Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000967

Physical Location & Seq

Genomic Coordinates Reverse (-)

25311816 .. 25312271

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1185700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTACTCCCCCACTTCTCTCTTTCCCCACCAACAAACATACCCTTTCTCTCACTCATCATTTTTCAAACTCCTCTCTCTCTCTCTCTCTCTCTCCTCCAAATTGTCAATGGCTTCCCAGCAAAACCAGCAATCCAATTTCCAAGACTTGTTGCCCACCATGGCCGACAAGCTTGGCGGGGACGGTTTAATAGGCGAGCTCTGTAATGGGTTCAATTTGTTGGTGGATTCTAGCAAGGGAGTCATCACCTTCGAGAGTCTCAAGAGGAACTCTGCTCTTCTGGGGTTGCAGGATCTGAGCGACGACGATCTACGGTCCATGTTGGACGAAGGTGATTTCGACGGAGACGGCGCTCTCAATCAGATGGAGTTCTGCGTTCTCATGTTTAGATTGAGTCCTGAGCTCATGGACGAGTCCAGACTCTGGCTTGAAGATGCTCTTCAAACGGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

152

Amino Acids

16.74

Weight (kDa)

4.24

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	78 - 130	3.6e-21	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27280 AT5G54490
fragaria_vesca	FvH4_3g03600 FvH4_3g03610 FvH4_3g21340 FvH4_6g44060
malus_domestica	MD03G1185700.v1.1 MD05G1329200.v1.1 MD05G1329500.v1.1 MD09G1101400.v1.1 MD10G1306100.v1.1 MD11G1233100.v1.1 MD17G1088900.v1.1
prunus_persica	Prupe.3G224800_v2.0.a1 Prupe.4G033300_v2.0.a1 Prupe.4G033400_v2.0.a1 Prupe.4G033500_v2.0.a1 Prupe.4G193800_v2.0.a1
pyrus_communis	pycom03g16550 pycom05g30250 pycom05g30260
rosa_chinensis	RchiOBHm_Chr2g0160761 RchiOBHm_Chr5g0005661 RchiOBHm_Chr5g0005671 RchiOBHm_Chr5g0036541
rosa_laevigata	RLG00000021240 RLG00000031315 RLG00000031316 RLG00000033704
rosa_multiflora	Rmu_sc0000149.1_g000045 Rmu_sc0000570.1_g000024 Rmu_sc0000570.1_g000026 Rmu_sc0002773.1_g000010 Rmu_sc0006059.1_g000036
rosa_roxburghii	Rroxscaffold_1G00044350 Rroxscaffold_1G00070170 Rroxscaffold_1G00070180 Rroxscaffold_2G00089390
rosa_rugosa	Rorug02G0485800 Rorug04G0417000 Rorug04G0417100 Rorug05G0157600
rosa_samantha	Rh2AG550800 Rh2CG535200 Rh2DG574300 Rh5AG044500 Rh5AG044700 Rh5AG249300 Rh5BG043400 Rh5BG043500 Rh5BG250500 Rh5CG052100 Rh5CG052300 Rh5CG282900 Rh5DG043300 Rh5DG043400 Rh5DG258500
rosa_wichuraiana	Rw0G008330 Rw0G008340 Rw2G045640 Rw5G004480 Rw5G004490 Rw5G022930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	423
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	300
AcoI	YGGCCR	1 cut(s)	162
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	423
AgsI	TTSAA	4 cut(s)	67, 214, 431, 443
AluBI	AGCT	3 cut(s)	172, 199, 403
AluI	AGCT	3 cut(s)	172, 199, 403
Alw21I	GWGCWC	2 cut(s)	201, 405
Alw26I	GTCTC	2 cut(s)	263, 339
AlwI	GGATC	1 cut(s)	300
AlwNI	CAGNNNCTG	2 cut(s)	295, 423
AoxI	GGCC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	238, 344
AvaII	GGWCC	1 cut(s)	315
BanII	GRGCYC	2 cut(s)	201, 405
Bbv12I	GWGCWC	2 cut(s)	201, 405
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	263, 339
BfaI	CTAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	424
Bpu10I	CCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	287, 390
BseRI	GAGGAG	2 cut(s)	62, 85
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	1 cut(s)	164
BsiHKAI	GWGCWC	2 cut(s)	201, 405
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	2 cut(s)	263, 339
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	201, 405
Bsp143I	GATC	2 cut(s)	292, 307
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	288, 391
BspPI	GGATC	1 cut(s)	300
BspQI	GCTCTTC	2 cut(s)	282, 444
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	292, 307
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	185, 315
Bst6I	CTCTTC	2 cut(s)	282, 444
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	296, 399
