Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009186.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Reverse (-)

16285 .. 16896

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009186.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggcaaaagttcagcctacaacatttgtggctttgccttctaagccccgccaaccaatcatcaccttggaaagtttaggggcagggaaacatgtccctcgaagtgaagagagacaagctccaaatacaaaatcaagggaacggtcgttctcacctacctctgatgacaactcaagcaccagatcatatcatggaagtcctgatgctgaagaaaataacacttcggggatgcagtcagacagtgcgtctcacccttcagcaatgcaagtcatgatgactggggcaaccatgctcgaagagcaaatagctaatctgatggaggcggttcaaaagctcaccaataccgtcgaagaaaagtatatgcagattgctcaactttggagcaggctccggaaacaaaatgatgatgattttgctaaggttccatacaagaatgacaaagagaaacaagaagaaacttcaaagacaaatgacaaagtcagtgaaagtctacttgattatttgtccatccagcagctgcaagatatgatcaataactccatcaaagctcaatatggaggcccctctcgtgattctctcacattccaagccgtacatgaaaagagtggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

203

Amino Acids

22.69

Weight (kDa)

5.64

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	490
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	2 cut(s)	49, 323
AcuI	CTGAAG	2 cut(s)	228, 240
AfaI	GTAC	1 cut(s)	594
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	329, 462
AhdI	GACNNNNNGTC	1 cut(s)	244
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	5 cut(s)	119, 308, 334, 517, 548
AluI	AGCT	5 cut(s)	119, 308, 334, 517, 548
Alw26I	GTCTC	2 cut(s)	106, 252
AlwNI	CAGNNNCTG	1 cut(s)	517
Aor13HI	TCCGGA	1 cut(s)	390
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	2 cut(s)	514, 517
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	4 cut(s)	55, 144, 242, 328
BauI	CACGAG	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	504, 526
BccI	CCATC	3 cut(s)	310, 515, 548
BceAI	ACGGC	1 cut(s)	575
BclI	TGATCA	1 cut(s)	528
BcoDI	GTCTC	2 cut(s)	106, 252
BisI	GCNGC	2 cut(s)	515, 518
BlsI	GCNGC	2 cut(s)	516, 519
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	3 cut(s)	389, 423, 562
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	193, 219
BmuI	ACTGGG	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	390
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	2 cut(s)	234, 507
BseMI	GCAATG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	504, 526
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	561
BsiEI	CGRYCG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	2 cut(s)	106, 252
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	561
Bsp13I	TCCGGA	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	182, 528
BspACI	CCGC	2 cut(s)	49, 323
BspANI	GGCC	1 cut(s)	561
BspEI	TCCGGA	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	389, 423, 562
BspQI	GCTCTTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	182, 528
BssSI	CACGAG	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	144, 242, 346
Bst6I	CTCTTC	2 cut(s)	102, 291
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	42, 417
BstF5I	GGATG	2 cut(s)	234, 507
BstKTI	GATC	2 cut(s)	185, 531
BstMAI	GTCTC	2 cut(s)	106, 252
BstMBI	GATC	2 cut(s)	182, 528
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 298
BstNSI	RCATGY	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	504, 526
BsuRI	GGCC	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	234, 507
BtsIMutI	CAGTG	2 cut(s)	247, 487
Cac8I	GCNNGC	1 cut(s)	386
CaiI	CAGNNNCTG	1 cut(s)	517
CciI	TCATGA	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	560
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	593
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	5 cut(s)	92, 191, 271, 289, 596
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	2 cut(s)	42, 417
DpnI	GATC	2 cut(s)	184, 530
DpnII	GATC	2 cut(s)	182, 528
DriI	GACNNNNNGTC	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	102, 291
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	2 cut(s)	102, 291
Eco130I	CCWWGG	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	228, 240
EcoO109I	RGGNCCY	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	5 cut(s)	95, 194, 274, 292, 599
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	5 cut(s)	91, 190, 270, 288, 595
FauI	CCCGC	1 cut(s)	56
FbaI	TGATCA	1 cut(s)	528
FblI	GTMKAC	1 cut(s)	490
Fnu4HI	GCNGC	2 cut(s)	515, 518
FokI	GGATG	2 cut(s)	241, 494
Fsp4HI	GCNGC	2 cut(s)	515, 518
GluI	GCNGC	2 cut(s)	515, 518
HaeIII	GGCC	1 cut(s)	561
HapII	CCGG	1 cut(s)	391
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	5 cut(s)	95, 194, 274, 292, 599
HinfI	GANTC	1 cut(s)	572
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	4 cut(s)	55, 144, 242, 328
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	3 cut(s)	163, 238, 315
Hpy188III	TCNNGA	4 cut(s)	200, 271, 391, 569
Hpy8I	GTNNAC	1 cut(s)	491
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	48, 264
HpyCH4III	ACNGT	3 cut(s)	144, 242, 346
HpyCH4V	TGCA	4 cut(s)	232, 265, 364, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 298
HpyF3I	CTNAG	2 cut(s)	42, 417
Hsp92II	CATG	5 cut(s)	95, 194, 274, 292, 599
Kpn2I	TCCGGA	1 cut(s)	390
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	2 cut(s)	182, 528
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	3 cut(s)	124, 381, 393
LpnPI	CCDG	7 cut(s)	69, 193, 213, 264, 370, 404, 524
Lsp1109I	GCAGC	2 cut(s)	504, 526
LweI	GCATC	2 cut(s)	193, 219
MalI	GATC	2 cut(s)	184, 530
MboI	GATC	2 cut(s)	182, 528
MboII	GAAGA	5 cut(s)	119, 221, 308, 362, 464
MnlI	CCTC	5 cut(s)	108, 169, 313, 551, 574
MroI	TCCGGA	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	43, 298
NdeII	GATC	2 cut(s)	182, 528
NlaIII	CATG	5 cut(s)	95, 194, 274, 292, 599
NlaIV	GGNNCC	3 cut(s)	389, 423, 562
NspI	RCATGY	1 cut(s)	95
PagI	TCATGA	1 cut(s)	270
PciI	ACATGT	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	572
PflFI	GACNNNGTC	1 cut(s)	476
PkrI	GCNGC	2 cut(s)	516, 519
PscI	ACATGT	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	389, 423, 562
PspPI	GGNCC	1 cut(s)	560
PstNI	CAGNNNCTG	1 cut(s)	517
PsyI	GACNNNGTC	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
SapI	GCTCTTC	1 cut(s)	291
SatI	GCNGC	2 cut(s)	515, 518
Sau3AI	GATC	2 cut(s)	182, 528
Sau96I	GGNCC	1 cut(s)	560
SetI	ASST	9 cut(s)	68, 121, 157, 161, 310, 336, 423, 519, 550
SfaNI	GCATC	2 cut(s)	193, 219
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SsiI	CCGC	2 cut(s)	49, 323
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	3 cut(s)	144, 242, 346
TaqI	TCGA	3 cut(s)	100, 294, 348
TfiI	GAWTC	1 cut(s)	572
TscAI	CASTG	2 cut(s)	247, 487
TseI	GCWGC	2 cut(s)	514, 517
TspDTI	ATGAA	1 cut(s)	612
TspRI	CASTG	2 cut(s)	247, 487
Tth111I	GACNNNGTC	1 cut(s)	476
XceI	RCATGY	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.