Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Reverse (-)

36081657 .. 36083952

Gene Structure 2296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG271900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAAGATGGTGAAGTACCAATACTTGGTCTACTGTGTTCTTTTGTTCATCTCTTTGATTGATTTAAGCACGGCAGCTCGCAGTAATCCCCCTGACGATGTTTTGGAATGGGTTCAAAAAGATGATCGCCGTTTCCTGCGTGCCAATATCAGAGTTGGTGATATTAATCGAACCATTAAGTTTTACACCGAGTTTTTTGGGATGAAAGTGTTGAGAAGAAAAGATTTCCCAAAAGTAAATATCTCAAATGCAGTCATTGGGTTTGGATCTGAAGAGACTCAATTTGTTCTGGGCCTCAGCCAACACCACAGTGCAGTTGATCACAAATTGGAGCTCGGAACAGCCTTCAGTCATTTTGGAATTACAACCCAAGATATTTATACAATGGTTGAAAAAATTCGAGCTGCTGGCGGGGTGATCACTCGTGAACCGGGGCCAGTCGCACCTGGTGGGACTACCATCTACGCCTTTGTGAATGATCCCGATGGCTACAGTTTCGAGCTCATCCTCAGGCCGCCATCACCAGAACCACTTAACCATATGTGTCTTAATGTGGTTGATATTGATCGTTCTATTGACTTCTACGAAAAGGCTTTGGGAATGAACTTACTAGTGCCAAAGTACGACAATACTCAAGAGCAGTATACTGTAGCTATGGTGGGCTATGGATCCAACTATACTCAGACGACCGTCATCGAGCTGAAATATAACTTTAATGTGACAGAGTATACCAAAGGAAATGGATATGCACAGGTTGCTATTGGCACTGATGATGTATACAAGAGCGCAGCAGCTGTTGAACAAGCTATCCAGGAACTTGGTGGGAAAATAATTCGACCACCAGGTCCACTTCCAATTATCGGGACCAAAATCACTGCATTCCTTGATTCAGATGGCTTTGAAACAGTGTTGGTGAACAATGAAGACTATCTTAATTATCTTAAACAATTCAAGAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

320

Amino Acids

35.96

Weight (kDa)

