FvH4_3g22807

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007494
Physical Location & Seq
Reverse (-)
15899098 .. 15899813
716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22807.t1

Sequence Viewer

Length: 603 bp
ATGGCCTCCAAGAACACCCAAGCTATCTCAACGAAGAAATCCAAACCAACGACCTCTAGGTCAAGCAGCGGATCCTCTAGTCATGTCACCCATAGCATGGCAACGAAATCCACAACATTCATAGCTCTGCCTTCCAAGCCTCGCCAACCAATCATCACCCTGGAAAACCTAAGGGCAGTCAGGCATGTTCCTCGAAGTGAAGAGAGGGAAACTCCAAAGAAGCCAAGGGAGCGATCGTCCTCACTTGCCTCGGACGGTGAATCAAGCATGGTTCATACCATTGGAGTCCTAATGGTGATGAAAACAACACGTATGTCATGCCGTTGGGTGATTCATCGCAACTTATCCATATGCAAGTCATGGCTCGAAAATCAAGATGAAGAAAAGAAGGAAAAAATAGGTGAGAACTCCAAGAACGATGACAAGGACGATGATGGCTCTCTTGGATCCATGTCCTTCCAGCAATTGCAGGACATCATCACCAACTCCATTAGAGCTCAATATGGAGGTCCTTCTCGTGATTCTCTCACCAACTCCAAACCCTACACCAAAAGAATCAACAGTCTAAGGATGTTGTTGGGATACCAGCCGCAAAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

201

Amino Acids

22.46

Weight (kDa)

