Prupe.4G193800_v2.0.a1

Calcium-binding protein PBP1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000967
Physical Location & Seq
Forward (+)
11660588 .. 11662101
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G193800.1

Sequence Viewer

Length: 360 bp
ATGGCTTCTCAGCAGAACCCACAATCCAATTTCCAAGATTTGCTGCCCACCATGGCAGACAAGCTTGGTGGGGATGGTTTAATCGGAGAGCTCTGTAATGGGTTCAATTTGTTAATGGATTCTAACAAGGGGGTCATCACCTTTGAGAGCCTCAAGCGGAACTCTGCTCTGCTGGGCTTGCAGGATCTGAGCGATGATGATCTACGGTCCATGTTGGAGGAAGGCGATTTCGACGGTGATGGGGCTCTTAATCAGATGGAGTTCTGTGTTTTGATGTTTAGACTGAGCCCTGAGCTTATGGATGAGTCTCGGTTGTGGCTTGAGCAAGCTCTTCAACAGGAGTTGAAGCATTGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03420 map03420
Pfam Domains
Protein Families
EF-hand_8

Protein Analysis

120

Amino Acids

13.36

Weight (kDa)

4.11

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AclWI GGATC 1 cut(s) 192
AgsI TTSAA 3 cut(s) 106, 335, 346
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 4 cut(s) 64, 91, 295, 329
AluI AGCT 4 cut(s) 64, 91, 295, 329
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 2 cut(s) 130, 248
AvaII GGWCC 1 cut(s) 207
BanII GRGCYC 3 cut(s) 93, 247, 290
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 30
BccI CCATC 3 cut(s) 68, 233, 250
BcoDI GTCTC 1 cut(s) 312
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 2 cut(s) 137, 341
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 51
Bse8I GATNNNNATC 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 79, 307
BseJI GATNNNNATC 1 cut(s) 198
BseMII CTCAG 4 cut(s) 23, 179, 275, 282
BseXI GCAGC 1 cut(s) 30
BseYI CCCAGC 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 312
Bsp1286I GDGCHC 3 cut(s) 93, 247, 290
Bsp143I GATC 2 cut(s) 184, 199
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 1 cut(s) 157
BspCNI CTCAG 4 cut(s) 22, 180, 276, 283
BspPI GGATC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 184, 199
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 2 cut(s) 207, 236
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 179, 327
BstDEI CTNAG 4 cut(s) 9, 188, 284, 291
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 79, 307
BstKTI GATC 2 cut(s) 187, 202
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 2 cut(s) 184, 199
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 2 cut(s) 79, 307
Cac8I GCNNGC 2 cut(s) 179, 327
CaiI CAGNNNCTG 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 207
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 2 cut(s) 52, 211
DdeI CTNAG 4 cut(s) 9, 188, 284, 291
DpnI GATC 2 cut(s) 186, 201
DpnII GATC 2 cut(s) 184, 199
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 51
Eco24I GRGCYC 3 cut(s) 93, 247, 290
Eco47I GGWCC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 51
EcoT38I GRGCYC 3 cut(s) 93, 247, 290
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 2 cut(s) 55, 214
FaiI YATR 3 cut(s) 53, 212, 299
FatI CATG 2 cut(s) 51, 210
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 2 cut(s) 86, 314
FriOI GRGCYC 3 cut(s) 93, 247, 290
Fsp4HI GCNGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 44
GsaI CCCAGC 1 cut(s) 176
Hin1II CATG 2 cut(s) 55, 214
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 2 cut(s) 119, 305
HphI GGTGA 2 cut(s) 130, 248
Hpy188I TCNGA 3 cut(s) 86, 189, 255
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 2 cut(s) 207, 236
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 4 cut(s) 9, 188, 284, 291
Hsp92II CATG 2 cut(s) 55, 214
Kzo9I GATC 2 cut(s) 184, 199
LguI GCTCTTC 1 cut(s) 336
LpnPI CCDG 4 cut(s) 158, 167, 303, 323
Lsp1109I GCAGC 1 cut(s) 30
MalI GATC 2 cut(s) 186, 201
MboI GATC 2 cut(s) 184, 199
MboII GAAGA 1 cut(s) 323
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 3 cut(s) 93, 247, 290
MluCI AATT 2 cut(s) 28, 106
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 2 cut(s) 161, 211
MseI TTAA 3 cut(s) 80, 113, 249
MwoI GCNNNNNNNGC 1 cut(s) 178
NcoI CCATGG 1 cut(s) 51
NdeII GATC 2 cut(s) 184, 199
NlaIII CATG 2 cut(s) 55, 214
PciSI GCTCTTC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 207
PstNI CAGNNNCTG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 184
SacI GAGCTC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 3 cut(s) 80, 113, 249
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 2 cut(s) 184, 199
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 1 cut(s) 314
SduI GDGCHC 3 cut(s) 93, 247, 290
SetI ASST 5 cut(s) 66, 93, 143, 297, 331
SinI GGWCC 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 152, 320
SmoI CTYRAG 2 cut(s) 152, 320
Sse9I AATT 2 cut(s) 28, 106
SsiI CCGC 1 cut(s) 157
SstI GAGCTC 1 cut(s) 93
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 207, 236
TaqI TCGA 1 cut(s) 231
TasI AATT 2 cut(s) 28, 106
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 3 cut(s) 80, 113, 249
Tru9I TTAA 3 cut(s) 80, 113, 249
TseI GCWGC 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.