Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000967

Physical Location & Seq

Genomic Coordinates Reverse (-)

17706482 .. 17706822

Gene Structure 341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCTTCCCGGCAAAACCAGCAATCCAATTTCCAAGACTTGTTGCCCACCATGGCCGACAAGCTTGGCGGGGACGGTTTAATAGGCGAGCTCTGTAACGGGTTCAATTTGTTGGTGGATTCTAGATCGATCGACGACGATCTACGGTCCATGGTGGACGAAGGTGATTTCGACGGAGATGGCGCTCTCAATCAGATGGAGTTCTGCGTTCTCATGTTTAGATTGAGTCCTGAGCTCATGGACGAGTCCAGACTCTGGCTCGAAGATGCCCTTCAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

94

Amino Acids

10.46

Weight (kDa)

4.05

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27280 AT5G54490
fragaria_vesca	FvH4_3g03600 FvH4_3g03610 FvH4_3g21340 FvH4_6g44060
malus_domestica	MD03G1185700.v1.1 MD05G1329200.v1.1 MD05G1329500.v1.1 MD09G1101400.v1.1 MD10G1306100.v1.1 MD11G1233100.v1.1 MD17G1088900.v1.1
prunus_persica	Prupe.3G224800_v2.0.a1 Prupe.4G033300_v2.0.a1 Prupe.4G033400_v2.0.a1 Prupe.4G033500_v2.0.a1 Prupe.4G193800_v2.0.a1
pyrus_communis	pycom03g16550 pycom05g30250 pycom05g30260
rosa_chinensis	RchiOBHm_Chr2g0160761 RchiOBHm_Chr5g0005661 RchiOBHm_Chr5g0005671 RchiOBHm_Chr5g0036541
rosa_laevigata	RLG00000021240 RLG00000031315 RLG00000031316 RLG00000033704
rosa_multiflora	Rmu_sc0000149.1_g000045 Rmu_sc0000570.1_g000024 Rmu_sc0000570.1_g000026 Rmu_sc0002773.1_g000010 Rmu_sc0006059.1_g000036
rosa_roxburghii	Rroxscaffold_1G00044350 Rroxscaffold_1G00070170 Rroxscaffold_1G00070180 Rroxscaffold_2G00089390
rosa_rugosa	Rorug02G0485800 Rorug04G0417000 Rorug04G0417100 Rorug05G0157600
rosa_samantha	Rh2AG550800 Rh2CG535200 Rh2DG574300 Rh5AG044500 Rh5AG044700 Rh5AG249300 Rh5BG043400 Rh5BG043500 Rh5BG250500 Rh5CG052100 Rh5CG052300 Rh5CG282900 Rh5DG043300 Rh5DG043400 Rh5DG258500
rosa_wichuraiana	Rw0G008330 Rw0G008340 Rw2G045640 Rw5G004480 Rw5G004490 Rw5G022930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	255
AciI	CCGC	1 cut(s)	69
AcoI	YGGCCR	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	106, 275
AluBI	AGCT	3 cut(s)	64, 91, 235
AluI	AGCT	3 cut(s)	64, 91, 235
Alw21I	GWGCWC	2 cut(s)	93, 237
AlwNI	CAGNNNCTG	1 cut(s)	255
AoxI	GGCC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	147
BanII	GRGCYC	2 cut(s)	93, 237
Bbv12I	GWGCWC	2 cut(s)	93, 237
BccI	CCATC	2 cut(s)	173, 190
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	2 cut(s)	123, 280
BfoI	RGCGCY	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	10
Bsa29I	ATCGAT	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	51, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
BseCI	ATCGAT	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	51, 150
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	93, 237
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	93, 237
Bsp143I	GATC	3 cut(s)	125, 129, 139
Bsp19I	CCATGG	2 cut(s)	51, 150
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	51, 150
BssMI	GATC	3 cut(s)	125, 129, 139
BssT1I	CCWWGG	2 cut(s)	51, 150
Bst4CI	ACNGT	2 cut(s)	77, 147
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	2 cut(s)	51, 150
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	3 cut(s)	128, 132, 142
BstMBI	GATC	3 cut(s)	125, 129, 139
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	8
