Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002543

Physical Location & Seq

Genomic Coordinates Reverse (-)

36170286 .. 36185619

Gene Structure 15334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G025410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAGATGGTGAAGAACCAGCAGTTGGTCTACAGCTGTATTCTTTTGTTCATCTGTTTGATTGATTTAAGCAATGCAGCTCGCAGTAATCCCCCTGACGATGTTTTGGAATGGGTTCAAAAAGATGATCGCCGTTTCCTGCGTGCCAATATCAGAGTTGGTGATCTTAATCGAACCATCAAGTTTTACACCGAGTTTTTTGGGATGGAAGTGTTGAGCAGAAAAGATTTTCCAAAATTAAATATCTCAAATGCAGTCATTGGGTTCGGATCTGAAGAGACTCAATTTGTTCTGGGACTCACCCAACACCACAGTGCAGTTGACAAATTGGAGCTCGGAACAGCCTTCAATCATTTCGGAATTACAACTCAAGATATTTATACAATGGTTGAAAAAATTCGAGCTGCTGGTGGGGTGATCACTCGTGAACCAGGGCCAGTTGCACCCGGCGGAACTACCATCTACGCCTTTGTGAACGATCCCGATGGCTACAGTTTCGAGCTCTTCCTCAGGCCGCCAACTCCAGAACCACTTAATCATATATGTCTTAACGTGGTTGACATTGATCGTTCTATTGACTTCTACCAAAAGGCTTTGGGAATGAACTTACTAGTGCCAAAGTACAACAATGCTCAAGAGCAGTATACTGTAGCTATGGTGGGCTATGGATCCAACTATACTCAGACGACCGTATCATTTCAAAAGTCCTCGAAGAGTTCAGACACTGTTGAAGTAAAAAACCCATATAACTATAATGTGACAGATTATACCAAAGGAAATGGATATGCACAGGTAGCTATTGGCACCGATGATGTATACAAGAGTGCAGCAGTTGTTGAACAGGTTATCCAGGAACTTGGTGGGAAAATAATTCAACCACCAGGTCCAATTCCATTTATCAAGACCAAAATCACTGCATTCCTTGATTCAGATGGCTTTGAAACGGTGTTGGTGGACAATGAAGATTATCTTAAATATCTGAAGGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

330

Amino Acids

36.97

Weight (kDa)

