Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Reverse (-)

34774660 .. 34777278

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG275800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAAGATGGTGAAGTACCAGCGCTTGGTCTACTGTGTTCTGTTGTTCATCTCTTTGATTGATTTAAGCACGGCAGCTCGCAGTAATCCCCCTGACGATGTTTTGGAATGGGTTCAAAAAGATGATCGCCGTTTCCTGCGTGCCAATATCAGAGTGGGTGATATTAATCGAACCATTAAGTTTTACACCGAGTTTTTTGGGATGAAAGTGTTGAGAAGAAAAGATTTCCCAGAAGTAAATATCTCAAATGCAGTCATTGGGTTTGGATCTGAAGAGACTCAATTTGTTCTGGGCCTCAGCCAACACCACAGTGCAGTTGACAAATTGGAGCTCGGAACAGCCTTCAGTCATTTTGGAATTACAACCCAAGATATTTATACAATGGTTGAAAAAATTCGAGCTGCTGGTGGGGTGATCACTCGTGAACCGGGGCCAGTCGCACCTGGTGGGACTACCATCTACGCCTTTGTGAATGATCCCGATGGCTACAGTTTCGAGCTCATCCTCAGGCCGCCATCACCAGAACCACTTAACCATATGTGTCTTAATGTGGTTGATATTGATCGTTCTATTGACTTCTACGAAAAGGCTTTGGGAATGAACTTACTAGTGCCAAAGTACGACAATACTCAAGAGCAGTATACTGTAGCTATGGTGGGCTATGGATCCAACTATACTCAGACGACCGTCATCGAGCTGAAATATAACTATAATGTGACAGAGTATACCAAAGGAAATGGATATGCACAGGTTGCTATTGGCACTGATGATGTATACAAGAGCGCAGCAGCTGTTGAACAAGCTATCCAGGAACTTGGTGGGAAAATAATTCGACCACCAGGTCCACTTCCAATTATCGGGACCAAAATCACTGCATTCCTTGATTCAGATGGCTTTGAAACAGTGTTGGTGGACAATGAAGACTATCTTAATTATCTTAAACAATTCAAGAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

319

Amino Acids

35.83

Weight (kDa)

