Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Forward (+)

16418589 .. 16422123

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15050.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAATACGAAGATGGTGATCAAGTACGAGCAGTTGGTCTGTGCTATTCTTTTGTTCCTCTGTTTGTTTGTAGCTCGGGCAGTAGCCCATGATGATGTGTTAGAATGGATACAAAAAGATAATCATAGTTTCCTCCGTGCCAATATCCGAATTGGTGATCTCGATCGCACCATTAAGTTTTACACAGAATTTTTTGGAATGAAAGTACTCAGTAAAAAAAATTTCCCAGCAGAAAAATACTCGAATGCAGTCATTGGGTTTGGACCTGAAGAATCTCAGTTTGTCATAGGGCTCACAGACCATCACAATGCAGTGGACAAGCTAGACATTGGGACAGCCTTTAGTCATTTTGGAATTTCAACCCAAGATATTTACAACACTGTTGAAAAAGTTCGAGCTAGTGGTGGTGTGATCACTCGTGAACCTGGGCCGCTCGTAGATGGGGGAGAGGGAACCGTTTTCGCCTTCATGAACGATCCCGACGGCTACAGTTTGGAGATCCTCCAGAGGCCGCCAACTCCACAACCACTTTCTCATATATGTCTTAATGTTCTTGATTTAGATCGCTCTATTGAGTTCTACAACAAGTCCTTGGGCATGAACCTACTACAAACGTTTGACTTCCCTCAAGAGCGGTATACCGTAGGTATGGTGGGGTACGGATCCAATCTTACTCAAACAGTTGTTATCGAGCTGAAATACAATTATGATGTGACGGCATATAGAAGAGGAAATGGTTATGCACAGGTTGCTATTGGCACTAATGATGTGTACAAGAGCGCAGCAGCTGTAAAACTGGTAATCAAGGAAGTTGGAGGGGAAATAATATTACCACCAGGTCCAATCCCAAAAATCGACACCAAAATCACTGGATTCCTTGATACAGATGGCTTTCAAACGGTGTTGGTAGACAATGAAGACTACCAGAAAAGAATTGAAGAAAGAGAGATGAAGCAAAATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

322

Amino Acids

35.99

Weight (kDa)