5.09

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	47 - 168	2.8e-17	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	178 - 314	4.9e-11	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19740 FvH4_3g19740 FvH4_3g19740
malus_domestica	MD03G1199000.v1.1 MD11G1215300.v1.1
prunus_persica	Prupe.4G216000_v2.0.a1 Prupe.4G216000_v2.0.a1
pyrus_communis	pycom03g15050
rosa_chinensis	RchiOBHm_Chr5g0033081 RchiOBHm_Chr5g0040331 RchiOBHm_Chr5g0040381
rosa_laevigata	RLG00000033447 RLG00000033972 RLG00000033973
rosa_multiflora	Rmu_sc0000986.1_g000006 Rmu_sc0004516.1_g000009
rosa_roxburghii	Rroxscaffold_1G00040330 Rroxscaffold_1G00040950 Rroxscaffold_1G00040960 Rroxscaffold_1G00046860 Rroxscaffold_1G00046970
rosa_rugosa	Rorug05G0136100 Rorug05G0136200 Rorug05G0136300 Rorug05G0136400 Rorug05G0136500 Rorug05G0136600 Rorug05G0184600 Rorug05G0184700
rosa_samantha	Rh5AG228400 Rh5AG271700 Rh5AG271900 Rh5BG229600 Rh5BG275600 Rh5BG275800 Rh5DG234400 Rh5DG283800 Rh5DG284000
rosa_wichuraiana	Rw5G020900 Rw5G025410 Rw5G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	803
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccI	GTMKAC	3 cut(s)	30, 644, 816
AciI	CCGC	2 cut(s)	450, 515
AclWI	GGATC	4 cut(s)	277, 473, 663, 676
AcsI	RAATTY	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	623
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	8 cut(s)	119, 349, 392, 701, 731, 839, 875, 941
AhlI	ACTAGT	1 cut(s)	610
AjnI	CCWGG	3 cut(s)	430, 849, 880
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AleI	CACNNNNGTG	1 cut(s)	312
AloI	GAACNNNNNNTCC	2 cut(s)	831, 863
AluBI	AGCT	7 cut(s)	36, 80, 334, 404, 502, 653, 797
AluI	AGCT	7 cut(s)	36, 80, 334, 404, 502, 653, 797
Alw21I	GWGCWC	2 cut(s)	336, 504
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	4 cut(s)	277, 473, 663, 676
AlwNI	CAGNNNCTG	1 cut(s)	725
AoxI	GGCC	2 cut(s)	434, 512
ApeKI	GCWGC	3 cut(s)	77, 404, 827
ApoI	RAATTY	1 cut(s)	396
Asp700I	GAANNNNTTC	2 cut(s)	114, 396
AspS9I	GGNCC	2 cut(s)	434, 884
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	4 cut(s)	22, 173, 292, 427
AvaII	GGWCC	1 cut(s)	884
AxyI	CCTNAGG	1 cut(s)	509
BaeI	ACNNNNGTAYC	2 cut(s)	675, 708
BamHI	GGATCC	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	803
BanII	GRGCYC	2 cut(s)	336, 504
BauI	CACGAG	1 cut(s)	423
Bbv12I	GWGCWC	2 cut(s)	336, 504
BbvI	GCAGC	3 cut(s)	89, 391, 839
BccI	CCATC	5 cut(s)	185, 199, 467, 479, 926
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	3 cut(s)	432, 851, 882
BclI	TGATCA	1 cut(s)	417
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	272
BcuI	ACTAGT	1 cut(s)	610
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	3 cut(s)	31, 490, 648
BisI	GCNGC	4 cut(s)	78, 405, 515, 828
BlsI	GCNGC	4 cut(s)	79, 406, 516, 829
Bme1390I	CCNGG	4 cut(s)	432, 447, 851, 882
Bme18I	GGWCC	1 cut(s)	884
BmgT120I	GGNCC	2 cut(s)	434, 884
BmiI	GGNNCC	2 cut(s)	670, 805
BmrFI	CCNGG	4 cut(s)	432, 447, 851, 882
BpmI	CTGGAG	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	354, 618
BpuMI	CCSGG	1 cut(s)	447
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	437
Bse21I	CCTNAGG	1 cut(s)	509
Bse3DI	GCAATG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	3 cut(s)	432, 851, 882
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	210
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	523, 695
BseNI	ACTGG	1 cut(s)	437
BseXI	GCAGC	3 cut(s)	89, 391, 839
BsgI	GTGCAG	2 cut(s)	336, 846
Bsh1285I	CGRYCG	1 cut(s)	690