5.19

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	46 - 167	5.3e-18	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	177 - 300	2.1e-12	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	840
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccI	GTMKAC	4 cut(s)	30, 641, 725, 774
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	4 cut(s)	274, 470, 660, 673
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	2 cut(s)	291, 328
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	2 cut(s)	17, 620
AfeI	AGCGCT	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	25, 857
AgsI	TTSAA	5 cut(s)	116, 389, 797, 899, 949
AhlI	ACTAGT	1 cut(s)	607
AjnI	CCWGG	3 cut(s)	442, 807, 838
AleI	CACNNNNGTG	1 cut(s)	309
AloI	GAACNNNNNNTCC	2 cut(s)	789, 821
AluBI	AGCT	8 cut(s)	77, 331, 401, 499, 650, 697, 791, 803
AluI	AGCT	8 cut(s)	77, 331, 401, 499, 650, 697, 791, 803
Alw21I	GWGCWC	2 cut(s)	333, 501
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	4 cut(s)	274, 470, 660, 673
AlwNI	CAGNNNCTG	1 cut(s)	791
Aor51HI	AGCGCT	1 cut(s)	23
AoxI	GGCC	3 cut(s)	292, 431, 509
ApeKI	GCWGC	4 cut(s)	74, 401, 785, 788
ApoI	RAATTY	1 cut(s)	393
AseI	ATTAAT	1 cut(s)	165
Asp700I	GAANNNNTTC	2 cut(s)	111, 393
AspLEI	GCGC	2 cut(s)	24, 785
AspS9I	GGNCC	4 cut(s)	292, 431, 842, 861
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	4 cut(s)	22, 170, 424, 510
AvaII	GGWCC	2 cut(s)	842, 861
AxyI	CCTNAGG	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	665
BanII	GRGCYC	2 cut(s)	333, 501
BauI	CACGAG	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	927
Bbv12I	GWGCWC	2 cut(s)	333, 501
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	4 cut(s)	86, 388, 797, 800
BccI	CCATC	4 cut(s)	464, 476, 523, 884
BceAI	ACGGC	2 cut(s)	87, 114
BciT130I	CCWGG	3 cut(s)	444, 809, 840
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	269
BcuI	ACTAGT	1 cut(s)	607
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	2 cut(s)	487, 645
BfoI	RGCGCY	1 cut(s)	25
BisI	GCNGC	5 cut(s)	75, 402, 512, 786, 789
BlsI	GCNGC	5 cut(s)	76, 403, 513, 787, 790
Bme1390I	CCNGG	4 cut(s)	429, 444, 809, 840
Bme18I	GGWCC	2 cut(s)	842, 861
BmgT120I	GGNCC	4 cut(s)	292, 431, 842, 861
BmiI	GGNNCC	3 cut(s)	432, 667, 862
BmrFI	CCNGG	4 cut(s)	429, 444, 809, 840
BoxI	GACNNNNGTC	1 cut(s)	686
BpiI	GAAGAC	1 cut(s)	927
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	615
BpuMI	CCSGG	1 cut(s)	429
BsaBI	GATNNNNATC	2 cut(s)	165, 561
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 857
Bse1I	ACTGG	1 cut(s)	434
Bse21I	CCTNAGG	1 cut(s)	506
Bse8I	GATNNNNATC	2 cut(s)	165, 561
BseBI	CCWGG	3 cut(s)	444, 809, 840
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	2 cut(s)	207, 501
BseJI	GATNNNNATC	2 cut(s)	165, 561
BseLI	CCNNNNNNNGG	2 cut(s)	25, 857
BseMII	CTCAG	3 cut(s)	310, 520, 692
BseNI	ACTGG	1 cut(s)	434
BseXI	GCAGC	4 cut(s)	86, 388, 797, 800
BsgI	GTGCAG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	687
BshFI	GGCC	3 cut(s)	294, 433, 511
BsiEI	CGRYCG	1 cut(s)	687
BsiHKAI	GWGCWC	2 cut(s)	333, 501
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	2 cut(s)	463, 874
BslI	CCNNNNNNNGG	2 cut(s)	25, 857
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	463, 874
BsmI	GAATGC	1 cut(s)	875
BsnI	GGCC	3 cut(s)	294, 433, 511
Bsp1286I	GDGCHC	2 cut(s)	333, 501
Bsp143I	GATC	6 cut(s)	124, 266, 414, 475, 562, 665
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	3 cut(s)	294, 433, 511