5.25

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	433, 634
AccI	GTMKAC	2 cut(s)	638, 909
AciI	CCGC	3 cut(s)	431, 512, 634
AclI	AACGTT	1 cut(s)	614
AclWI	GGATC	4 cut(s)	470, 493, 657, 670
AcsI	RAATTY	3 cut(s)	188, 220, 354
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	4 cut(s)	26, 207, 659, 773
AgsI	TTSAA	4 cut(s)	360, 386, 896, 938
AjnI	CCWGG	2 cut(s)	424, 835
AluBI	AGCT	5 cut(s)	74, 322, 398, 694, 788
AluI	AGCT	5 cut(s)	74, 322, 398, 694, 788
AlwI	GGATC	4 cut(s)	470, 493, 657, 670
AlwNI	CAGNNNCTG	1 cut(s)	788
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	2 cut(s)	428, 509
ApeKI	GCWGC	2 cut(s)	782, 785
ApoI	RAATTY	3 cut(s)	188, 220, 354
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	3 cut(s)	263, 428, 839
AsuHPI	GGTGA	2 cut(s)	28, 167
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	2 cut(s)	263, 839
BamHI	GGATCC	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	924
BbvI	GCAGC	2 cut(s)	794, 797
BccI	CCATC	4 cut(s)	7, 309, 434, 881
BceAI	ACGGC	2 cut(s)	499, 732
BciT130I	CCWGG	2 cut(s)	426, 837
BciVI	GTATCC	1 cut(s)	102
BclI	TGATCA	2 cut(s)	18, 411
BfaI	CTAG	2 cut(s)	323, 399
BfmI	CTRYAG	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	102
BisI	GCNGC	4 cut(s)	431, 512, 783, 786
BlsI	GCNGC	4 cut(s)	432, 513, 784, 787
BmcAI	AGTACT	1 cut(s)	207
Bme1390I	CCNGG	2 cut(s)	426, 837
Bme18I	GGWCC	2 cut(s)	263, 839
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	3 cut(s)	263, 428, 839
BmiI	GGNNCC	2 cut(s)	454, 664
BmrFI	CCNGG	2 cut(s)	426, 837
BpiI	GAAGAC	1 cut(s)	924
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	612
BsaBI	GATNNNNATC	3 cut(s)	17, 162, 561
BsaJI	CCNNGG	2 cut(s)	425, 591
Bse1I	ACTGG	2 cut(s)	801, 874
Bse8I	GATNNNNATC	3 cut(s)	17, 162, 561
BseBI	CCWGG	2 cut(s)	426, 837
BseDI	CCNNGG	2 cut(s)	425, 591
BseJI	GATNNNNATC	3 cut(s)	17, 162, 561
BseMII	CTCAG	2 cut(s)	223, 290
BseNI	ACTGG	2 cut(s)	801, 874
BseXI	GCAGC	2 cut(s)	794, 797
BseYI	CCCAGC	1 cut(s)	226
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	430, 511
BsiEI	CGRYCG	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	430, 511
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	771
Bsp143I	GATC	8 cut(s)	18, 157, 163, 411, 475, 498, 562, 662
BspACI	CCGC	3 cut(s)	431, 512, 634
BspANI	GGCC	2 cut(s)	430, 511
BspCNI	CTCAG	2 cut(s)	222, 289
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	2 cut(s)	454, 664
BspPI	GGATC	4 cut(s)	470, 493, 657, 670
BsrBI	CCGCTC	2 cut(s)	433, 634
BsrGI	TGTACA	1 cut(s)	771
BsrI	ACTGG	2 cut(s)	801, 874
BssECI	CCNNGG	2 cut(s)	425, 591
BssMI	GATC	8 cut(s)	18, 157, 163, 411, 475, 498, 562, 662
BssNAI	GTATAC	1 cut(s)	639
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	591
Bst1107I	GTATAC	1 cut(s)	639
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	426, 837
Bst4CI	ACNGT	6 cut(s)	382, 457, 491, 643, 682, 901
Bst6I	CTCTTC	1 cut(s)	721
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstAUI	TGTACA	1 cut(s)	771
BstDEI	CTNAG	3 cut(s)	209, 276, 963
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	8 cut(s)	21, 160, 166, 414, 478, 501, 565, 665
BstMBI	GATC	8 cut(s)	18, 157, 163, 411, 475, 498, 562, 662
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	749
BstNI	CCWGG	2 cut(s)	426, 837
BstSCI	CCNGG	2 cut(s)	424, 835
BstSFI	CTRYAG	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	794, 797
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	2 cut(s)	498, 662
BstYI	RGATCY	2 cut(s)	498, 662
BstZ17I	GTATAC	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	430, 511
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	3 cut(s)	318, 378, 867
CaiI	CAGNNNCTG	1 cut(s)	788
CciI	TCATGA	1 cut(s)	468
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	3 cut(s)	263, 428, 839
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	4 cut(s)	25, 206, 658, 772
CviAII	CATG	3 cut(s)	89, 469, 598
CviQI	GTAC	4 cut(s)	25, 206, 658, 772
DdeI	CTNAG	3 cut(s)	209, 276, 963
DpnI	GATC	8 cut(s)	20, 159, 165, 413, 477, 500, 564, 664
DpnII	GATC	8 cut(s)	18, 157, 163, 411, 475, 498, 562, 662
Eam1104I	CTCTTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	2 cut(s)	263, 839
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	424, 835
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	3 cut(s)	92, 472, 601