5.5

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	46 - 168	3e-18	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	178 - 301	9.2e-12	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	843
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccI	GTMKAC	4 cut(s)	30, 644, 728, 777
AciI	CCGC	2 cut(s)	411, 515
AclWI	GGATC	4 cut(s)	274, 473, 663, 676
AcsI	RAATTY	1 cut(s)	396
AcuI	CTGAAG	2 cut(s)	291, 331
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	2 cut(s)	17, 623
AfiI	CCNNNNNNNGG	2 cut(s)	25, 860
AgsI	TTSAA	5 cut(s)	116, 392, 800, 902, 952
AhlI	ACTAGT	1 cut(s)	610
AjnI	CCWGG	3 cut(s)	445, 810, 841
AleI	CACNNNNGTG	1 cut(s)	309
AloI	GAACNNNNNNTCC	2 cut(s)	792, 824
AluBI	AGCT	8 cut(s)	77, 334, 404, 502, 653, 700, 794, 806
AluI	AGCT	8 cut(s)	77, 334, 404, 502, 653, 700, 794, 806
Alw21I	GWGCWC	2 cut(s)	336, 504
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	4 cut(s)	274, 473, 663, 676
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	3 cut(s)	292, 434, 512
ApeKI	GCWGC	4 cut(s)	74, 404, 788, 791
ApoI	RAATTY	1 cut(s)	396
AseI	ATTAAT	1 cut(s)	165
Asp700I	GAANNNNTTC	2 cut(s)	111, 396
AspLEI	GCGC	1 cut(s)	788
AspS9I	GGNCC	4 cut(s)	292, 434, 845, 864
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	5 cut(s)	22, 170, 427, 513, 925
AvaII	GGWCC	2 cut(s)	845, 864
AxyI	CCTNAGG	1 cut(s)	509
BamHI	GGATCC	1 cut(s)	668
BanII	GRGCYC	2 cut(s)	336, 504
BarI	GAAGNNNNNNTAC	1 cut(s)	37
BauI	CACGAG	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	930
Bbv12I	GWGCWC	2 cut(s)	336, 504
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	4 cut(s)	86, 391, 800, 803
BccI	CCATC	4 cut(s)	467, 479, 526, 887
BceAI	ACGGC	2 cut(s)	87, 114
BciT130I	CCWGG	3 cut(s)	447, 812, 843
BclI	TGATCA	2 cut(s)	319, 417
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	269
BcuI	ACTAGT	1 cut(s)	610
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	2 cut(s)	490, 648
BisI	GCNGC	5 cut(s)	75, 405, 515, 789, 792
BlsI	GCNGC	5 cut(s)	76, 406, 516, 790, 793
Bme1390I	CCNGG	4 cut(s)	432, 447, 812, 843
Bme18I	GGWCC	2 cut(s)	845, 864
BmgT120I	GGNCC	4 cut(s)	292, 434, 845, 864
BmiI	GGNNCC	3 cut(s)	435, 670, 865
BmrFI	CCNGG	4 cut(s)	432, 447, 812, 843
BoxI	GACNNNNGTC	1 cut(s)	689
BpiI	GAAGAC	1 cut(s)	930
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	618
BpuMI	CCSGG	1 cut(s)	432
BsaBI	GATNNNNATC	2 cut(s)	165, 564
BsaJI	CCNNGG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 860
Bse1I	ACTGG	1 cut(s)	437
Bse21I	CCTNAGG	1 cut(s)	509
Bse8I	GATNNNNATC	2 cut(s)	165, 564
BseBI	CCWGG	3 cut(s)	447, 812, 843
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	2 cut(s)	207, 504
BseJI	GATNNNNATC	2 cut(s)	165, 564
BseLI	CCNNNNNNNGG	2 cut(s)	25, 860
BseMII	CTCAG	3 cut(s)	310, 523, 695
BseNI	ACTGG	1 cut(s)	437
BseXI	GCAGC	4 cut(s)	86, 391, 800, 803
BsgI	GTGCAG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	690
BshFI	GGCC	3 cut(s)	294, 436, 514
BsiEI	CGRYCG	1 cut(s)	690
BsiHKAI	GWGCWC	2 cut(s)	336, 504
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	2 cut(s)	466, 877
BslI	CCNNNNNNNGG	2 cut(s)	25, 860
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	466, 877
BsmI	GAATGC	1 cut(s)	878
BsnI	GGCC	3 cut(s)	294, 436, 514
Bsp1286I	GDGCHC	2 cut(s)	336, 504
Bsp143I	GATC	7 cut(s)	124, 266, 319, 417, 478, 565, 668
BspACI	CCGC	2 cut(s)	411, 515
BspANI	GGCC	3 cut(s)	294, 436, 514
