Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Forward (+)

12278725 .. 12279801

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0136400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCCTCATCGTCTTTCTCAAATGCACTGGTTTCTCAATTCAAATTGTTGAGGACTCTAGACTTGGAGGGTGTCCAAATTGATAAACTGCCGGATGCAGTTGTTGACCTGTTCAACTTGAGATATTTAAATTTGAACCGCACTTTAATCGAGGAACTTCCTGAGTCCATATGGCGTCTCCGCAACCTTCAATATTTGAAAATCGAGGAAACCAAGATAGAGGCACTTCCACAAGGAATTGCAAAGTTGCTGAACCTGCGCTCTCTAACTATTTATCGCTTCGCTGGGAGCTTTCCGTACTTCAAAATTGCGAGTGGGACAAGAGCGCCATCAAATATTTGTCAGTTGCAGAAATTGCAATGTTTATCAACGATTGAATCAGAAGGGGACACTATTAGACTTATCGGCAACATGACTCAACTCAGGGTCATCGACATATCAAATGTGAAAGAAAGAGATGAGATTGACCTTTGGGTTTCAATTAAGAAGATGACTCTGCTTCAAAGTTTGGTTTTAATGGCAAGTAATGAAGAGGAAATCCTTCCGGTGAAAGCACAATTTTCATCACTTCCGCACCTTAAAAGGCTTCATTTGTGTGGTAGACTGCAAAACGTAATACCTTGGTTTTCTTCACTACATAGCCTCACAATTCTGTATCTGCATTGGTCAAGACTTGAAGACGATGTACTACCTCAAATTGAAGCACTGCCCAATCTGACAATGCTTCATCTTTGTAATTCATATGTTGGGGAAGAGTTGCGTTTCCGCAGAGGCTTTGTAAAGCTGGAGAGGTTGTATTTGTGGAATTTTGCCTCGGTGAAAAAGATTACTATAGAAAAAGGGGTGATGCCAAATCTCCAGTTCTTATCGGTTAAACGGTGCATGGAATTGAAGACAATGCCACTAGGCCTTGAATACCTTTCTAATCTACAAACTTTGCGCCTGGATGATGTCCCTATGGAAGTTATAAAGCCCATTCGGAAAGGAGGTGCGGATCGGTCTAAGGTACAACACATCCCCAAGATCTTACATGTTTTTGAACAGTCATCCGAGCGGGTCCACGAAAACTTGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

358

Amino Acids

41.29

Weight (kDa)

