Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000967

Physical Location & Seq

Genomic Coordinates Reverse (-)

34008366 .. 34009031

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1233100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCTTCCCAGCAAACCCCACAATCCAGTTTCCAAGATTTGTTACCCACCATGGCCGACAAGCTTGGTGGGGACGGTTTAATAGGCGAGCTCTGTAATGGATTCAATTTGTTAATGGATTCCAACAAGGGGGTCATCACCTTCGAGAGTCTCAAGAGGAACTCTGCTCTTCTGGGGTTGCAGGATCTGAGCGACGACGATCTACGGTCCATGTTGGACGAAGGTGATTTCGACGGCGATGGCGCTCTCAATCAGATGGAGTTCTGCGTTCTCATGTTTAGATTGAGTCCTGAGCTTATGGACGAGTCCAAAGTCTGGCTTGAAGACGCTCTTCAACAAGAGTTTAAACATTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

120

Amino Acids

13.35

Weight (kDa)

4.05

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	43 - 94	4.7e-21	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27280 AT5G54490
fragaria_vesca	FvH4_3g03600 FvH4_3g03610 FvH4_3g21340 FvH4_6g44060
malus_domestica	MD03G1185700.v1.1 MD05G1329200.v1.1 MD05G1329500.v1.1 MD09G1101400.v1.1 MD10G1306100.v1.1 MD11G1233100.v1.1 MD17G1088900.v1.1
prunus_persica	Prupe.3G224800_v2.0.a1 Prupe.4G033300_v2.0.a1 Prupe.4G033400_v2.0.a1 Prupe.4G033500_v2.0.a1 Prupe.4G193800_v2.0.a1
pyrus_communis	pycom03g16550 pycom05g30250 pycom05g30260
rosa_chinensis	RchiOBHm_Chr2g0160761 RchiOBHm_Chr5g0005661 RchiOBHm_Chr5g0005671 RchiOBHm_Chr5g0036541
rosa_laevigata	RLG00000021240 RLG00000031315 RLG00000031316 RLG00000033704
rosa_multiflora	Rmu_sc0000149.1_g000045 Rmu_sc0000570.1_g000024 Rmu_sc0000570.1_g000026 Rmu_sc0002773.1_g000010 Rmu_sc0006059.1_g000036
rosa_roxburghii	Rroxscaffold_1G00044350 Rroxscaffold_1G00070170 Rroxscaffold_1G00070180 Rroxscaffold_2G00089390
rosa_rugosa	Rorug02G0485800 Rorug04G0417000 Rorug04G0417100 Rorug05G0157600
rosa_samantha	Rh2AG550800 Rh2CG535200 Rh2DG574300 Rh5AG044500 Rh5AG044700 Rh5AG249300 Rh5BG043400 Rh5BG043500 Rh5BG250500 Rh5CG052100 Rh5CG052300 Rh5CG282900 Rh5DG043300 Rh5DG043400 Rh5DG258500
rosa_wichuraiana	Rw0G008330 Rw0G008340 Rw2G045640 Rw5G004480 Rw5G004490 Rw5G022930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	315
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	129, 315
AgsI	TTSAA	3 cut(s)	106, 323, 335
AluBI	AGCT	3 cut(s)	64, 91, 295
AluI	AGCT	3 cut(s)	64, 91, 295
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	192
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	130, 236
AvaII	GGWCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	2 cut(s)	233, 250
BceAI	ACGGC	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 315
Bse1I	ACTGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	129, 315
BseMII	CTCAG	2 cut(s)	179, 282
BseNI	ACTGG	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	9
BshFI	GGCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	129, 315
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	184, 199
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	180, 283
BspPI	GGATC	1 cut(s)	192
BspQI	GCTCTTC	2 cut(s)	174, 336
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	184, 199
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	77, 207
Bst6I	CTCTTC	2 cut(s)	174, 336
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	188, 291
BstDSI	CCRYGG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	2 cut(s)	187, 202
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	184, 199
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	1 cut(s)	335
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	3 cut(s)	52, 211, 274
CviJI	RGCY	6 cut(s)	5, 56, 64, 91, 295, 319
CviKI_1	RGCY	6 cut(s)	5, 56, 64, 91, 295, 319
DdeI	CTNAG	2 cut(s)	188, 291
DpnI	GATC	2 cut(s)	186, 201
DpnII	GATC	2 cut(s)	184, 199
DraI	TTTAAA	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	174, 336
EarI	CTCTTC	2 cut(s)	174, 336
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	55, 214, 277
FaiI	YATR	4 cut(s)	53, 212, 275, 299
FalI	AAGNNNNNCTT	4 cut(s)	303, 335, 315, 347
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	51, 210, 273
FriOI	GRGCYC	1 cut(s)	93
GlaI	GCGC	1 cut(s)	244
GsaI	CCCAGC	1 cut(s)	13
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	56
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	55, 214, 277
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	5 cut(s)	102, 119, 148, 286, 305
HphI	GGTGA	2 cut(s)	130, 236
Hpy188I	TCNGA	2 cut(s)	189, 255
Hpy188III	TCNNGA	3 cut(s)	145, 154, 290
Hpy99I	CGWCG	3 cut(s)	197, 200, 236
HpyAV	CCTTC	2 cut(s)	151, 215
HpyCH4III	ACNGT	2 cut(s)	77, 207
HpyCH4V	TGCA	1 cut(s)	181
HpyF3I	CTNAG	2 cut(s)	188, 291
Hsp92II	CATG	3 cut(s)	55, 214, 277
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	184, 199
LguI	GCTCTTC	2 cut(s)	174, 336
LpnPI	CCDG	6 cut(s)	23, 40, 158, 167, 301, 303
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	2 cut(s)	186, 201
MboI	GATC	2 cut(s)	184, 199
MboII	GAAGA	3 cut(s)	161, 323, 335
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	3 cut(s)	157, 295, 314
MmeI	TCCRAC	2 cut(s)	147, 195
MnlI	CCTC	1 cut(s)	150
MseI	TTAA	3 cut(s)	80, 113, 345
MssI	GTTTAAAC	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	184, 199
NlaIII	CATG	3 cut(s)	55, 214, 277
PciSI	GCTCTTC	2 cut(s)	174, 336
PfeI	GAWTC	2 cut(s)	102, 119
PflMI	CCANNNNNTGG	1 cut(s)	315
PleI	GAGTC	3 cut(s)	156, 294, 313
PmeI	GTTTAAAC	1 cut(s)	346
PpsI	GAGTC	3 cut(s)	156, 294, 313
Psp124BI	GAGCTC	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	93
SapI	GCTCTTC	2 cut(s)	174, 336
SaqAI	TTAA	3 cut(s)	80, 113, 345
Sau3AI	GATC	2 cut(s)	184, 199
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	3 cut(s)	157, 295, 314
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	5 cut(s)	66, 93, 143, 226, 297
SinI	GGWCC	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	106
SstI	GAGCTC	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	77, 207
TaqI	TCGA	2 cut(s)	144, 231
TasI	AATT	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	102, 119
Tru1I	TTAA	3 cut(s)	80, 113, 345
Tru9I	TTAA	3 cut(s)	80, 113, 345
Van91I	CCANNNNNTGG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.