATC	1 cut(s)	426
BseAI	TCCGGA	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	4 cut(s)	267, 293, 456, 672
BseGI	GGATG	2 cut(s)	72, 164
BseJI	GATNNNNATC	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	2 cut(s)	313, 669
BseRI	GAGGAG	2 cut(s)	288, 356
BseXI	GCAGC	2 cut(s)	662, 665
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	159, 298, 376
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	4 cut(s)	95, 370, 586, 704
BslFI	GGGAC	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	134, 539
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	3 cut(s)	159, 298, 376
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp13I	TCCGGA	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	5 cut(s)	25, 279, 340, 427, 530
Bsp68I	TCGCGA	1 cut(s)	288
BspACI	CCGC	2 cut(s)	182, 312
BspANI	GGCC	3 cut(s)	159, 298, 376
BspCNI	CTCAG	1 cut(s)	535
BspEI	TCCGGA	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	3 cut(s)	342, 532, 708
BspPI	GGATC	5 cut(s)	335, 348, 435, 525, 538
BspQI	GCTCTTC	1 cut(s)	492
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	313, 669
BssECI	CCNNGG	4 cut(s)	267, 293, 456, 672
BssMI	GATC	5 cut(s)	25, 279, 340, 427, 530
BssNAI	GTATAC	2 cut(s)	507, 591
BssT1I	CCWWGG	3 cut(s)	267, 456, 672
Bst1107I	GTATAC	2 cut(s)	507, 591
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	449, 769, 813
Bst6I	CTCTTC	1 cut(s)	492
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstAUI	TGTACA	1 cut(s)	639
BstDEI	CTNAG	1 cut(s)	543
BstEII	GGTNACC	1 cut(s)	667
BstF5I	GGATG	2 cut(s)	72, 164
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	5 cut(s)	28, 282, 343, 430, 533
BstMAI	GTCTC	2 cut(s)	134, 539
BstMBI	GATC	5 cut(s)	25, 279, 340, 427, 530
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 405, 617
BstNI	CCWGG	1 cut(s)	294
BstPI	GGTNACC	1 cut(s)	667
BstSCI	CCNGG	4 cut(s)	93, 292, 584, 703
BstSFI	CTRYAG	1 cut(s)	445
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	662, 665
BstX2I	RGATCY	2 cut(s)	340, 530
BstYI	RGATCY	2 cut(s)	340, 530
BstZ17I	GTATAC	2 cut(s)	507, 591
BsuRI	GGCC	3 cut(s)	159, 298, 376
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	72, 164
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	1 cut(s)	735
BtuMI	TCGCGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	3 cut(s)	131, 296, 707
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	9 cut(s)	159, 266, 298, 351, 364, 376, 515, 656, 759
CviKI_1	RGCY	9 cut(s)	159, 266, 298, 351, 364, 376, 515, 656, 759
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	5 cut(s)	27, 281, 342, 429, 532
DpnII	GATC	5 cut(s)	25, 279, 340, 427, 530
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	364
Eco130I	CCWWGG	3 cut(s)	267, 456, 672
Eco147I	AGGCCT	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	2 cut(s)	131, 707
Eco53kI	GAGCTC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	516
Eco91I	GGTNACC	1 cut(s)	667
EcoICRI	GAGCTC	1 cut(s)	364
EcoO65I	GGTNACC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	3 cut(s)	267, 456, 672
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	3 cut(s)	267, 456, 672
FaeI	CATG	1 cut(s)	466
FalI	AAGNNNNNCTT	2 cut(s)	777, 809
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	1 cut(s)	462
FauI	CCCGC	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	2 cut(s)	506, 590
Fnu4HI	GCNGC	2 cut(s)	651, 654
FokI	GGATG	2 cut(s)	79, 151
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	651, 654
FspBI	CTAG	2 cut(s)	318, 512
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	2 cut(s)	651, 654
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	3 cut(s)	159, 298, 376
HapII	CCGG	4 cut(s)	95, 370, 586, 704
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	1 cut(s)	466