BstDSI	CCRYGG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	2 cut(s)	295, 310
BstMAI	GTCTC	2 cut(s)	263, 339
BstMBI	GATC	2 cut(s)	292, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	2 cut(s)	295, 423
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	160, 319, 382, 406
CviJI	RGCY	6 cut(s)	113, 164, 172, 199, 403, 427
CviKI_1	RGCY	6 cut(s)	113, 164, 172, 199, 403, 427
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	296, 399
DpnI	GATC	2 cut(s)	294, 309
DpnII	GATC	2 cut(s)	292, 307
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	2 cut(s)	282, 444
EarI	CTCTTC	2 cut(s)	282, 444
Ecl136II	GAGCTC	2 cut(s)	199, 403
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	2 cut(s)	201, 405
Eco47I	GGWCC	1 cut(s)	315
Eco53kI	GAGCTC	2 cut(s)	199, 403
EcoICRI	GAGCTC	2 cut(s)	199, 403
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	201, 405
ErhI	CCWWGG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	4 cut(s)	163, 322, 385, 409
FaiI	YATR	5 cut(s)	40, 161, 320, 383, 407
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	4 cut(s)	159, 318, 381, 405
FauI	CCCGC	1 cut(s)	170
FriOI	GRGCYC	2 cut(s)	201, 405
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	352
GsaI	CCCAGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	4 cut(s)	163, 322, 385, 409
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	6 cut(s)	227, 240, 256, 394, 413, 420
HphI	GGTGA	2 cut(s)	238, 344
Hpy188I	TCNGA	2 cut(s)	297, 363
Hpy188III	TCNNGA	4 cut(s)	253, 262, 398, 417
Hpy99I	CGWCG	3 cut(s)	305, 308, 344
HpyAV	CCTTC	2 cut(s)	259, 323
HpyCH4III	ACNGT	2 cut(s)	185, 315
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	2 cut(s)	296, 399
Hsp92II	CATG	4 cut(s)	163, 322, 385, 409
HspAI	GCGC	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	292, 307
LguI	GCTCTTC	2 cut(s)	282, 444
LpnPI	CCDG	7 cut(s)	131, 140, 266, 275, 409, 411, 430
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	231
MalI	GATC	2 cut(s)	294, 309
MboI	GATC	2 cut(s)	292, 307
MboII	GAAGA	3 cut(s)	269, 431, 443
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	201, 405
MluCI	AATT	3 cut(s)	101, 136, 214
MlyI	GAGTC	5 cut(s)	249, 265, 403, 414, 422
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	3 cut(s)	83, 106, 258
MseI	TTAA	2 cut(s)	188, 454
MwoI	GCNNNNNNNGC	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	292, 307
NlaIII	CATG	4 cut(s)	163, 322, 385, 409
PciSI	GCTCTTC	2 cut(s)	282, 444
PfeI	GAWTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	423
PleI	GAGTC	5 cut(s)	248, 264, 402, 414, 421
PpsI	GAGTC	5 cut(s)	248, 264, 402, 414, 421
Psp124BI	GAGCTC	2 cut(s)	201, 405
PspFI	CCCAGC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	315
PstNI	CAGNNNCTG	2 cut(s)	295, 423
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	2 cut(s)	201, 405
SapI	GCTCTTC	2 cut(s)	282, 444
SaqAI	TTAA	2 cut(s)	188, 454
Sau3AI	GATC	2 cut(s)	292, 307
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	5 cut(s)	249, 265, 403, 414, 422
SduI	GDGCHC	2 cut(s)	201, 405
SetI	ASST	5 cut(s)	174, 201, 251, 334, 405
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	3 cut(s)	101, 136, 214
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	231
SstI	GAGCTC	2 cut(s)	201, 405
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	185, 315
TaqI	TCGA	2 cut(s)	252, 339
TasI	AATT	3 cut(s)	101, 136, 214
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	188, 454
Tru9I	TTAA	2 cut(s)	188, 454
TspGWI	ACGGA	1 cut(s)	357
Van91I	CCANNNNNTGG	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.