BshFI	GGCC	2 cut(s)	436, 514
BshNI	GGYRCC	1 cut(s)	803
BsiEI	CGRYCG	1 cut(s)	690
BsiHKAI	GWGCWC	2 cut(s)	336, 504
BsiSI	CCGG	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	917
BsnI	GGCC	2 cut(s)	436, 514
Bsp1286I	GDGCHC	2 cut(s)	336, 504
Bsp143I	GATC	7 cut(s)	127, 163, 269, 417, 478, 565, 668
BspACI	CCGC	2 cut(s)	450, 515
BspANI	GGCC	2 cut(s)	436, 514
BspCNI	CTCAG	2 cut(s)	522, 694
BspLI	GGNNCC	2 cut(s)	670, 805
BspPI	GGATC	4 cut(s)	277, 473, 663, 676
BspQI	GCTCTTC	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	803
BsrDI	GCAATG	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	7 cut(s)	127, 163, 269, 417, 478, 565, 668
BssNAI	GTATAC	2 cut(s)	645, 817
BssSI	CACGAG	1 cut(s)	423
Bst1107I	GTATAC	2 cut(s)	645, 817
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	3 cut(s)	432, 851, 882
Bst4CI	ACNGT	6 cut(s)	314, 494, 649, 691, 727, 946
Bst6I	CTCTTC	4 cut(s)	270, 509, 707, 981
BstC8I	GCNNGC	2 cut(s)	82, 144
BstDEI	CTNAG	2 cut(s)	509, 681
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	7 cut(s)	130, 166, 272, 420, 481, 568, 671
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	7 cut(s)	127, 163, 269, 417, 478, 565, 668
BstMCI	CGRYCG	1 cut(s)	690
BstMWI	GCNNNNNNNGC	1 cut(s)	794
BstNI	CCWGG	3 cut(s)	432, 851, 882
BstSCI	CCNGG	4 cut(s)	430, 445, 849, 880
BstSFI	CTRYAG	3 cut(s)	31, 490, 648
BstV1I	GCAGC	3 cut(s)	89, 391, 839
BstX2I	RGATCY	2 cut(s)	269, 668
BstXI	CCANNNNNNTGG	1 cut(s)	857
BstYI	RGATCY	2 cut(s)	269, 668
BstZ17I	GTATAC	2 cut(s)	645, 817
Bsu36I	CCTNAGG	1 cut(s)	509
BsuRI	GGCC	2 cut(s)	436, 514
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	912
BtsIMutI	CAGTG	3 cut(s)	319, 723, 912
Cac8I	GCNNGC	2 cut(s)	82, 144
CaiI	CAGNNNCTG	1 cut(s)	725
Cfr13I	GGNCC	2 cut(s)	434, 884
CsiI	ACCWGGT	1 cut(s)	880
Csp6I	GTAC	1 cut(s)	622
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	2 cut(s)	509, 681
DpnI	GATC	7 cut(s)	129, 165, 271, 419, 480, 567, 670
DpnII	GATC	7 cut(s)	127, 163, 269, 417, 478, 565, 668
Eam1104I	CTCTTC	4 cut(s)	270, 509, 707, 981
EarI	CTCTTC	4 cut(s)	270, 509, 707, 981
EciI	GGCGGA	1 cut(s)	465
Ecl136II	GAGCTC	2 cut(s)	334, 502
Eco24I	GRGCYC	2 cut(s)	336, 504
Eco47I	GGWCC	1 cut(s)	884
Eco53kI	GAGCTC	2 cut(s)	334, 502
Eco57I	CTGAAG	1 cut(s)	294
Eco81I	CCTNAGG	1 cut(s)	509
EcoICRI	GAGCTC	2 cut(s)	334, 502
EcoRII	CCWGG	3 cut(s)	430, 849, 880
EcoT38I	GRGCYC	2 cut(s)	336, 504
FalI	AAGNNNNNCTT	2 cut(s)	954, 986
FaqI	GGGAC	1 cut(s)	309
FbaI	TGATCA	1 cut(s)	417
FblI	GTMKAC	3 cut(s)	30, 644, 816
Fnu4HI	GCNGC	4 cut(s)	78, 405, 515, 828
FokI	GGATG	1 cut(s)	217
FriOI	GRGCYC	2 cut(s)	336, 504
Fsp4HI	GCNGC	4 cut(s)	78, 405, 515, 828
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	4 cut(s)	78, 405, 515, 828
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	436, 514
HapII	CCGG	1 cut(s)	447
HincII	GTYRAC	2 cut(s)	322, 559
HindII	GTYRAC	2 cut(s)	322, 559
HinfI	GANTC	3 cut(s)	280, 297, 926
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	4 cut(s)	22, 173, 292, 427
Hpy166II	GTNNAC	8 cut(s)	31, 322, 428, 475, 559, 645, 817, 955
Hpy188I	TCNGA	9 cut(s)	155, 269, 274, 338, 359, 684, 721, 931, 981
Hpy188III	TCNNGA	6 cut(s)	371, 425, 482, 524, 635, 901
Hpy8I	GTNNAC	8 cut(s)	31, 322, 428, 475, 559, 645, 817, 955
HpyAV	CCTTC	2 cut(s)	355, 976
HpyCH4III	ACNGT	6 cut(s)	314, 494, 649, 691, 727, 946
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	7 cut(s)	77, 254, 317, 443, 788, 827, 917
HpyF10VI	GCNNNNNNNGC	1 cut(s)	794