BspCNI	CTCAG	3 cut(s)	309, 519, 691
BspLI	GGNNCC	3 cut(s)	432, 667, 862
BspPI	GGATC	4 cut(s)	274, 470, 660, 673
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	6 cut(s)	124, 266, 414, 475, 562, 665
BssNAI	GTATAC	3 cut(s)	642, 726, 775
BssSI	CACGAG	1 cut(s)	420
Bst1107I	GTATAC	3 cut(s)	642, 726, 775
Bst2BI	CACGAG	1 cut(s)	420
Bst2UI	CCWGG	3 cut(s)	444, 809, 840
Bst4CI	ACNGT	6 cut(s)	35, 311, 491, 646, 688, 904
Bst6I	CTCTTC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	2 cut(s)	79, 141
BstDEI	CTNAG	3 cut(s)	296, 506, 678
BstF5I	GGATG	2 cut(s)	207, 501
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	24, 785
BstKTI	GATC	6 cut(s)	127, 269, 417, 478, 565, 668
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	6 cut(s)	124, 266, 414, 475, 562, 665
BstMCI	CGRYCG	1 cut(s)	687
BstMWI	GCNNNNNNNGC	1 cut(s)	752
BstNI	CCWGG	3 cut(s)	444, 809, 840
BstPAI	GACNNNNGTC	1 cut(s)	686
BstSCI	CCNGG	4 cut(s)	427, 442, 807, 838
BstSFI	CTRYAG	2 cut(s)	487, 645
BstV1I	GCAGC	4 cut(s)	86, 388, 797, 800
BstV2I	GAAGAC	1 cut(s)	927
BstX2I	RGATCY	2 cut(s)	266, 665
BstXI	CCANNNNNNTGG	1 cut(s)	815
BstYI	RGATCY	2 cut(s)	266, 665
BstZ17I	GTATAC	3 cut(s)	642, 726, 775
Bsu36I	CCTNAGG	1 cut(s)	506
BsuRI	GGCC	3 cut(s)	294, 433, 511
BtsCI	GGATG	2 cut(s)	207, 501
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	4 cut(s)	316, 762, 870, 909
Cac8I	GCNNGC	2 cut(s)	79, 141
CaiI	CAGNNNCTG	1 cut(s)	791
CfoI	GCGC	2 cut(s)	24, 785
Cfr13I	GGNCC	4 cut(s)	292, 431, 842, 861
CsiI	ACCWGGT	2 cut(s)	442, 838
Csp6I	GTAC	2 cut(s)	16, 619
CviQI	GTAC	2 cut(s)	16, 619
DdeI	CTNAG	3 cut(s)	296, 506, 678
DpnI	GATC	6 cut(s)	126, 268, 416, 477, 564, 667
DpnII	GATC	6 cut(s)	124, 266, 414, 475, 562, 665
DraIII	CACNNNGTG	1 cut(s)	446
DrdI	GACNNNNNNGTC	1 cut(s)	840
DseDI	GACNNNNNNGTC	1 cut(s)	840
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	2 cut(s)	331, 499
Eco24I	GRGCYC	2 cut(s)	333, 501
Eco47I	GGWCC	2 cut(s)	842, 861
Eco47III	AGCGCT	1 cut(s)	23
Eco53kI	GAGCTC	2 cut(s)	331, 499
Eco57I	CTGAAG	2 cut(s)	291, 328
Eco81I	CCTNAGG	1 cut(s)	506
EcoICRI	GAGCTC	2 cut(s)	331, 499
EcoRII	CCWGG	3 cut(s)	442, 807, 838
EcoT38I	GRGCYC	2 cut(s)	333, 501
FalI	AAGNNNNNCTT	2 cut(s)	912, 944
FaqI	GGGAC	2 cut(s)	463, 874
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	4 cut(s)	30, 641, 725, 774
Fnu4HI	GCNGC	5 cut(s)	75, 402, 512, 786, 789
FokI	GGATG	2 cut(s)	214, 488
FriOI	GRGCYC	2 cut(s)	333, 501
Fsp4HI	GCNGC	5 cut(s)	75, 402, 512, 786, 789
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	2 cut(s)	23, 784
GluI	GCNGC	5 cut(s)	75, 402, 512, 786, 789
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	3 cut(s)	294, 433, 511
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	2 cut(s)	24, 785
Hin6I	GCGC	2 cut(s)	22, 783
HinP1I	GCGC	2 cut(s)	22, 783
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	277, 884
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	4 cut(s)	22, 170, 424, 510
Hpy166II	GTNNAC	8 cut(s)	31, 319, 425, 642, 726, 775, 845, 913
Hpy188I	TCNGA	5 cut(s)	152, 271, 335, 681, 889
Hpy188III	TCNNGA	5 cut(s)	422, 479, 632, 859, 949
Hpy8I	GTNNAC	8 cut(s)	31, 319, 425, 642, 726, 775, 845, 913
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	6 cut(s)	35, 311, 491, 646, 688, 904
HpyCH4V	TGCA	4 cut(s)	251, 314, 746, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	752
