Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000967

Physical Location & Seq

Genomic Coordinates Reverse (-)

30411103 .. 30411441

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTTTTCGAAATGGGGTTATTGTGTTTGAAGATTTCTTTCCAGCCATGGTTGAGAAATTGGGAGCAGAAGGGTTTATGGAGGAGCTGTCGAAAGGGTTTCGGTTGTTGACGGATGGAGAGAAGGGAGTGATCACATTTGAGAGCTTGAAGAAGAACTCGGGATTGCTTGGATTGCAAGGCATGAGCGATGAGGAGATCATGTGCATGCTCAAGGAAGGTGATTTGGACGGTGATGGCGCCTTGGATGAGATGGAGTTTTGCACCCTCATGTTCAGATTGAGCCCTGCCATGATGCAAAGTTCTCAAGAATTACTGGTGGTAGCTTTAGATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

113

Amino Acids

12.4

Weight (kDa)

4.18

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	41 - 93	4.4e-19	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27280 AT5G54490
fragaria_vesca	FvH4_3g03600 FvH4_3g03610 FvH4_3g21340 FvH4_6g44060
malus_domestica	MD03G1185700.v1.1 MD05G1329200.v1.1 MD05G1329500.v1.1 MD09G1101400.v1.1 MD10G1306100.v1.1 MD11G1233100.v1.1 MD17G1088900.v1.1
prunus_persica	Prupe.3G224800_v2.0.a1 Prupe.4G033300_v2.0.a1 Prupe.4G033400_v2.0.a1 Prupe.4G033500_v2.0.a1 Prupe.4G193800_v2.0.a1
pyrus_communis	pycom03g16550 pycom05g30250 pycom05g30260
rosa_chinensis	RchiOBHm_Chr2g0160761 RchiOBHm_Chr5g0005661 RchiOBHm_Chr5g0005671 RchiOBHm_Chr5g0036541
rosa_laevigata	RLG00000021240 RLG00000031315 RLG00000031316 RLG00000033704
rosa_multiflora	Rmu_sc0000149.1_g000045 Rmu_sc0000570.1_g000024 Rmu_sc0000570.1_g000026 Rmu_sc0002773.1_g000010 Rmu_sc0006059.1_g000036
rosa_roxburghii	Rroxscaffold_1G00044350 Rroxscaffold_1G00070170 Rroxscaffold_1G00070180 Rroxscaffold_2G00089390
rosa_rugosa	Rorug02G0485800 Rorug04G0417000 Rorug04G0417100 Rorug05G0157600
rosa_samantha	Rh2AG550800 Rh2CG535200 Rh2DG574300 Rh5AG044500 Rh5AG044700 Rh5AG249300 Rh5BG043400 Rh5BG043500 Rh5BG250500 Rh5CG052100 Rh5CG052300 Rh5CG282900 Rh5DG043300 Rh5DG043400 Rh5DG258500
rosa_wichuraiana	Rw0G008330 Rw0G008340 Rw2G045640 Rw5G004480 Rw5G004490 Rw5G022930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	32, 151
AluBI	AGCT	3 cut(s)	88, 147, 326
AluI	AGCT	3 cut(s)	88, 147, 326
Ama87I	CYCGRG	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	233, 245
AsuII	TTCGAA	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	287
BccI	CCATC	3 cut(s)	110, 230, 247
BclI	TGATCA	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	241
BmsI	GCATC	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	10
BpuEI	CTTGAG	2 cut(s)	197, 291
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	48, 243
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 188, 218
Bse1I	ACTGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	48, 243
BseGI	GGATG	2 cut(s)	121, 253
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	2 cut(s)	98, 209
BshNI	GGYRCC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	160
Bsp119I	TTCGAA	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	132, 198
Bsp19I	CCATGG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	241
BspT104I	TTCGAA	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	48, 243
BssMI	GATC	2 cut(s)	132, 198
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	48, 243
Bst4CI	ACNGT	1 cut(s)	233
BstACI	GRCGYC	1 cut(s)	240
BstBI	TTCGAA	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	121, 253
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	2 cut(s)	135, 201
BstMBI	GATC	2 cut(s)	132, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	48
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	121, 253
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	1 cut(s)	242
CviAII	CATG	6 cut(s)	49, 184, 202, 208, 271, 292
CviJI	RGCY	6 cut(s)	5, 47, 88, 147, 285, 326
CviKI_1	RGCY	6 cut(s)	5, 47, 88, 147, 285, 326
DinI	GGCGCC	1 cut(s)	241
DpnI	GATC	2 cut(s)	134, 200
DpnII	GATC	2 cut(s)	132, 198
Eco130I	CCWWGG	2 cut(s)	48, 243
Eco24I	GRGCYC	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	48, 243
EcoT38I	GRGCYC	1 cut(s)	287
EgeI	GGCGCC	1 cut(s)	241
EheI	GGCGCC	1 cut(s)	241
ErhI	CCWWGG	2 cut(s)	48, 243
FaeI	CATG	6 cut(s)	52, 187, 205, 211, 274, 295
FaiI	YATR	8 cut(s)	50, 80, 185, 203, 209, 272, 293, 335
FatI	CATG	6 cut(s)	48, 183, 201, 207, 270, 291
FbaI	TGATCA	1 cut(s)	132
FokI	GGATG	2 cut(s)	128, 260
FriOI	GRGCYC	1 cut(s)	287
GlaI	GCGC	1 cut(s)	241
HaeII	RGCGCY	1 cut(s)	243
HhaI	GCGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	6 cut(s)	52, 187, 205, 211, 274, 295
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HphI	GGTGA	2 cut(s)	233, 245
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	2 cut(s)	162, 308
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	3 cut(s)	65, 118, 212
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	4 cut(s)	178, 207, 264, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	6 cut(s)	52, 187, 205, 211, 274, 295
HspAI	GCGC	1 cut(s)	240
KasI	GGCGCC	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	132, 198
LmnI	GCTCC	2 cut(s)	65, 85
LpnPI	CCDG	3 cut(s)	57, 300, 302
LweI	GCATC	1 cut(s)	285
MalI	GATC	2 cut(s)	134, 200
MboI	GATC	2 cut(s)	132, 198
MboII	GAAGA	3 cut(s)	44, 163, 166
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	2 cut(s)	59, 311
Mly113I	GGCGCC	1 cut(s)	240
MnlI	CCTC	3 cut(s)	76, 187, 278
MslI	CAYNNNNRTG	2 cut(s)	206, 269
MwoI	GCNNNNNNNGC	1 cut(s)	175
NarI	GGCGCC	1 cut(s)	240
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	132, 198
NlaIII	CATG	6 cut(s)	52, 187, 205, 211, 274, 295
NlaIV	GGNNCC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	10
PaeI	GCATGC	1 cut(s)	211
PluTI	GGCGCC	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	241
RseI	CAYNNNNRTG	2 cut(s)	206, 269
Sau3AI	GATC	2 cut(s)	132, 198
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	4 cut(s)	90, 149, 223, 328
SfaNI	GCATC	1 cut(s)	285
SfoI	GGCGCC	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	206, 269
SmlI	CTYRAG	2 cut(s)	212, 306
SmoI	CTYRAG	2 cut(s)	212, 306
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	59, 311
SspDI	GGCGCC	1 cut(s)	239
StyI	CCWWGG	2 cut(s)	48, 243
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	2 cut(s)	10, 92
TasI	AATT	2 cut(s)	59, 311
TspGWI	ACGGA	1 cut(s)	128
XceI	RCATGY	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.