Rmu_sc0002773.1_g000010

Calcium-binding protein PBP1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002773.1
OG0000967
Physical Location & Seq
Reverse (-)
28167 .. 28538
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002773.1_g000010.1.cds

Sequence Viewer

Length: 372 bp
atggcaggagttggcaacagggcaaatgttgatttcgaagacttgttaccggagatggcggacaagctcggtggcgaggggctgataagggagctctgcaatggtttccagctgctgatggacaaggagagaggggtcattacgcttgagagcttgaggatgaactctgctgttctgggccttcaggatttgagagaggacgagctagtgagtatgttgaaggaaggtgacttggatggagatggagctctgaatcagatggagttttgcgttttgatgtttagattgagtcctgagctgatggaggagagttgggtttggctcgagcagggcttgcaggaggagctaaatagtaatactaagagaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 map03420
Pfam Domains
Protein Families
EF-hand_8

Protein Analysis

123

Amino Acids

13.85

Weight (kDa)

4.21

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 167
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 8 cut(s) 67, 94, 112, 153, 205, 248, 298, 346
AluI AGCT 8 cut(s) 67, 94, 112, 153, 205, 248, 298, 346
Alw21I GWGCWC 2 cut(s) 96, 250
Alw26I GTCTC 1 cut(s) 358
AlwNI CAGNNNCTG 1 cut(s) 115
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 239
AsuII TTCGAA 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 323
BanII GRGCYC 2 cut(s) 96, 250
BarI GAAGNNNNNNTAC 2 cut(s) 30, 62
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 96, 250
BbvI GCAGC 1 cut(s) 99
BccI CCATC 6 cut(s) 49, 112, 230, 236, 253, 295
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 36
BpuEI CTTGAG 2 cut(s) 167, 175
BsaI GGTCTC 1 cut(s) 358
BsaWI WCCGGW 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 106
BseGI GGATG 2 cut(s) 165, 241
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 2 cut(s) 320, 356
BseXI GCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 96, 250
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 358
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 323
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 96, 250
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 36
BspTNI GGTCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 106
BstAPI GCANNNNNTGC 1 cut(s) 334
BstBI TTCGAA 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 294, 360
BstF5I GGATG 2 cut(s) 165, 241
BstMAI GTCTC 1 cut(s) 358
BstMWI GCNNNNNNNGC 2 cut(s) 334, 343
BstV1I GCAGC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 180
BtsCI GGATG 2 cut(s) 165, 241
Cac8I GCNNGC 1 cut(s) 335
CaiI CAGNNNCTG 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 178
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
DdeI CTNAG 2 cut(s) 294, 360
EciI GGCGGA 1 cut(s) 74
Ecl136II GAGCTC 2 cut(s) 94, 248
Eco24I GRGCYC 2 cut(s) 96, 250
Eco31I GGTCTC 1 cut(s) 358
Eco53kI GAGCTC 2 cut(s) 94, 248
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 2 cut(s) 94, 248
EcoT38I GRGCYC 2 cut(s) 96, 250
FaiI YATR 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 2 cut(s) 172, 248
FriOI GRGCYC 2 cut(s) 96, 250
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 206
GluI GCNGC 1 cut(s) 113
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 50
HinfI GANTC 2 cut(s) 253, 289
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 252, 258
Hpy188III TCNNGA 2 cut(s) 185, 293
HpyAV CCTTC 3 cut(s) 191, 214, 218
HpyCH4V TGCA 2 cut(s) 99, 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 334, 343
HpyF3I CTNAG 2 cut(s) 294, 360
LmnI GCTCC 3 cut(s) 91, 245, 343
LpnPI CCDG 8 cut(s) 4, 63, 122, 161, 170, 306, 314, 323
Lsp1109I GCAGC 1 cut(s) 99
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 2 cut(s) 45, 227
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 2 cut(s) 96, 250
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 6 cut(s) 70, 125, 150, 190, 298, 334
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 334, 343
NmuCI GTSAC 1 cut(s) 227
NspV TTCGAA 1 cut(s) 36
PaeR7I CTCGAG 1 cut(s) 323
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 114
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
Psp124BI GAGCTC 2 cut(s) 96, 250
PspPI GGNCC 1 cut(s) 178
PspXI VCTCGAGB 1 cut(s) 323
PstNI CAGNNNCTG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 112
SacI GAGCTC 2 cut(s) 96, 250
SatI GCNGC 1 cut(s) 113
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 298
SduI GDGCHC 2 cut(s) 96, 250
Sfr274I CTCGAG 1 cut(s) 323
SfuI TTCGAA 1 cut(s) 36
SlaI CTCGAG 1 cut(s) 323
SmlI CTYRAG 3 cut(s) 146, 154, 323
SmoI CTYRAG 3 cut(s) 146, 154, 323
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 2 cut(s) 96, 250
TaqI TCGA 2 cut(s) 36, 324
TfiI GAWTC 1 cut(s) 253
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 176
XhoI CTCGAG 1 cut(s) 323
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.