Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000967

Physical Location & Seq

Genomic Coordinates Reverse (-)

22406959 .. 22407341

Gene Structure 383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G224800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCAGGAGTTGGCAAGAGGGCTGTTGATGATTTTGAGGATCTGCTGCCAGAGATGGCTGACAAGCTTGGCGGGGAGGGCCTGATCAGAGAGCTGTGCAATGGGTTCCAGCTGCTGATGGACAAGGACAAAGGGGTCATTACATTGGAGAGCTTGAGGAGCAACTCTGCTCTTCTTGGTCTGCAGAATTTGAGAGAAGATGAGCTTGTGAGCATGATGAGGAAAGGTGACATGGATGGCGATGGAGCTCTCAACCAGATGGAGTTTTGCGTTCTGATGTTCAGACTCAGCCCTGAGTTGATGGAGGAATCTTGGATTTGGCTTGAACAAGCGATGCAGGGGGAGCAAGATAATAAGAGACGTCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

124

Amino Acids

13.93

Weight (kDa)

4.43

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27280 AT5G54490
fragaria_vesca	FvH4_3g03600 FvH4_3g03610 FvH4_3g21340 FvH4_6g44060
malus_domestica	MD03G1185700.v1.1 MD05G1329200.v1.1 MD05G1329500.v1.1 MD09G1101400.v1.1 MD10G1306100.v1.1 MD11G1233100.v1.1 MD17G1088900.v1.1
prunus_persica	Prupe.3G224800_v2.0.a1 Prupe.4G033300_v2.0.a1 Prupe.4G033400_v2.0.a1 Prupe.4G033500_v2.0.a1 Prupe.4G193800_v2.0.a1
pyrus_communis	pycom03g16550 pycom05g30250 pycom05g30260
rosa_chinensis	RchiOBHm_Chr2g0160761 RchiOBHm_Chr5g0005661 RchiOBHm_Chr5g0005671 RchiOBHm_Chr5g0036541
rosa_laevigata	RLG00000021240 RLG00000031315 RLG00000031316 RLG00000033704
rosa_multiflora	Rmu_sc0000149.1_g000045 Rmu_sc0000570.1_g000024 Rmu_sc0000570.1_g000026 Rmu_sc0002773.1_g000010 Rmu_sc0006059.1_g000036
rosa_roxburghii	Rroxscaffold_1G00044350 Rroxscaffold_1G00070170 Rroxscaffold_1G00070180 Rroxscaffold_2G00089390
rosa_rugosa	Rorug02G0485800 Rorug04G0417000 Rorug04G0417100 Rorug05G0157600
rosa_samantha	Rh2AG550800 Rh2CG535200 Rh2DG574300 Rh5AG044500 Rh5AG044700 Rh5AG249300 Rh5BG043400 Rh5BG043500 Rh5BG250500 Rh5CG052100 Rh5CG052300 Rh5CG282900 Rh5DG043300 Rh5DG043400 Rh5DG258500
rosa_wichuraiana	Rw0G008330 Rw0G008340 Rw2G045640 Rw5G004480 Rw5G004490 Rw5G022930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AatII	GACGTC	1 cut(s)	364
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	326
AluBI	AGCT	6 cut(s)	67, 94, 112, 153, 205, 248
AluI	AGCT	6 cut(s)	67, 94, 112, 153, 205, 248
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	46, 112
ApoI	RAATTY	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	33, 99
BccI	CCATC	6 cut(s)	49, 112, 230, 236, 253, 295
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	182
BisI	GCNGC	2 cut(s)	47, 113
BlsI	GCNGC	2 cut(s)	48, 114
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	107
BmsI	GCATC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	2 cut(s)	285, 301
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	33, 99
BshFI	GGCC	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	352
BsmBI	CGTCTC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	40, 84
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	286, 300
BspLI	GGNNCC	1 cut(s)	107
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	106
BssMI	GATC	2 cut(s)	40, 84
BssNI	GRCGYC	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	361
BstDEI	CTNAG	2 cut(s)	287, 294
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	2 cut(s)	43, 87
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	2 cut(s)	40, 84
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 159, 343
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	33, 99
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	81
BtgZI	GCGATG	2 cut(s)	255, 347
BtsCI	GGATG	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	79
CviAII	CATG	2 cut(s)	214, 232
DdeI	CTNAG	2 cut(s)	287, 294
DpnI	GATC	2 cut(s)	42, 86
DpnII	GATC	2 cut(s)	40, 84
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	2 cut(s)	217, 235
FaiI	YATR	2 cut(s)	215, 233
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	2 cut(s)	213, 231
FauI	CCCGC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	47, 113
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	2 cut(s)	47, 113
GluI	GCNGC	2 cut(s)	47, 113
HaeIII	GGCC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	2 cut(s)	217, 235
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	2 cut(s)	285, 308
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	89, 276, 284
Hpy188III	TCNNGA	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	3 cut(s)	99, 184, 337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 159, 343
HpyF3I	CTNAG	2 cut(s)	287, 294
HpySE526I	ACGT	1 cut(s)	361
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	217, 235
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	40, 84
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	159, 245, 343
LpnPI	CCDG	6 cut(s)	63, 95, 122, 269, 306, 323
Lsp1109I	GCAGC	2 cut(s)	33, 99
LweI	GCATC	1 cut(s)	324
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	42, 86
MboI	GATC	2 cut(s)	40, 84
MboII	GAAGA	2 cut(s)	164, 209
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	1 cut(s)	187
MlyI	GAGTC	1 cut(s)	279
MnlI	CCTC	6 cut(s)	12, 31, 70, 150, 213, 298
MspA1I	CMGCKG	1 cut(s)	112
MwoI	GCNNNNNNNGC	3 cut(s)	78, 159, 343
NdeII	GATC	2 cut(s)	40, 84
NlaIII	CATG	2 cut(s)	217, 235
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	48, 114
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	177
SatI	GCNGC	2 cut(s)	47, 113
Sau3AI	GATC	2 cut(s)	40, 84
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	8 cut(s)	69, 96, 114, 155, 207, 229, 250, 364
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	250
TaiI	ACGT	1 cut(s)	364
TasI	AATT	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	2 cut(s)	46, 112
Tsp45I	GTSAC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	187
ZraI	GACGTC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.