Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000967

Physical Location & Seq

Genomic Coordinates Forward (+)

14296119 .. 14297029

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCGTCTCCCCAGCAAAACGCACAAGCAAATTTCCAAGACTTGCTGCCCACCATGGCCGACAAGCTCGGCGGAGACGGCTTGATCGGCGAGCTCTGTAATGGGTTCACTCTTTTGATGGATCCCGCCAAGGGGGTCATCACGTTCGAGAGCCTCAAGAGGAACTCGGCTCTCATGGGCCTGCAGGACCTGAGCGACGACGATCTACGGTCCATGTTGCAGGAGGGCGATTTCGACGGCGATGGGGCGCTTAATCAGATGGAGTTTTGTGTGTTGATGTTTAGATTGAGTCCCGAGCTTATGGAGGAGTCTCGCCTCTGGCTCGACGATGTTCTTCAACACGAGTTTAAGCATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

120

Amino Acids

13.29

Weight (kDa)

4.17

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	44 - 95	2.4e-20	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27280 AT5G54490
fragaria_vesca	FvH4_3g03600 FvH4_3g03610 FvH4_3g21340 FvH4_6g44060
malus_domestica	MD03G1185700.v1.1 MD05G1329200.v1.1 MD05G1329500.v1.1 MD09G1101400.v1.1 MD10G1306100.v1.1 MD11G1233100.v1.1 MD17G1088900.v1.1
prunus_persica	Prupe.3G224800_v2.0.a1 Prupe.4G033300_v2.0.a1 Prupe.4G033400_v2.0.a1 Prupe.4G033500_v2.0.a1 Prupe.4G193800_v2.0.a1
pyrus_communis	pycom03g16550 pycom05g30250 pycom05g30260
rosa_chinensis	RchiOBHm_Chr2g0160761 RchiOBHm_Chr5g0005661 RchiOBHm_Chr5g0005671 RchiOBHm_Chr5g0036541
rosa_laevigata	RLG00000021240 RLG00000031315 RLG00000031316 RLG00000033704
rosa_multiflora	Rmu_sc0000149.1_g000045 Rmu_sc0000570.1_g000024 Rmu_sc0000570.1_g000026 Rmu_sc0002773.1_g000010 Rmu_sc0006059.1_g000036
rosa_roxburghii	Rroxscaffold_1G00044350 Rroxscaffold_1G00070170 Rroxscaffold_1G00070180 Rroxscaffold_2G00089390
rosa_rugosa	Rorug02G0485800 Rorug04G0417000 Rorug04G0417100 Rorug05G0157600
rosa_samantha	Rh2AG550800 Rh2CG535200 Rh2DG574300 Rh5AG044500 Rh5AG044700 Rh5AG249300 Rh5BG043400 Rh5BG043500 Rh5BG250500 Rh5CG052100 Rh5CG052300 Rh5CG282900 Rh5DG043300 Rh5DG043400 Rh5DG258500
rosa_wichuraiana	Rw0G008330 Rw0G008340 Rw2G045640 Rw5G004480 Rw5G004490 Rw5G022930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 126
AclWI	GGATC	2 cut(s)	116, 129
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	131, 132
AgsI	TTSAA	1 cut(s)	338
AluBI	AGCT	3 cut(s)	67, 94, 298
AluI	AGCT	3 cut(s)	67, 94, 298
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	3 cut(s)	12, 69, 315
AlwI	GGATC	2 cut(s)	116, 129
AlwNI	CAGNNNCTG	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	2 cut(s)	57, 178
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	3 cut(s)	178, 187, 210
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	187, 210
BamHI	GGATCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	3 cut(s)	112, 236, 253
BceAI	ACGGC	2 cut(s)	94, 253
BcoDI	GTCTC	3 cut(s)	12, 69, 315
BfmI	CTRYAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	187, 210
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	178, 187, 210
BmiI	GGNNCC	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	54, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 132
BseDI	CCNNGG	2 cut(s)	54, 129
BseLI	CCNNNNNNNGG	2 cut(s)	131, 132
BseMII	CTCAG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	33
BseYI	CCCAGC	1 cut(s)	12
BshFI	GGCC	2 cut(s)	59, 180
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	2 cut(s)	131, 132
BsmAI	GTCTC	3 cut(s)	12, 69, 315
BsmBI	CGTCTC	2 cut(s)	12, 69
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	59, 180
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	84, 121, 202
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	2 cut(s)	72, 126
BspANI	GGCC	2 cut(s)	59, 180
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	2 cut(s)	116, 129
BssECI	CCNNGG	2 cut(s)	54, 129
BssMI	GATC	3 cut(s)	84, 121, 202