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	2 cut(s)	142, 222
HpaII	CCGG	4 cut(s)	95, 370, 586, 704
Hpy166II	GTNNAC	5 cut(s)	507, 591, 640, 701, 778
Hpy188III	TCNNGA	7 cut(s)	29, 137, 287, 334, 370, 386, 785
Hpy8I	GTNNAC	5 cut(s)	507, 591, 640, 701, 778
HpyAV	CCTTC	3 cut(s)	217, 331, 340
HpyCH4III	ACNGT	3 cut(s)	449, 769, 813
HpyCH4IV	ACGT	2 cut(s)	579, 636
HpyCH4V	TGCA	3 cut(s)	116, 611, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 405, 617
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	2 cut(s)	579, 636
Hsp92II	CATG	1 cut(s)	466
HspAI	GCGC	1 cut(s)	648
Kpn2I	TCCGGA	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	25, 279, 340, 427, 530
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	369
Lsp1109I	GCAGC	2 cut(s)	662, 665
MaeI	CTAG	2 cut(s)	318, 512
MaeII	ACGT	2 cut(s)	579, 636
MaeIII	GTNAC	2 cut(s)	580, 667
MalI	GATC	5 cut(s)	27, 281, 342, 429, 532
MboI	GATC	5 cut(s)	25, 279, 340, 427, 530
MboII	GAAGA	2 cut(s)	110, 509
MflI	RGATCY	2 cut(s)	340, 530
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	7 cut(s)	56, 258, 535, 571, 677, 693, 800
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	8 cut(s)	144, 170, 187, 266, 366, 377, 590, 677
MroI	TCCGGA	1 cut(s)	369
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	4 cut(s)	42, 411, 486, 795
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	4 cut(s)	95, 370, 586, 704
MspR9I	CCNGG	4 cut(s)	95, 294, 586, 705
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	318, 405, 617
NciI	CCSGG	3 cut(s)	95, 586, 705
NdeII	GATC	5 cut(s)	25, 279, 340, 427, 530
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	3 cut(s)	342, 532, 708
NmuCI	GTSAC	1 cut(s)	580
NruI	TCGCGA	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	492
PctI	GAATGC	1 cut(s)	740
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	222
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	652, 655
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PsiI	TTATAA	2 cut(s)	243, 576
Psp124BI	GAGCTC	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	292
PspEI	GGTNACC	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	3 cut(s)	342, 532, 708
PspPI	GGNCC	3 cut(s)	131, 296, 707
PsuI	RGATCY	2 cut(s)	340, 530
RruI	TCGCGA	1 cut(s)	288
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	4 cut(s)	42, 411, 486, 795
SatI	GCNGC	2 cut(s)	651, 654
Sau3AI	GATC	5 cut(s)	25, 279, 340, 427, 530
Sau96I	GGNCC	3 cut(s)	131, 296, 707
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	4 cut(s)	95, 294, 586, 705
SduI	GDGCHC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	445
SinI	GGWCC	2 cut(s)	131, 707
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	7 cut(s)	56, 258, 535, 571, 677, 693, 800
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	2 cut(s)	182, 312
SspMI	CTAG	2 cut(s)	318, 512
SstI	GAGCTC	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	159
StyD4I	CCNGG	4 cut(s)	93, 292, 584, 703
StyI	CCWWGG	3 cut(s)	267, 456, 672
TaaI	ACNGT	3 cut(s)	449, 769, 813
TaiI	ACGT	2 cut(s)	582, 639
TaqI	TCGA	3 cut(s)	262, 360, 558
TasI	AATT	7 cut(s)	56, 258, 535, 571, 677, 693, 800
TatI	WGTACW	1 cut(s)	639
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	4 cut(s)	42, 411, 486, 795
Tru9I	TTAA	4 cut(s)	42, 411, 486, 795
TscAI	CASTG	1 cut(s)	742
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	2 cut(s)	650, 653
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	3 cut(s)	83, 192, 479
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	1 cut(s)	742
VpaK11BI	GGWCC	2 cut(s)	131, 707
XapI	RAATTY	3 cut(s)	56, 258, 677
XmiI	GTMKAC	2 cut(s)	506, 590
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	2 cut(s)	318, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.