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	3 cut(s)	88, 468, 597
FbaI	TGATCA	2 cut(s)	18, 411
FblI	GTMKAC	2 cut(s)	638, 909
Fnu4HI	GCNGC	4 cut(s)	431, 512, 783, 786
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	4 cut(s)	431, 512, 783, 786
FspBI	CTAG	2 cut(s)	323, 399
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	4 cut(s)	431, 512, 783, 786
GsaI	CCCAGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	430, 511
HhaI	GCGC	1 cut(s)	782
Hin1II	CATG	3 cut(s)	92, 472, 601
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HinfI	GANTC	2 cut(s)	272, 873
HphI	GGTGA	2 cut(s)	28, 167
Hpy166II	GTNNAC	5 cut(s)	316, 422, 639, 772, 910
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	7 cut(s)	161, 419, 469, 479, 505, 554, 629
Hpy8I	GTNNAC	5 cut(s)	316, 422, 639, 772, 910
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	6 cut(s)	382, 457, 491, 643, 682, 901
HpyCH4IV	ACGT	1 cut(s)	614
HpyCH4V	TGCA	3 cut(s)	248, 311, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	749
HpyF3I	CTNAG	3 cut(s)	209, 276, 963
HpySE526I	ACGT	1 cut(s)	614
Hsp92II	CATG	3 cut(s)	92, 472, 601
HspAI	GCGC	1 cut(s)	780
Ksp22I	TGATCA	2 cut(s)	18, 411
Kzo9I	GATC	8 cut(s)	18, 157, 163, 411, 475, 498, 562, 662
Lsp1109I	GCAGC	2 cut(s)	794, 797
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	2 cut(s)	323, 399
MaeII	ACGT	1 cut(s)	614
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	8 cut(s)	20, 159, 165, 413, 477, 500, 564, 664
MbiI	CCGCTC	2 cut(s)	433, 634
MboI	GATC	8 cut(s)	18, 157, 163, 411, 475, 498, 562, 662
MboII	GAAGA	5 cut(s)	22, 281, 738, 929, 950
MflI	RGATCY	2 cut(s)	498, 662
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	6 cut(s)	150, 188, 220, 354, 703, 933
MmeI	TCCRAC	1 cut(s)	793
MnlI	CCTC	8 cut(s)	68, 143, 442, 501, 512, 636, 722, 809
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	2 cut(s)	174, 546
MslI	CAYNNNNRTG	2 cut(s)	93, 306
MspA1I	CMGCKG	1 cut(s)	788
MspR9I	CCNGG	2 cut(s)	426, 837
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	2 cut(s)	426, 837
MwoI	GCNNNNNNNGC	1 cut(s)	749
NdeII	GATC	8 cut(s)	18, 157, 163, 411, 475, 498, 562, 662
NlaIII	CATG	3 cut(s)	92, 472, 601
NlaIV	GGNNCC	2 cut(s)	454, 664
NmuCI	GTSAC	1 cut(s)	712
PagI	TCATGA	1 cut(s)	468
PctI	GAATGC	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	272, 873
PkrI	GCNGC	4 cut(s)	432, 513, 784, 787
Ple19I	CGATCG	1 cut(s)	166
Psp1406I	AACGTT	1 cut(s)	614
Psp6I	CCWGG	2 cut(s)	424, 835
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	2 cut(s)	424, 835
PspN4I	GGNNCC	2 cut(s)	454, 664
PspPI	GGNCC	3 cut(s)	263, 428, 839
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	2 cut(s)	498, 662
PvuI	CGATCG	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	4 cut(s)	26, 207, 659, 773
RsaNI	GTAC	4 cut(s)	25, 206, 658, 772
RseI	CAYNNNNRTG	2 cut(s)	93, 306
SaqAI	TTAA	2 cut(s)	174, 546
SatI	GCNGC	4 cut(s)	431, 512, 783, 786
Sau3AI	GATC	8 cut(s)	18, 157, 163, 411, 475, 498, 562, 662
Sau96I	GGNCC	3 cut(s)	263, 428, 839
ScaI	AGTACT	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	426, 837
SduI	GDGCHC	1 cut(s)	294
SexAI	ACCWGGT	1 cut(s)	835
SfcI	CTRYAG	1 cut(s)	487
SinI	GGWCC	2 cut(s)	263, 839
SmiMI	CAYNNNNRTG	2 cut(s)	93, 306
SmlI	CTYRAG	1 cut(s)	627
SmoI	CTYRAG	1 cut(s)	627
Sse9I	AATT	6 cut(s)	150, 188, 220, 354, 703, 933
SsiI	CCGC	3 cut(s)	431, 512, 634
SspI	AATATT	1 cut(s)	828
SspMI	CTAG	2 cut(s)	323, 399
StyD4I	CCNGG	2 cut(s)	424, 835
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	6 cut(s)	382, 457, 491, 643, 682, 901
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	5 cut(s)	162, 242, 394, 690, 855
TasI	AATT	6 cut(s)	150, 188, 220, 354, 703, 933
TatI	WGTACW	2 cut(s)	205, 771
TauI	GCSGC	2 cut(s)	433, 514
TfiI	GAWTC	2 cut(s)	272, 873
Tru1I	TTAA	2 cut(s)	174, 546
Tru9I	TTAA	2 cut(s)	174, 546
TscAI	CASTG	3 cut(s)	318, 385, 874
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	2 cut(s)	782, 785
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	7 cut(s)	17, 215, 457, 485, 614, 930, 965
TspGWI	ACGGA	2 cut(s)	125, 675
TspRI	CASTG	3 cut(s)	318, 385, 874
VpaK11BI	GGWCC	2 cut(s)	263, 839
XapI	RAATTY	3 cut(s)	188, 220, 354
XmiI	GTMKAC	2 cut(s)	638, 909
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	2 cut(s)	323, 399
ZrmI	AGTACT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.