Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000967

Physical Location & Seq

Genomic Coordinates Forward (+)

14696312 .. 14699355

Gene Structure 3044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0157600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCATTGTTGTCAAAATTGCGTTGCATTACGGTGGATGTTACTGGTACATTGATAGCTTACAAGGGGGAGCTTGGTGACTACTATTGCATGGCCGCCAAATCTGTAGGGCAGCCATGCCCTGACTACAAAAGGATGCATGAAGGCTTCAAATATGCATATAAAGATATGGCCAGCAAGTATCCTTGTTTTGGGCATGCTGCAAAAATGCCCAACATCGTATGGTGGAAAACTTGTGTCAGAGATTCCTTTATCAGAGCTGGATATCATTATGATGAGGAGACTTTTGAGAAAGTGTTTCGGCGCATATATGCATCCTTTGGTTCTGCTGCTCCTTATAGCATCTTTGCTGATTCCCAACCATTTCTGAGATGGGTCCGTGAACAAGGTCTTAAAGTTGGACTTGTTAGCAATGCAGAATACCGGTATCAGGATGTCATTCTTCCAGCCTTGGGTTTGAACCAGGGATCTGAATGGGACTTCGGTGTGTTCTCTGGTCTTGAAGGTGTGGAGAAACCAGACCCGAGGATTTATGAGATTGCGCTCGAGAGGGCTGGGAACATAAAACCAGAAGAGGTTCTGCACATAGGGGACAGCATGCGCAAAGACTACTTGCCAGCAACAAGTATTGGGATGCATGCACTGTTATTGGATAGGTTTAAGACATCTGATGCTGAGGAATGGAGGAAATCTGGCGTGGTTGTGCTTCCAGACTTGGAAGCAGCAAAAGAATGGCTTACTTCGGAGAAGTCAGCATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

253

Amino Acids

28.7

Weight (kDa)