BspCNI	CTCAG	3 cut(s)	309, 522, 694
BspLI	GGNNCC	3 cut(s)	435, 670, 865
BspPI	GGATC	4 cut(s)	274, 473, 663, 676
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	7 cut(s)	124, 266, 319, 417, 478, 565, 668
BssNAI	GTATAC	3 cut(s)	645, 729, 778
BssSI	CACGAG	1 cut(s)	423
Bst1107I	GTATAC	3 cut(s)	645, 729, 778
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	3 cut(s)	447, 812, 843
Bst4CI	ACNGT	6 cut(s)	35, 311, 494, 649, 691, 907
Bst6I	CTCTTC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	3 cut(s)	79, 141, 409
BstDEI	CTNAG	3 cut(s)	296, 509, 681
BstF5I	GGATG	2 cut(s)	207, 504
BstHHI	GCGC	1 cut(s)	788
BstKTI	GATC	7 cut(s)	127, 269, 322, 420, 481, 568, 671
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	7 cut(s)	124, 266, 319, 417, 478, 565, 668
BstMCI	CGRYCG	1 cut(s)	690
BstMWI	GCNNNNNNNGC	1 cut(s)	755
BstNI	CCWGG	3 cut(s)	447, 812, 843
BstPAI	GACNNNNGTC	1 cut(s)	689
BstSCI	CCNGG	4 cut(s)	430, 445, 810, 841
BstSFI	CTRYAG	2 cut(s)	490, 648
BstV1I	GCAGC	4 cut(s)	86, 391, 800, 803
BstV2I	GAAGAC	1 cut(s)	930
BstX2I	RGATCY	2 cut(s)	266, 668
BstXI	CCANNNNNNTGG	1 cut(s)	818
BstYI	RGATCY	2 cut(s)	266, 668
BstZ17I	GTATAC	3 cut(s)	645, 729, 778
Bsu36I	CCTNAGG	1 cut(s)	509
BsuRI	GGCC	3 cut(s)	294, 436, 514
BtsCI	GGATG	2 cut(s)	207, 504
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	4 cut(s)	316, 765, 873, 912
Cac8I	GCNNGC	3 cut(s)	79, 141, 409
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	1 cut(s)	788
Cfr13I	GGNCC	4 cut(s)	292, 434, 845, 864
CsiI	ACCWGGT	2 cut(s)	445, 841
Csp6I	GTAC	2 cut(s)	16, 622
CviQI	GTAC	2 cut(s)	16, 622
DdeI	CTNAG	3 cut(s)	296, 509, 681
DpnI	GATC	7 cut(s)	126, 268, 321, 419, 480, 567, 670
DpnII	GATC	7 cut(s)	124, 266, 319, 417, 478, 565, 668
DraIII	CACNNNGTG	1 cut(s)	449
DrdI	GACNNNNNNGTC	1 cut(s)	843
DseDI	GACNNNNNNGTC	1 cut(s)	843
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	2 cut(s)	334, 502
Eco24I	GRGCYC	2 cut(s)	336, 504
Eco47I	GGWCC	2 cut(s)	845, 864
Eco53kI	GAGCTC	2 cut(s)	334, 502
Eco57I	CTGAAG	2 cut(s)	291, 331
Eco81I	CCTNAGG	1 cut(s)	509
EcoICRI	GAGCTC	2 cut(s)	334, 502
EcoRII	CCWGG	3 cut(s)	445, 810, 841
EcoT38I	GRGCYC	2 cut(s)	336, 504
FalI	AAGNNNNNCTT	2 cut(s)	915, 947
FaqI	GGGAC	2 cut(s)	466, 877
FauI	CCCGC	1 cut(s)	404
FauNDI	CATATG	1 cut(s)	540
FbaI	TGATCA	2 cut(s)	319, 417
FblI	GTMKAC	4 cut(s)	30, 644, 728, 777
Fnu4HI	GCNGC	5 cut(s)	75, 405, 515, 789, 792
FokI	GGATG	2 cut(s)	214, 491
FriOI	GRGCYC	2 cut(s)	336, 504
Fsp4HI	GCNGC	5 cut(s)	75, 405, 515, 789, 792
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	1 cut(s)	787
GluI	GCNGC	5 cut(s)	75, 405, 515, 789, 792
HaeIII	GGCC	3 cut(s)	294, 436, 514
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	1 cut(s)	788
Hin6I	GCGC	1 cut(s)	786
HinP1I	GCGC	1 cut(s)	786
HinfI	GANTC	2 cut(s)	277, 887
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	5 cut(s)	22, 170, 427, 513, 925
Hpy166II	GTNNAC	7 cut(s)	31, 428, 645, 729, 778, 848, 916
Hpy188I	TCNGA	5 cut(s)	152, 271, 338, 684, 892
Hpy188III	TCNNGA	5 cut(s)	425, 482, 635, 862, 952
Hpy8I	GTNNAC	7 cut(s)	31, 428, 645, 729, 778, 848, 916
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	6 cut(s)	35, 311, 494, 649, 691, 907
HpyCH4V	TGCA	4 cut(s)	251, 314, 749, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	755
HpyF3I	CTNAG	3 cut(s)	296, 509, 681
HspAI	GCGC	1 cut(s)	786
Ksp22I	TGATCA	2 cut(s)	319, 417
