Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000967

Physical Location & Seq

Genomic Coordinates Forward (+)

31144428 .. 31144787

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033704

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCTTCTCCTCAGCAAAACGCACAAGCAAATTTCCAAGACTTGCTGCCCACCATGGCCGACAAGCTCGGCGGGGACGGTTTGATCGGCGAGCTCTGTAATGGGTTCAATCTTTTGATGGATTCCGCCAAAGGGGTCATCACCTTCGAGAGCCTCAAGAGGAACTCGGCTCTTCTGGGCTTACAGGACCTGAGCGACGACGATCTGCGGTCCATGTTGCAGGAGGGCGATTTCGACGGCGATGGGGCGCTAAATCAGATGGAGTTTTGCGTGTTGATGTTTAGATTGAGTCCCGAACTTATGGAGGAGTCTCGGCTCTGGCTCGACGATGCTCTTCAATACGAGTTTAATCATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

120

Amino Acids

13.25

Weight (kDa)

4.05

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	44 - 95	1.7e-21	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27280 AT5G54490
fragaria_vesca	FvH4_3g03600 FvH4_3g03610 FvH4_3g21340 FvH4_6g44060
malus_domestica	MD03G1185700.v1.1 MD05G1329200.v1.1 MD05G1329500.v1.1 MD09G1101400.v1.1 MD10G1306100.v1.1 MD11G1233100.v1.1 MD17G1088900.v1.1
prunus_persica	Prupe.3G224800_v2.0.a1 Prupe.4G033300_v2.0.a1 Prupe.4G033400_v2.0.a1 Prupe.4G033500_v2.0.a1 Prupe.4G193800_v2.0.a1
pyrus_communis	pycom03g16550 pycom05g30250 pycom05g30260
rosa_chinensis	RchiOBHm_Chr2g0160761 RchiOBHm_Chr5g0005661 RchiOBHm_Chr5g0005671 RchiOBHm_Chr5g0036541
rosa_laevigata	RLG00000021240 RLG00000031315 RLG00000031316 RLG00000033704
rosa_multiflora	Rmu_sc0000149.1_g000045 Rmu_sc0000570.1_g000024 Rmu_sc0000570.1_g000026 Rmu_sc0002773.1_g000010 Rmu_sc0006059.1_g000036
rosa_roxburghii	Rroxscaffold_1G00044350 Rroxscaffold_1G00070170 Rroxscaffold_1G00070180 Rroxscaffold_2G00089390
rosa_rugosa	Rorug02G0485800 Rorug04G0417000 Rorug04G0417100 Rorug05G0157600
rosa_samantha	Rh2AG550800 Rh2CG535200 Rh2DG574300 Rh5AG044500 Rh5AG044700 Rh5AG249300 Rh5BG043400 Rh5BG043500 Rh5BG250500 Rh5CG052100 Rh5CG052300 Rh5CG282900 Rh5DG043300 Rh5DG043400 Rh5DG258500
rosa_wichuraiana	Rw0G008330 Rw0G008340 Rw2G045640 Rw5G004480 Rw5G004490 Rw5G022930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	72, 126, 208
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	109, 338
AluBI	AGCT	2 cut(s)	67, 94
AluI	AGCT	2 cut(s)	67, 94
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	187, 210
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	2 cut(s)	187, 210
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	3 cut(s)	112, 236, 253
BceAI	ACGGC	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	187, 210
BmgT120I	GGNCC	2 cut(s)	187, 210
BmsI	GCATC	1 cut(s)	319
Bpu10I	CCTNAGC	2 cut(s)	12, 191
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	26, 182
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	33
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	89, 276
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	2 cut(s)	89, 276
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	84, 202
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	3 cut(s)	72, 126, 208
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	25, 183
BspQI	GCTCTTC	2 cut(s)	177, 339
BsrDI	GCAATG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	84, 202
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	177, 339
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	12, 191
BstDSI	CCRYGG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	2 cut(s)	87, 205
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	2 cut(s)	84, 202
BstV1I	GCAGC	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	187, 210
CviAII	CATG	2 cut(s)	55, 214
CviJI	RGCY	9 cut(s)	5, 59, 67, 94, 153, 170, 180, 316, 322
CviKI_1	RGCY	9 cut(s)	5, 59, 67, 94, 153, 170, 180, 316, 322
DdeI	CTNAG	2 cut(s)	12, 191
DpnI	GATC	2 cut(s)	86, 204
DpnII	GATC	2 cut(s)	84, 202
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	177, 339
EarI	CTCTTC	2 cut(s)	177, 339
EciI	GGCGGA	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	187, 210
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	58, 217
FaiI	YATR	3 cut(s)	56, 215, 302
FaqI	GGGAC	2 cut(s)	89, 276
FatI	CATG	2 cut(s)	54, 213
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	47
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	58, 217
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	3 cut(s)	122, 289, 308
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	3 cut(s)	148, 157, 293
Hpy99I	CGWCG	4 cut(s)	200, 203, 239, 329
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	12, 191
Hsp92II	CATG	2 cut(s)	58, 217
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	84, 202
LguI	GCTCTTC	2 cut(s)	177, 339
LpnPI	CCDG	5 cut(s)	161, 170, 203, 206, 304
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	319
MalI	GATC	2 cut(s)	86, 204
MboI	GATC	2 cut(s)	84, 202
MboII	GAAGA	2 cut(s)	164, 326
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	298, 317
MnlI	CCTC	5 cut(s)	21, 153, 164, 217, 298
MseI	TTAA	1 cut(s)	348
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	2 cut(s)	84, 202
NlaIII	CATG	2 cut(s)	58, 217
NmeAIII	GCCGAG	3 cut(s)	48, 146, 292
PciSI	GCTCTTC	2 cut(s)	177, 339
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	2 cut(s)	297, 316
PpsI	GAGTC	2 cut(s)	297, 316
PpuMI	RGGWCCY	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	187, 210
PspPPI	RGGWCCY	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	2 cut(s)	177, 339
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	2 cut(s)	84, 202
Sau96I	GGNCC	2 cut(s)	187, 210
SchI	GAGTC	2 cut(s)	298, 317
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	4 cut(s)	69, 96, 146, 192
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	2 cut(s)	187, 210
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	72, 126, 208
SstI	GAGCTC	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	3 cut(s)	147, 234, 324
TasI	AATT	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseI	GCWGC	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	187, 210
XapI	RAATTY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.