9.96

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 58
AccB7I CCANNNNNTGG 1 cut(s) 97
AciI CCGC 2 cut(s) 69, 590
AclWI GGATC 4 cut(s) 66, 79, 441, 454
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 308
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 3 cut(s) 23, 125, 497
AluI AGCT 3 cut(s) 23, 125, 497
Alw21I GWGCWC 1 cut(s) 499
AlwI GGATC 4 cut(s) 66, 79, 441, 454
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 509
AsuHPI GGTGA 8 cut(s) 79, 148, 269, 307, 340, 413, 472, 520
AvaII GGWCC 1 cut(s) 509
AxyI CCTNAGG 1 cut(s) 170
BamHI GGATCC 2 cut(s) 71, 446
BanII GRGCYC 1 cut(s) 499
BauI CACGAG 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 428
BceAI ACGGC 1 cut(s) 306
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 161
BciVI GTATCC 1 cut(s) 575
BfaI CTAG 3 cut(s) 57, 78, 601
BfuI GTATCC 1 cut(s) 575
BisI GCNGC 2 cut(s) 67, 590
BlsI GCNGC 2 cut(s) 68, 591
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 509
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 2 cut(s) 73, 448
BmrFI CCNGG 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BsaAI YACGTR 1 cut(s) 311
BsaJI CCNNGG 3 cut(s) 159, 224, 249
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse21I CCTNAGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 3 cut(s) 159, 224, 249
BseGI GGATG 1 cut(s) 576
BseLI CCNNNNNNNGG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 499
BslI CCNNNNNNNGG 1 cut(s) 97
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 3 cut(s) 71, 233, 446
BspACI CCGC 2 cut(s) 69, 590
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 2 cut(s) 73, 448
BspPI GGATC 4 cut(s) 66, 79, 441, 454
BssECI CCNNGG 3 cut(s) 159, 224, 249
BssMI GATC 3 cut(s) 71, 233, 446
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 257, 563
Bst6I CTCTTC 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 170, 566
BstF5I GGATG 1 cut(s) 576
BstKTI GATC 3 cut(s) 74, 236, 449
BstMBI GATC 3 cut(s) 71, 233, 446
BstMCI CGRYCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 2 cut(s) 136, 229
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 78
BstX2I RGATCY 2 cut(s) 71, 446
BstYI RGATCY 2 cut(s) 71, 446
Bsu36I CCTNAGG 1 cut(s) 170
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 320
BtsCI GGATG 1 cut(s) 576
Cfr13I GGNCC 1 cut(s) 509
CviAII CATG 7 cut(s) 83, 97, 185, 268, 318, 360, 451
CviJI RGCY 9 cut(s) 5, 23, 125, 139, 223, 364, 438, 497, 589
CviKI_1 RGCY 9 cut(s) 5, 23, 125, 139, 223, 364, 438, 497, 589
DdeI CTNAG 2 cut(s) 170, 566
DpnI GATC 3 cut(s) 73, 235, 448
DpnII GATC 3 cut(s) 71, 233, 446
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 509
Eco53kI GAGCTC 1 cut(s) 497
Eco81I CCTNAGG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 497
EcoO109I RGGNCCY 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 7 cut(s) 86, 100, 188, 271, 321, 363, 454
FatI CATG 7 cut(s) 82, 96, 184, 267, 317, 359, 450
FauNDI CATATG 1 cut(s) 350
Fnu4HI GCNGC 2 cut(s) 67, 590
FokI GGATG 1 cut(s) 583
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 2 cut(s) 67, 590
FspBI CTAG 3 cut(s) 57, 78, 601
GluI GCNGC 2 cut(s) 67, 590
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 7 cut(s) 86, 100, 188, 271, 321, 363, 454
HinfI GANTC 5 cut(s) 260, 285, 331, 521, 555
HphI GGTGA 8 cut(s) 79, 148, 269, 307, 340, 413, 472, 520
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 2 cut(s) 374, 518
HpyAV CCTTC 4 cut(s) 141, 382, 466, 522
HpyCH4III ACNGT 2 cut(s) 257, 563
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 2 cut(s) 354, 469
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 229
HpyF3I CTNAG 2 cut(s) 170, 566
HpySE526I ACGT 1 cut(s) 310
Hsp92II CATG 7 cut(s) 86, 100, 188, 271, 321, 363, 454
Kzo9I GATC 3 cut(s) 71, 233, 446
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 6 cut(s) 146, 166, 173, 455, 473, 599
Lsp1109I GCAGC 1 cut(s) 78
MaeI CTAG 3 cut(s) 57, 78, 601
MaeII ACGT 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 73, 235, 448
MboI GATC 3 cut(s) 71, 233, 446
MboII GAAGA 3 cut(s) 46, 212, 392
MfeI CAATTG 1 cut(s) 464
MflI RGATCY 2 cut(s) 71, 446
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 1 cut(s) 464
MlyI GAGTC 1 cut(s) 294
MnlI CCTC 9 cut(s) 16, 64, 85, 150, 198, 201, 250, 259, 500
MspA1I CMGCKG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 136, 229
NdeI CATATG 1 cut(s) 350
NdeII GATC 3 cut(s) 71, 233, 446
NlaIII CATG 7 cut(s) 86, 100, 188, 271, 321, 363, 454
NlaIV GGNNCC 2 cut(s) 73, 448
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 188
PfeI GAWTC 4 cut(s) 260, 331, 521, 555
PflMI CCANNNNNTGG 1 cut(s) 97
PkrI GCNGC 2 cut(s) 68, 591
Ple19I CGATCG 1 cut(s) 236
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 509
Psp124BI GAGCTC 1 cut(s) 499
Psp5II RGGWCCY 1 cut(s) 509
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 73, 448
PspPI GGNCC 1 cut(s) 509
PspPPI RGGWCCY 1 cut(s) 509
PsuI RGATCY 2 cut(s) 71, 446
PvuI CGATCG 1 cut(s) 236
SacI GAGCTC 1 cut(s) 499
SatI GCNGC 2 cut(s) 67, 590
Sau3AI GATC 3 cut(s) 71, 233, 446
Sau96I GGNCC 1 cut(s) 509
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 499
SetI ASST 9 cut(s) 25, 56, 62, 127, 171, 313, 403, 499, 511
SinI GGWCC 1 cut(s) 509
Sse9I AATT 1 cut(s) 464
SsiI CCGC 2 cut(s) 69, 590
SspMI CTAG 3 cut(s) 57, 78, 601
SstI GAGCTC 1 cut(s) 499
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 257, 563
TaiI ACGT 1 cut(s) 313
TaqI TCGA 2 cut(s) 193, 366
TasI AATT 1 cut(s) 464
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 4 cut(s) 260, 331, 521, 555
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 5 cut(s) 109, 263, 314, 323, 393
Van91I CCANNNNNTGG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 509
XceI RCATGY 1 cut(s) 188
XspI CTAG 3 cut(s) 57, 78, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.