HpyF3I	CTNAG	3 cut(s)	296, 506, 678
HspAI	GCGC	2 cut(s)	22, 783
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	6 cut(s)	124, 266, 414, 475, 562, 665
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	4 cut(s)	86, 388, 797, 800
MabI	ACCWGGT	2 cut(s)	442, 838
MaeI	CTAG	1 cut(s)	608
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	6 cut(s)	126, 268, 416, 477, 564, 667
MboI	GATC	6 cut(s)	124, 266, 414, 475, 562, 665
MboII	GAAGA	4 cut(s)	16, 228, 284, 932
MflI	RGATCY	2 cut(s)	266, 665
MhlI	GDGCHC	2 cut(s)	333, 501
MluCI	AATT	8 cut(s)	281, 323, 357, 393, 828, 852, 931, 944
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	2 cut(s)	305, 515
MroXI	GAANNNNTTC	2 cut(s)	111, 393
MseI	TTAA	7 cut(s)	65, 165, 177, 531, 546, 930, 939
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	4 cut(s)	429, 444, 809, 840
Mva1269I	GAATGC	1 cut(s)	875
MvaI	CCWGG	3 cut(s)	444, 809, 840
MwoI	GCNNNNNNNGC	1 cut(s)	752
NciI	CCSGG	1 cut(s)	429
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	6 cut(s)	124, 266, 414, 475, 562, 665
NlaIV	GGNNCC	3 cut(s)	432, 667, 862
NmuCI	GTSAC	1 cut(s)	715
OliI	CACNNNNGTG	1 cut(s)	309
PctI	GAATGC	1 cut(s)	875
PdmI	GAANNNNTTC	2 cut(s)	111, 393
PfeI	GAWTC	1 cut(s)	884
PflMI	CCANNNNNTGG	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	5 cut(s)	76, 403, 513, 787, 790
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	686
PshBI	ATTAAT	1 cut(s)	165
Psp124BI	GAGCTC	2 cut(s)	333, 501
Psp6I	CCWGG	3 cut(s)	442, 807, 838
PspGI	CCWGG	3 cut(s)	442, 807, 838
PspN4I	GGNNCC	3 cut(s)	432, 667, 862
PspPI	GGNCC	4 cut(s)	292, 431, 842, 861
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	266, 665
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	2 cut(s)	17, 620
RsaNI	GTAC	2 cut(s)	16, 619
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	2 cut(s)	333, 501
SaqAI	TTAA	7 cut(s)	65, 165, 177, 531, 546, 930, 939
SatI	GCNGC	5 cut(s)	75, 402, 512, 786, 789
Sau3AI	GATC	6 cut(s)	124, 266, 414, 475, 562, 665
Sau96I	GGNCC	4 cut(s)	292, 431, 842, 861
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	4 cut(s)	429, 444, 809, 840
SduI	GDGCHC	2 cut(s)	333, 501
SexAI	ACCWGGT	2 cut(s)	442, 838
SfcI	CTRYAG	2 cut(s)	487, 645
SinI	GGWCC	2 cut(s)	842, 861
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	630
SmoI	CTYRAG	1 cut(s)	630
SpeI	ACTAGT	1 cut(s)	607
Sse9I	AATT	8 cut(s)	281, 323, 357, 393, 828, 852, 931, 944
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	1 cut(s)	608
SstI	GAGCTC	2 cut(s)	333, 501
StyD4I	CCNGG	4 cut(s)	427, 442, 807, 838
TaaI	ACNGT	6 cut(s)	35, 311, 491, 646, 688, 904
TaqI	TCGA	5 cut(s)	169, 397, 495, 693, 832
TasI	AATT	8 cut(s)	281, 323, 357, 393, 828, 852, 931, 944
TauI	GCSGC	1 cut(s)	514
TfiI	GAWTC	1 cut(s)	884
Tru1I	TTAA	7 cut(s)	65, 165, 177, 531, 546, 930, 939
Tru9I	TTAA	7 cut(s)	65, 165, 177, 531, 546, 930, 939
TscAI	CASTG	4 cut(s)	316, 769, 877, 909
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	4 cut(s)	74, 401, 785, 788
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	5 cut(s)	17, 37, 218, 614, 933
TspRI	CASTG	4 cut(s)	316, 769, 877, 909
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	842, 861
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	1 cut(s)	393
XcmI	CCANNNNNNNNNTGG	2 cut(s)	151, 815
XmiI	GTMKAC	4 cut(s)	30, 641, 725, 774
XmnI	GAANNNNTTC	2 cut(s)	111, 393
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.