Bsu15I	ATCGAT	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	56
BsuTUI	ATCGAT	1 cut(s)	128
BtgI	CCRYGG	2 cut(s)	51, 150
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	255
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	147
ClaI	ATCGAT	1 cut(s)	128
CviAII	CATG	4 cut(s)	52, 151, 214, 238
CviJI	RGCY	6 cut(s)	5, 56, 64, 91, 235, 259
CviKI_1	RGCY	6 cut(s)	5, 56, 64, 91, 235, 259
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	3 cut(s)	127, 131, 141
DpnII	GATC	3 cut(s)	125, 129, 139
EaeI	YGGCCR	1 cut(s)	54
Ecl136II	GAGCTC	2 cut(s)	91, 235
Eco130I	CCWWGG	2 cut(s)	51, 150
Eco24I	GRGCYC	2 cut(s)	93, 237
Eco47I	GGWCC	1 cut(s)	147
Eco53kI	GAGCTC	2 cut(s)	91, 235
EcoICRI	GAGCTC	2 cut(s)	91, 235
EcoT14I	CCWWGG	2 cut(s)	51, 150
EcoT38I	GRGCYC	2 cut(s)	93, 237
ErhI	CCWWGG	2 cut(s)	51, 150
FaeI	CATG	4 cut(s)	55, 154, 217, 241
FaiI	YATR	4 cut(s)	53, 152, 215, 239
FalI	AAGNNNNNCTT	1 cut(s)	255
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	4 cut(s)	51, 150, 213, 237
FauI	CCCGC	1 cut(s)	62
FriOI	GRGCYC	2 cut(s)	93, 237
FspBI	CTAG	2 cut(s)	123, 280
GlaI	GCGC	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	10
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	4 cut(s)	55, 154, 217, 241
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	4 cut(s)	119, 226, 245, 252
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	3 cut(s)	123, 230, 249
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	3 cut(s)	137, 140, 176
HpyAV	CCTTC	2 cut(s)	155, 281
HpyCH4III	ACNGT	2 cut(s)	77, 147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	55, 154, 217, 241
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	125, 129, 139
LpnPI	CCDG	5 cut(s)	23, 32, 241, 243, 262
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	123, 280
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	3 cut(s)	127, 131, 141
MboI	GATC	3 cut(s)	125, 129, 139
MboII	GAAGA	1 cut(s)	275
MhlI	GDGCHC	2 cut(s)	93, 237
MluCI	AATT	2 cut(s)	28, 106
MlyI	GAGTC	3 cut(s)	235, 246, 254
MseI	TTAA	1 cut(s)	80
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	10
NcoI	CCATGG	2 cut(s)	51, 150
NdeII	GATC	3 cut(s)	125, 129, 139
NlaIII	CATG	4 cut(s)	55, 154, 217, 241
PfeI	GAWTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	255
Ple19I	CGATCG	1 cut(s)	132
PleI	GAGTC	3 cut(s)	234, 246, 253
PpsI	GAGTC	3 cut(s)	234, 246, 253
Psp124BI	GAGCTC	2 cut(s)	93, 237
PspPI	GGNCC	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	255
PvuI	CGATCG	1 cut(s)	132
SacI	GAGCTC	2 cut(s)	93, 237
SaqAI	TTAA	1 cut(s)	80
Sau3AI	GATC	3 cut(s)	125, 129, 139
Sau96I	GGNCC	1 cut(s)	147
SchI	GAGTC	3 cut(s)	235, 246, 254
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	93, 237
SetI	ASST	4 cut(s)	66, 93, 166, 237
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	147
Sse9I	AATT	2 cut(s)	28, 106
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	2 cut(s)	123, 280
SstI	GAGCTC	2 cut(s)	93, 237
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	2 cut(s)	51, 150
TaaI	ACNGT	2 cut(s)	77, 147
TaqI	TCGA	4 cut(s)	128, 132, 171, 261
TasI	AATT	2 cut(s)	28, 106
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	147
XbaI	TCTAGA	1 cut(s)	122
XspI	CTAG	2 cut(s)	123, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.