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	2 cut(s)	54, 129
Bst2BI	CACGAG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	92, 182
BstDEI	CTNAG	1 cut(s)	191
BstDSI	CCRYGG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	3 cut(s)	87, 124, 205
BstMAI	GTCTC	3 cut(s)	12, 69, 315
BstMBI	GATC	3 cut(s)	84, 121, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 87
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	59, 180
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	92, 182
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	3 cut(s)	178, 187, 210
CviAII	CATG	3 cut(s)	55, 175, 214
CviJI	RGCY	9 cut(s)	59, 67, 81, 94, 153, 170, 180, 298, 322
CviKI_1	RGCY	9 cut(s)	59, 67, 81, 94, 153, 170, 180, 298, 322
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	3 cut(s)	86, 123, 204
DpnII	GATC	3 cut(s)	84, 121, 202
EaeI	YGGCCR	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	54, 129
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	187, 210
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	54, 129
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	2 cut(s)	54, 129
Esp3I	CGTCTC	2 cut(s)	12, 69
FaeI	CATG	3 cut(s)	58, 178, 217
FaiI	YATR	4 cut(s)	56, 176, 215, 302
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	3 cut(s)	54, 174, 213
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	47
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	47
GsaI	CCCAGC	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	59, 180
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	58, 178, 217
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	2 cut(s)	289, 308
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	3 cut(s)	148, 157, 293
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	4 cut(s)	200, 203, 239, 329
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	2 cut(s)	184, 220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 87
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	58, 178, 217
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	3 cut(s)	84, 121, 202
LpnPI	CCDG	6 cut(s)	26, 170, 194, 203, 206, 304
Lsp1109I	GCAGC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	143
MalI	GATC	3 cut(s)	86, 123, 204
MboI	GATC	3 cut(s)	84, 121, 202
MboII	GAAGA	1 cut(s)	326
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	298, 317
MnlI	CCTC	5 cut(s)	153, 164, 217, 298, 326
MseI	TTAA	2 cut(s)	252, 348
MwoI	GCNNNNNNNGC	2 cut(s)	78, 87
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	3 cut(s)	84, 121, 202
NlaIII	CATG	3 cut(s)	58, 178, 217
NlaIV	GGNNCC	1 cut(s)	123
NmeAIII	GCCGAG	2 cut(s)	48, 146
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	2 cut(s)	297, 316
PpsI	GAGTC	2 cut(s)	297, 316
PpuMI	RGGWCCY	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	3 cut(s)	178, 187, 210
PspPPI	RGGWCCY	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	252, 348
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	3 cut(s)	84, 121, 202
Sau96I	GGNCC	3 cut(s)	178, 187, 210
SbfI	CCTGCAGG	1 cut(s)	186
SchI	GAGTC	2 cut(s)	298, 317
SdaI	CCTGCAGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	5 cut(s)	69, 96, 146, 192, 300
SfcI	CTRYAG	1 cut(s)	182
SinI	GGWCC	2 cut(s)	187, 210
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse8387I	CCTGCAGG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	72, 126
SstI	GAGCTC	1 cut(s)	96
StyI	CCWWGG	2 cut(s)	54, 129
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	3 cut(s)	147, 234, 324
TasI	AATT	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	252, 348
Tru9I	TTAA	2 cut(s)	252, 348
TseI	GCWGC	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	187, 210
XapI	RAATTY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.