8.97

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	9 - 315	1.9e-42	Leucine-rich repeat region
LRR_8	PF13855	17 - 72	2.8e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	968
Acc36I	ACCTGC	1 cut(s)	264
AccBSI	CCGCTC	1 cut(s)	1054
AccI	GTMKAC	1 cut(s)	601
AciI	CCGC	6 cut(s)	139, 181, 572, 766, 992, 1054
AclWI	GGATC	1 cut(s)	1002
AcsI	RAATTY	2 cut(s)	130, 805
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	3 cut(s)	299, 687, 1008
AflIII	ACRYGT	1 cut(s)	1030
AjnI	CCWGG	1 cut(s)	942
AluBI	AGCT	2 cut(s)	291, 784
AluI	AGCT	2 cut(s)	291, 784
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	1002
AoxI	GGCC	1 cut(s)	907
ApoI	RAATTY	2 cut(s)	130, 805
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	3 cut(s)	261, 328, 942
AspS9I	GGNCC	1 cut(s)	1057
AsuHPI	GGTGA	3 cut(s)	559, 829, 856
AvaII	GGWCC	1 cut(s)	1057
BarI	GAAGNNNNNNTAC	2 cut(s)	669, 701
BbsI	GAAGAC	2 cut(s)	684, 899
BccI	CCATC	1 cut(s)	337
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	1 cut(s)	944
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	59, 905
BfmI	CTRYAG	1 cut(s)	831
BfoI	RGCGCY	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	264
BglII	AGATCT	1 cut(s)	1023
Bme1390I	CCNGG	1 cut(s)	944
Bme18I	GGWCC	1 cut(s)	1057
BmgT120I	GGNCC	1 cut(s)	1057
BmiI	GGNNCC	1 cut(s)	1058
BmrFI	CCNGG	1 cut(s)	944
BmsI	GCATC	2 cut(s)	85, 837
BpiI	GAAGAC	2 cut(s)	684, 899
BpmI	CTGGAG	2 cut(s)	806, 842
BpuEI	CTTGAG	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	620, 813
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	779, 809
Bse1I	ACTGG	2 cut(s)	33, 859
Bse3DI	GCAATG	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	944
BseDI	CCNNGG	2 cut(s)	620, 813
BseGI	GGATG	4 cut(s)	100, 952, 1014, 1046
BseMI	GCAATG	1 cut(s)	365
BseMII	CTCAG	2 cut(s)	153, 436
BseNI	ACTGG	2 cut(s)	33, 859
BseYI	CCCAGC	1 cut(s)	284
BshFI	GGCC	1 cut(s)	909
BsiSI	CCGG	2 cut(s)	92, 545
BslFI	GGGAC	3 cut(s)	331, 401, 938
BsmAI	GTCTC	1 cut(s)	182
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	3 cut(s)	331, 401, 938
BsnI	GGCC	1 cut(s)	909
Bsp143I	GATC	2 cut(s)	994, 1023
BspACI	CCGC	6 cut(s)	139, 181, 572, 766, 992, 1054
BspANI	GGCC	1 cut(s)	909
BspCNI	CTCAG	2 cut(s)	154, 435
BspLI	GGNNCC	1 cut(s)	1058
BspMI	ACCTGC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	1002
BsrBI	CCGCTC	1 cut(s)	1054
BsrDI	GCAATG	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	33, 859
BssECI	CCNNGG	2 cut(s)	620, 813
BssMI	GATC	2 cut(s)	994, 1023
BssNI	GRCGYC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	944
Bst4CI	ACNGT	2 cut(s)	879, 1044
Bst6I	CTCTTC	2 cut(s)	525, 747
BstACI	GRCGYC	1 cut(s)	175
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstDEI	CTNAG	3 cut(s)	162, 422, 1002
BstF5I	GGATG	4 cut(s)	100, 952, 1014, 1046
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	3 cut(s)	261, 328, 942
BstKTI	GATC	2 cut(s)	997, 1026
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	994, 1023
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 355
BstNI	CCWGG	1 cut(s)	944
BstNSI	RCATGY	1 cut(s)	1034
BstSCI	CCNGG	1 cut(s)	942
BstSFI	CTRYAG	1 cut(s)	831
BstV2I	GAAGAC	2 cut(s)	684, 899
BstX2I	RGATCY	1 cut(s)	1023
BstYI	RGATCY	1 cut(s)	1023
BsuRI	GGCC	1 cut(s)	909
BtsCI	GGATG	4 cut(s)	100, 952, 1014, 1046
BtsI	GCAGTG	1 cut(s)	704
BtsIMutI	CAGTG	2 cut(s)	26, 704
BveI	ACCTGC	1 cut(s)	264
CfoI	GCGC	3 cut(s)	261, 328, 942
Cfr13I	GGNCC	1 cut(s)	1057
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	3 cut(s)	298, 686, 1007
CviAII	CATG	3 cut(s)	412, 883, 1031
CviJI	RGCY	7 cut(s)	291, 586, 642, 774, 784, 909, 973
CviKI_1	RGCY	7 cut(s)	291, 586, 642, 774, 784, 909, 973
CviQI	GTAC	3 cut(s)	298, 686, 1007
DdeI	CTNAG	3 cut(s)	162, 422, 1002
DpnI	GATC	2 cut(s)	996, 1025
DpnII	GATC	2 cut(s)	994, 1023
DraI	TTTAAA	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	525, 747
EarI	CTCTTC	2 cut(s)	525, 747
Eco130I	CCWWGG	1 cut(s)	620
Eco147I	AGGCCT	1 cut(s)	909
Eco47I	GGWCC	1 cut(s)	1057
EcoRII	CCWGG	1 cut(s)	942