HpyF3I	CTNAG	2 cut(s)	509, 681
HpySE526I	ACGT	1 cut(s)	552
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	7 cut(s)	127, 163, 269, 417, 478, 565, 668
LguI	GCTCTTC	1 cut(s)	509
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	3 cut(s)	89, 391, 839
MabI	ACCWGGT	1 cut(s)	880
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	7 cut(s)	129, 165, 271, 419, 480, 567, 670
MboI	GATC	7 cut(s)	127, 163, 269, 417, 478, 565, 668
MboII	GAAGA	6 cut(s)	16, 25, 287, 496, 724, 974
MflI	RGATCY	2 cut(s)	269, 668
MhlI	GDGCHC	2 cut(s)	336, 504
MluCI	AATT	7 cut(s)	236, 284, 326, 360, 396, 870, 888
MlyI	GAGTC	2 cut(s)	274, 291
MmeI	TCCRAC	1 cut(s)	696
MnlI	CCTC	2 cut(s)	518, 718
MroXI	GAANNNNTTC	2 cut(s)	114, 396
MseI	TTAA	6 cut(s)	68, 168, 239, 534, 549, 972
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	36
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	4 cut(s)	432, 447, 851, 882
Mva1269I	GAATGC	1 cut(s)	917
MvaI	CCWGG	3 cut(s)	432, 851, 882
MwoI	GCNNNNNNNGC	1 cut(s)	794
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	7 cut(s)	127, 163, 269, 417, 478, 565, 668
NlaIV	GGNNCC	2 cut(s)	670, 805
NmuCI	GTSAC	1 cut(s)	757
OliI	CACNNNNGTG	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	509
PctI	GAATGC	1 cut(s)	917
PdmI	GAANNNNTTC	2 cut(s)	114, 396
PfeI	GAWTC	1 cut(s)	926
PflMI	CCANNNNNTGG	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	849
PkrI	GCNGC	4 cut(s)	79, 406, 516, 829
PleI	GAGTC	2 cut(s)	274, 291
PpsI	GAGTC	2 cut(s)	274, 291
Psp124BI	GAGCTC	2 cut(s)	336, 504
Psp6I	CCWGG	3 cut(s)	430, 849, 880
PspGI	CCWGG	3 cut(s)	430, 849, 880
PspN4I	GGNNCC	2 cut(s)	670, 805
PspPI	GGNCC	2 cut(s)	434, 884
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	2 cut(s)	269, 668
PvuII	CAGCTG	1 cut(s)	36
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
RseI	CAYNNNNRTG	1 cut(s)	312
SacI	GAGCTC	2 cut(s)	336, 504
SapI	GCTCTTC	1 cut(s)	509
SaqAI	TTAA	6 cut(s)	68, 168, 239, 534, 549, 972
SatI	GCNGC	4 cut(s)	78, 405, 515, 828
Sau3AI	GATC	7 cut(s)	127, 163, 269, 417, 478, 565, 668
Sau96I	GGNCC	2 cut(s)	434, 884
SchI	GAGTC	2 cut(s)	274, 291
ScrFI	CCNGG	4 cut(s)	432, 447, 851, 882
SduI	GDGCHC	2 cut(s)	336, 504
SexAI	ACCWGGT	1 cut(s)	880
SfcI	CTRYAG	3 cut(s)	31, 490, 648
SinI	GGWCC	1 cut(s)	884
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	2 cut(s)	369, 633
SmoI	CTYRAG	2 cut(s)	369, 633
SpeI	ACTAGT	1 cut(s)	610
Sse9I	AATT	7 cut(s)	236, 284, 326, 360, 396, 870, 888
SsiI	CCGC	2 cut(s)	450, 515
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	2 cut(s)	336, 504
StyD4I	CCNGG	4 cut(s)	430, 445, 849, 880
TaaI	ACNGT	6 cut(s)	314, 494, 649, 691, 727, 946
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	4 cut(s)	172, 400, 498, 710
TasI	AATT	7 cut(s)	236, 284, 326, 360, 396, 870, 888
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	1 cut(s)	517
TfiI	GAWTC	1 cut(s)	926
Tru1I	TTAA	6 cut(s)	68, 168, 239, 534, 549, 972
Tru9I	TTAA	6 cut(s)	68, 168, 239, 534, 549, 972
TscAI	CASTG	3 cut(s)	319, 730, 919
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	3 cut(s)	77, 404, 827
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	4 cut(s)	17, 40, 617, 975
TspRI	CASTG	3 cut(s)	319, 730, 919
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	884
XapI	RAATTY	1 cut(s)	396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XmiI	GTMKAC	3 cut(s)	30, 644, 816
XmnI	GAANNNNTTC	2 cut(s)	114, 396
XspI	CTAG	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.