Prupe.4G033300_v2.0.a1

Calcium-binding protein PBP1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
1555868 .. 1556684
817 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G033300.1

Sequence Viewer

Length: 339 bp
ATGGCGTCGAGAAGTAACGGAGTTGTGTTCGAAGATTTCTTCCCAACAATGGTGGAGAGGTTAGGCACAGAAGGGTTCATGAAGGAGTTGAGCAATGGTTTCAGCTTGTTAATGGATGGGGAGAAAGGTGTCATCACATTCGAGAGCTTGAAGAGGAACTCTGCATTGCTGGGTTTGCAGGGGATGAGTGATGAAGACTTGAGGTGCATGCTGAGGGAAGGCGATTTGGATGGGGATGGGTGCTTGAATGAGATGGAGTTTTCTACTCTTATGTTTAGGTTAAGTCCCGAGTTGATGCAGAATTCTAAAGAATTGTTGGAGGAAGCTCTAACATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.54

Weight (kDa)

4.29

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 301
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 2 cut(s) 151, 247
AluBI AGCT 3 cut(s) 105, 147, 326
AluI AGCT 3 cut(s) 105, 147, 326
Ama87I CYCGRG 1 cut(s) 287
ApoI RAATTY 1 cut(s) 301
AsuII TTCGAA 1 cut(s) 30
AvaI CYCGRG 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 201
BbvCI CCTCAGC 1 cut(s) 212
BccI CCATC 4 cut(s) 110, 224, 230, 247
BmeT110I CYCGRG 1 cut(s) 287
BmsI GCATC 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 212
Bpu14I TTCGAA 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse3DI GCAATG 2 cut(s) 100, 164
BseGI GGATG 4 cut(s) 121, 189, 235, 241
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 2 cut(s) 100, 164
BseMII CTCAG 1 cut(s) 203
BseYI CCCAGC 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 287
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 78
BspT104I TTCGAA 1 cut(s) 30
BsrDI GCAATG 2 cut(s) 100, 164
BssNI GRCGYC 1 cut(s) 5
Bst6I CTCTTC 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 4 cut(s) 121, 189, 235, 241
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNSI RCATGY 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 201
BtsCI GGATG 4 cut(s) 121, 189, 235, 241
Cac8I GCNNGC 1 cut(s) 209
CciI TCATGA 1 cut(s) 78
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviAII CATG 2 cut(s) 79, 208
CviJI RGCY 3 cut(s) 105, 147, 326
CviKI_1 RGCY 3 cut(s) 105, 147, 326
DdeI CTNAG 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 287
EcoRI GAATTC 1 cut(s) 301
FaeI CATG 2 cut(s) 82, 211
FaiI YATR 3 cut(s) 80, 209, 272
FaqI GGGAC 1 cut(s) 270
FatI CATG 2 cut(s) 78, 207
FokI GGATG 4 cut(s) 128, 196, 242, 248
GsaI CCCAGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 82, 211
Hpy188III TCNNGA 4 cut(s) 9, 79, 142, 287
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 65, 76, 212
HpyCH4V TGCA 4 cut(s) 164, 178, 207, 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 212
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 82, 211
LpnPI CCDG 2 cut(s) 155, 164
LweI GCATC 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 14
MboII GAAGA 4 cut(s) 31, 44, 163, 206
MluCI AATT 2 cut(s) 301, 311
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 5 cut(s) 51, 147, 195, 207, 313
MseI TTAA 2 cut(s) 110, 281
MwoI GCNNNNNNNGC 1 cut(s) 175
NlaIII CATG 2 cut(s) 82, 211
NspI RCATGY 1 cut(s) 211
NspV TTCGAA 1 cut(s) 30
PaeI GCATGC 1 cut(s) 211
PagI TCATGA 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 110, 281
SetI ASST 7 cut(s) 62, 107, 130, 149, 206, 281, 328
SfaNI GCATC 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
SphI GCATGC 1 cut(s) 211
Sse9I AATT 2 cut(s) 301, 311
TaqI TCGA 3 cut(s) 8, 30, 141
TasI AATT 2 cut(s) 301, 311
Tru1I TTAA 2 cut(s) 110, 281
Tru9I TTAA 2 cut(s) 110, 281
TspDTI ATGAA 3 cut(s) 67, 95, 207
TspGWI ACGGA 1 cut(s) 33
XapI RAATTY 1 cut(s) 301
XceI RCATGY 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.