6.24

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	8 - 208	1.5e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	82 - 214	4.3e-10	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	172 - 241	4.5e-08	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27280 AT5G54490
fragaria_vesca	FvH4_3g03600 FvH4_3g03610 FvH4_3g21340 FvH4_6g44060
malus_domestica	MD03G1185700.v1.1 MD05G1329200.v1.1 MD05G1329500.v1.1 MD09G1101400.v1.1 MD10G1306100.v1.1 MD11G1233100.v1.1 MD17G1088900.v1.1
prunus_persica	Prupe.3G224800_v2.0.a1 Prupe.4G033300_v2.0.a1 Prupe.4G033400_v2.0.a1 Prupe.4G033500_v2.0.a1 Prupe.4G193800_v2.0.a1
pyrus_communis	pycom03g16550 pycom05g30250 pycom05g30260
rosa_chinensis	RchiOBHm_Chr2g0160761 RchiOBHm_Chr5g0005661 RchiOBHm_Chr5g0005671 RchiOBHm_Chr5g0036541
rosa_laevigata	RLG00000021240 RLG00000031315 RLG00000031316 RLG00000033704
rosa_multiflora	Rmu_sc0000149.1_g000045 Rmu_sc0000570.1_g000024 Rmu_sc0000570.1_g000026 Rmu_sc0002773.1_g000010 Rmu_sc0006059.1_g000036
rosa_roxburghii	Rroxscaffold_1G00044350 Rroxscaffold_1G00070170 Rroxscaffold_1G00070180 Rroxscaffold_2G00089390
rosa_rugosa	Rorug02G0485800 Rorug04G0417000 Rorug04G0417100 Rorug05G0157600
rosa_samantha	Rh2AG550800 Rh2CG535200 Rh2DG574300 Rh5AG044500 Rh5AG044700 Rh5AG249300 Rh5BG043400 Rh5BG043500 Rh5BG250500 Rh5CG052100 Rh5CG052300 Rh5CG282900 Rh5DG043300 Rh5DG043400 Rh5DG258500
rosa_wichuraiana	Rw0G008330 Rw0G008340 Rw2G045640 Rw5G004480 Rw5G004490 Rw5G022930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	475
AcoI	YGGCCR	2 cut(s)	93, 171
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	3 cut(s)	191, 430, 452
AgeI	ACCGGT	1 cut(s)	423
AgsI	TTSAA	3 cut(s)	151, 460, 503
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	3 cut(s)	59, 73, 260
AluI	AGCT	3 cut(s)	59, 73, 260
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	475
Ama87I	CYCGRG	2 cut(s)	523, 545
AoxI	GGCC	2 cut(s)	93, 171
ApeKI	GCWGC	4 cut(s)	112, 200, 329, 722
AsiGI	ACCGGT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	3 cut(s)	306, 544, 603
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	2 cut(s)	523, 545
AvaII	GGWCC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	4 cut(s)	124, 187, 316, 734
BccI	CCATC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	464
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	192
BisI	GCNGC	5 cut(s)	96, 113, 201, 330, 723
BlsI	GCNGC	5 cut(s)	97, 114, 202, 331, 724
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	376
BmeT110I	CYCGRG	2 cut(s)	523, 545
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	5 cut(s)	126, 323, 351, 624, 661
Bpu10I	CCTNAGC	1 cut(s)	675
BsaJI	CCNNGG	3 cut(s)	450, 463, 524
BsaWI	WCCGGW	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 430, 452
Bse118I	RCCGGY	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	3 cut(s)	450, 463, 524
BseGI	GGATG	5 cut(s)	43, 141, 314, 439, 639
BseLI	CCNNNNNNNGG	3 cut(s)	191, 430, 452
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	359, 666
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	4 cut(s)	124, 187, 316, 734
BseYI	CCCAGC	1 cut(s)	554
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	2 cut(s)	95, 173
BshTI	ACCGGT	1 cut(s)	423
BsiHKCI	CYCGRG	2 cut(s)	523, 545
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	2 cut(s)	491, 605
BslI	CCNNNNNNNGG	3 cut(s)	191, 430, 452
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	2 cut(s)	491, 605
BsnI	GGCC	2 cut(s)	95, 173
BsoBI	CYCGRG	2 cut(s)	523, 545
Bsp143I	GATC	1 cut(s)	467
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	95, 173
BspCNI	CTCAG	2 cut(s)	360, 667
BspLI	GGNNCC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	423
BssECI	CCNNGG	3 cut(s)	450, 463, 524
BssMI	GATC	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	34, 645
Bst6I	CTCTTC	1 cut(s)	567
BstC8I	GCNNGC	6 cut(s)	175, 198, 599, 618, 639, 757
BstDEI	CTNAG	2 cut(s)	368, 675
BstF5I	GGATG	5 cut(s)	43, 141, 314, 439, 639
BstHHI	GCGC	3 cut(s)	306, 544, 603
BstKTI	GATC	1 cut(s)	470
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	467
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	4 cut(s)	200, 601, 641, 759
BstSCI	CCNGG	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	4 cut(s)	124, 187, 316, 734