EcoT14I	CCWWGG	1 cut(s)	620
ErhI	CCWWGG	1 cut(s)	620
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	3 cut(s)	415, 886, 1034
FaqI	GGGAC	3 cut(s)	331, 401, 938
FatI	CATG	3 cut(s)	411, 882, 1030
FauI	CCCGC	1 cut(s)	1047
FauNDI	CATATG	2 cut(s)	170, 742
FblI	GTMKAC	1 cut(s)	601
FokI	GGATG	4 cut(s)	107, 959, 1001, 1033
FspBI	CTAG	2 cut(s)	59, 905
GlaI	GCGC	3 cut(s)	260, 327, 941
GsaI	CCCAGC	1 cut(s)	288
GsuI	CTGGAG	2 cut(s)	806, 842
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	909
HapII	CCGG	2 cut(s)	92, 545
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	3 cut(s)	261, 328, 942
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	415, 886, 1034
Hin6I	GCGC	3 cut(s)	259, 326, 940
HinP1I	GCGC	3 cut(s)	259, 326, 940
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	5 cut(s)	55, 164, 377, 415, 493
HpaII	CCGG	2 cut(s)	92, 545
HphI	GGTGA	3 cut(s)	559, 829, 856
Hpy166II	GTNNAC	3 cut(s)	106, 602, 1060
Hpy188I	TCNGA	4 cut(s)	382, 717, 981, 1051
Hpy188III	TCNNGA	3 cut(s)	59, 161, 669
Hpy8I	GTNNAC	3 cut(s)	106, 602, 1060
HpyAV	CCTTC	3 cut(s)	197, 377, 551
HpyCH4III	ACNGT	2 cut(s)	879, 1044
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	8 cut(s)	26, 98, 242, 349, 358, 607, 661, 882
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 355
HpyF3I	CTNAG	3 cut(s)	162, 422, 1002
HpySE526I	ACGT	1 cut(s)	612
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	415, 886, 1034
HspAI	GCGC	3 cut(s)	259, 326, 940
Kzo9I	GATC	2 cut(s)	994, 1023
LmnI	GCTCC	1 cut(s)	288
LweI	GCATC	2 cut(s)	85, 837
MaeI	CTAG	2 cut(s)	59, 905
MaeII	ACGT	1 cut(s)	612
MalI	GATC	2 cut(s)	996, 1025
MbiI	CCGCTC	1 cut(s)	1054
MboI	GATC	2 cut(s)	994, 1023
MboII	GAAGA	6 cut(s)	499, 542, 621, 689, 764, 904
MflI	RGATCY	1 cut(s)	1023
MlyI	GAGTC	4 cut(s)	49, 173, 409, 487
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	6 cut(s)	128, 146, 483, 515, 579, 873
MslI	CAYNNNNRTG	1 cut(s)	594
MspI	CCGG	2 cut(s)	92, 545
MspR9I	CCNGG	1 cut(s)	944
MvaI	CCWGG	1 cut(s)	944
MwoI	GCNNNNNNNGC	2 cut(s)	256, 355
NdeI	CATATG	2 cut(s)	170, 742
NdeII	GATC	2 cut(s)	994, 1023
NlaIII	CATG	3 cut(s)	415, 886, 1034
NlaIV	GGNNCC	1 cut(s)	1058
NspI	RCATGY	1 cut(s)	1034
PceI	AGGCCT	1 cut(s)	909
PciI	ACATGT	1 cut(s)	1030
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	377
PleI	GAGTC	4 cut(s)	49, 172, 409, 487
PpsI	GAGTC	4 cut(s)	49, 172, 409, 487
PscI	ACATGT	1 cut(s)	1030
PsiI	TTATAA	1 cut(s)	968
Psp6I	CCWGG	1 cut(s)	942
PspFI	CCCAGC	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	942
PspN4I	GGNNCC	1 cut(s)	1058
PspPI	GGNCC	1 cut(s)	1057
PsuI	RGATCY	1 cut(s)	1023
RsaI	GTAC	3 cut(s)	299, 687, 1008
RsaNI	GTAC	3 cut(s)	298, 686, 1007
RseI	CAYNNNNRTG	1 cut(s)	594
SaqAI	TTAA	6 cut(s)	128, 146, 483, 515, 579, 873
Sau3AI	GATC	2 cut(s)	994, 1023
Sau96I	GGNCC	1 cut(s)	1057
SchI	GAGTC	4 cut(s)	49, 173, 409, 487
ScrFI	CCNGG	1 cut(s)	944
SfaNI	GCATC	2 cut(s)	85, 837
SfcI	CTRYAG	1 cut(s)	831
SinI	GGWCC	1 cut(s)	1057
SmiI	ATTTAAAT	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
SseBI	AGGCCT	1 cut(s)	909
SsiI	CCGC	6 cut(s)	139, 181, 572, 766, 992, 1054
SspI	AATATT	2 cut(s)	194, 337
SspMI	CTAG	2 cut(s)	59, 905
StuI	AGGCCT	1 cut(s)	909
StyD4I	CCNGG	1 cut(s)	942
StyI	CCWWGG	1 cut(s)	620
SwaI	ATTTAAAT	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	879, 1044
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	3 cut(s)	150, 204, 432
TaqII	GACCGA	1 cut(s)	987
TatI	WGTACW	1 cut(s)	685
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	6 cut(s)	128, 146, 483, 515, 579, 873
Tru9I	TTAA	6 cut(s)	128, 146, 483, 515, 579, 873
TscAI	CASTG	2 cut(s)	33, 711
TspDTI	ATGAA	5 cut(s)	543, 552, 578, 716, 729
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	2 cut(s)	33, 711
VpaK11BI	GGWCC	1 cut(s)	1057
XapI	RAATTY	2 cut(s)	130, 805
XbaI	TCTAGA	1 cut(s)	58
XceI	RCATGY	1 cut(s)	1034
XmiI	GTMKAC	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	59, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.