Kzo9I	GATC	7 cut(s)	124, 266, 319, 417, 478, 565, 668
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	4 cut(s)	86, 391, 800, 803
MabI	ACCWGGT	2 cut(s)	445, 841
MaeI	CTAG	1 cut(s)	611
MaeIII	GTNAC	1 cut(s)	718
MalI	GATC	7 cut(s)	126, 268, 321, 419, 480, 567, 670
MboI	GATC	7 cut(s)	124, 266, 319, 417, 478, 565, 668
MboII	GAAGA	4 cut(s)	16, 228, 284, 935
MflI	RGATCY	2 cut(s)	266, 668
MhlI	GDGCHC	2 cut(s)	336, 504
MluCI	AATT	8 cut(s)	281, 326, 360, 396, 831, 855, 934, 947
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	696
MnlI	CCTC	2 cut(s)	305, 518
MroXI	GAANNNNTTC	2 cut(s)	111, 396
MseI	TTAA	8 cut(s)	65, 165, 177, 534, 549, 714, 933, 942
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	4 cut(s)	432, 447, 812, 843
Mva1269I	GAATGC	1 cut(s)	878
MvaI	CCWGG	3 cut(s)	447, 812, 843
MwoI	GCNNNNNNNGC	1 cut(s)	755
NciI	CCSGG	1 cut(s)	432
NdeI	CATATG	1 cut(s)	540
NdeII	GATC	7 cut(s)	124, 266, 319, 417, 478, 565, 668
NlaIV	GGNNCC	3 cut(s)	435, 670, 865
NmuCI	GTSAC	1 cut(s)	718
OliI	CACNNNNGTG	1 cut(s)	309
PctI	GAATGC	1 cut(s)	878
PdmI	GAANNNNTTC	2 cut(s)	111, 396
PfeI	GAWTC	1 cut(s)	887
PflMI	CCANNNNNTGG	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	810
PkrI	GCNGC	5 cut(s)	76, 406, 516, 790, 793
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	689
PshBI	ATTAAT	1 cut(s)	165
Psp124BI	GAGCTC	2 cut(s)	336, 504
Psp6I	CCWGG	3 cut(s)	445, 810, 841
PspGI	CCWGG	3 cut(s)	445, 810, 841
PspN4I	GGNNCC	3 cut(s)	435, 670, 865
PspPI	GGNCC	4 cut(s)	292, 434, 845, 864
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	2 cut(s)	266, 668
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	2 cut(s)	17, 623
RsaNI	GTAC	2 cut(s)	16, 622
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	2 cut(s)	336, 504
SaqAI	TTAA	8 cut(s)	65, 165, 177, 534, 549, 714, 933, 942
SatI	GCNGC	5 cut(s)	75, 405, 515, 789, 792
Sau3AI	GATC	7 cut(s)	124, 266, 319, 417, 478, 565, 668
Sau96I	GGNCC	4 cut(s)	292, 434, 845, 864
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	4 cut(s)	432, 447, 812, 843
SduI	GDGCHC	2 cut(s)	336, 504
SexAI	ACCWGGT	2 cut(s)	445, 841
SfcI	CTRYAG	2 cut(s)	490, 648
SinI	GGWCC	2 cut(s)	845, 864
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	633
SmoI	CTYRAG	1 cut(s)	633
SpeI	ACTAGT	1 cut(s)	610
Sse9I	AATT	8 cut(s)	281, 326, 360, 396, 831, 855, 934, 947
SsiI	CCGC	2 cut(s)	411, 515
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	2 cut(s)	336, 504
StyD4I	CCNGG	4 cut(s)	430, 445, 810, 841
TaaI	ACNGT	6 cut(s)	35, 311, 494, 649, 691, 907
TaqI	TCGA	5 cut(s)	169, 400, 498, 696, 835
TasI	AATT	8 cut(s)	281, 326, 360, 396, 831, 855, 934, 947
TauI	GCSGC	1 cut(s)	517
TfiI	GAWTC	1 cut(s)	887
Tru1I	TTAA	8 cut(s)	65, 165, 177, 534, 549, 714, 933, 942
Tru9I	TTAA	8 cut(s)	65, 165, 177, 534, 549, 714, 933, 942
TscAI	CASTG	4 cut(s)	316, 772, 880, 912
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	4 cut(s)	74, 404, 788, 791
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	5 cut(s)	17, 37, 218, 617, 936
TspRI	CASTG	4 cut(s)	316, 772, 880, 912
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	845, 864
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	1 cut(s)	396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XmiI	GTMKAC	4 cut(s)	30, 644, 728, 777
XmnI	GAANNNNTTC	2 cut(s)	111, 396
XspI	CTAG	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.