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	95, 173
BtsCI	GGATG	5 cut(s)	43, 141, 314, 439, 639
BtsIMutI	CAGTG	1 cut(s)	641
Cac8I	GCNNGC	6 cut(s)	175, 198, 599, 618, 639, 757
CfoI	GCGC	3 cut(s)	306, 544, 603
Cfr10I	RCCGGY	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	48
CspAI	ACCGGT	1 cut(s)	423
CviAII	CATG	7 cut(s)	91, 117, 140, 197, 598, 638, 756
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	2 cut(s)	368, 675
DpnI	GATC	1 cut(s)	469
DpnII	GATC	1 cut(s)	467
EaeI	YGGCCR	2 cut(s)	93, 171
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	376
Eco88I	CYCGRG	2 cut(s)	523, 545
EcoRII	CCWGG	1 cut(s)	462
EcoRV	GATATC	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	450
EcoT22I	ATGCAT	4 cut(s)	141, 160, 316, 639
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	7 cut(s)	94, 120, 143, 200, 601, 641, 759
FalI	AAGNNNNNCTT	4 cut(s)	387, 419, 720, 752
FaqI	GGGAC	2 cut(s)	491, 605
FatI	CATG	7 cut(s)	90, 116, 139, 196, 597, 637, 755
Fnu4HI	GCNGC	5 cut(s)	96, 113, 201, 330, 723
FokI	GGATG	5 cut(s)	50, 148, 301, 446, 646
Fsp4HI	GCNGC	5 cut(s)	96, 113, 201, 330, 723
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	3 cut(s)	305, 543, 602
GluI	GCNGC	5 cut(s)	96, 113, 201, 330, 723
GsaI	CCCAGC	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	95, 173
HapII	CCGG	1 cut(s)	424
HhaI	GCGC	3 cut(s)	306, 544, 603
Hin1II	CATG	7 cut(s)	94, 120, 143, 200, 601, 641, 759
Hin6I	GCGC	3 cut(s)	304, 542, 601
HinP1I	GCGC	3 cut(s)	304, 542, 601
HinfI	GANTC	2 cut(s)	245, 353
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	6 cut(s)	242, 257, 369, 472, 670, 745
Hpy188III	TCNNGA	4 cut(s)	431, 500, 547, 710
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	137, 497
HpyCH4III	ACNGT	2 cut(s)	34, 645
HpyF3I	CTNAG	2 cut(s)	368, 675
Hsp92II	CATG	7 cut(s)	94, 120, 143, 200, 601, 641, 759
HspAI	GCGC	3 cut(s)	304, 542, 601
Kzo9I	GATC	1 cut(s)	467
LmnI	GCTCC	2 cut(s)	70, 337
Lsp1109I	GCAGC	4 cut(s)	124, 187, 316, 734
LweI	GCATC	5 cut(s)	126, 323, 351, 624, 661
MaeIII	GTNAC	2 cut(s)	40, 77
MalI	GATC	1 cut(s)	469
MboI	GATC	1 cut(s)	467
MboII	GAAGA	2 cut(s)	434, 584
MflI	RGATCY	1 cut(s)	467
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	6 cut(s)	271, 519, 543, 568, 670, 678
Mox20I	TGGCCA	1 cut(s)	173
Mph1103I	ATGCAT	4 cut(s)	141, 160, 316, 639
MroXI	GAANNNNTTC	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	2 cut(s)	393, 660
MslI	CAYNNNNRTG	2 cut(s)	32, 273
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
NdeII	GATC	1 cut(s)	467
NlaIII	CATG	7 cut(s)	94, 120, 143, 200, 601, 641, 759
NlaIV	GGNNCC	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	77
NsbI	TGCGCA	1 cut(s)	602
NsiI	ATGCAT	4 cut(s)	141, 160, 316, 639
NspI	RCATGY	4 cut(s)	200, 601, 641, 759
PaeI	GCATGC	4 cut(s)	200, 601, 641, 759
PaeR7I	CTCGAG	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	245, 353
PinAI	ACCGGT	1 cut(s)	423
PkrI	GCNGC	5 cut(s)	97, 114, 202, 331, 724
Psp6I	CCWGG	1 cut(s)	462
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	2 cut(s)	32, 273
SaqAI	TTAA	2 cut(s)	393, 660
SatI	GCNGC	5 cut(s)	96, 113, 201, 330, 723
Sau3AI	GATC	1 cut(s)	467
Sau96I	GGNCC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	7 cut(s)	61, 75, 262, 391, 508, 579, 659
SfaNI	GCATC	5 cut(s)	126, 323, 351, 624, 661
SfcI	CTRYAG	1 cut(s)	105
Sfr274I	CTCGAG	1 cut(s)	545
SinI	GGWCC	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	545
SmiMI	CAYNNNNRTG	2 cut(s)	32, 273
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
SphI	GCATGC	4 cut(s)	200, 601, 641, 759
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	2 cut(s)	34, 645
TaqI	TCGA	1 cut(s)	546
TasI	AATT	1 cut(s)	17
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	245, 353
Tru1I	TTAA	2 cut(s)	393, 660
Tru9I	TTAA	2 cut(s)	393, 660
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	4 cut(s)	112, 200, 329, 722
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	156
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	648
VpaK11BI	GGWCC	1 cut(s)	376
XceI	RCATGY	4 cut(s)	200, 601, 641, 759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	369
XhoI	CTCGAG	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	576
Zsp2I	ATGCAT	4 cut(s)	141, 160, 316, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.