Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009528.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Reverse (-)

20486 .. 20962

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009528.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggcttccaagaacactcaagtcatcccgaagaacaagtccaagacaatgacctcaaaatcgagcagcaactcaattggtcacgtcactcgaagcatggcaaaggttcagccaacaacatttgtggctttgccttctaagcctcgccaaccaatcattaccctggaaagtttaggggcagagaaacatgtccctcgaagtgaagagagacaagctccaaacacaaaaccaaaggaacggtcgttctcacttgccttagatggtcactcaagcacgggatcatacaaggggagttctgatgctgaagaagataacacttttgggatgcagtcaaacggtacgtctcacccctcagtaatgcaagtcatgatgactggggcagccacgctcgaggagcaggtagctaatctgatggaggcagttcaaaagctcaccaataccatcgaagaaaaagatatgcagattgctcgactttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 Retrotrans_gag

Protein Analysis

158

Amino Acids

17.15

Weight (kDa)

9.22

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AclWI	GGATC	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	340
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	425
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	162
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	215, 404, 430
AluI	AGCT	3 cut(s)	215, 404, 430
Alw26I	GTCTC	2 cut(s)	202, 348
AlwI	GGATC	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	389
ApeKI	GCWGC	2 cut(s)	66, 380
ArsI	GACNNNNNNTTYG	6 cut(s)	23, 55, 224, 256, 326, 358
AsuHPI	GGTGA	2 cut(s)	338, 424
AvaI	CYCGRG	1 cut(s)	389
BbvI	GCAGC	2 cut(s)	78, 392
BccI	CCATC	3 cut(s)	254, 406, 449
BcgI	CGANNNNNNTGC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	202, 348
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	2 cut(s)	67, 381
BlsI	GCNGC	2 cut(s)	68, 382
Bme1390I	CCNGG	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	289, 315
BmuI	ACTGGG	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpuEI	CTTGAG	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	24, 330
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	78, 392
Bsh1285I	CGRYCG	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	202, 348
BsmBI	CGTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	366
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	240, 338
Bst6I	CTCTTC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	138, 256, 352
BstF5I	GGATG	2 cut(s)	24, 330
BstKTI	GATC	1 cut(s)	281
BstMAI	GTCTC	2 cut(s)	202, 348
BstMBI	GATC	1 cut(s)	278
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 394
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	78, 392
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	24, 330
BveI	ACCTGC	1 cut(s)	388
CciI	TCATGA	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	339
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	3 cut(s)	97, 188, 367
CviJI	RGCY	8 cut(s)	5, 112, 128, 142, 215, 383, 404, 430
CviKI_1	RGCY	8 cut(s)	5, 112, 128, 142, 215, 383, 404, 430
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	3 cut(s)	138, 256, 352
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	348
FaeI	CATG	3 cut(s)	100, 191, 370
FaiI	YATR	5 cut(s)	98, 189, 283, 368, 458
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	96, 187, 366
Fnu4HI	GCNGC	2 cut(s)	67, 381
FokI	GGATG	2 cut(s)	11, 337
Fsp4HI	GCNGC	2 cut(s)	67, 381
GluI	GCNGC	2 cut(s)	67, 381
Hin1II	CATG	3 cut(s)	100, 191, 370
HphI	GGTGA	2 cut(s)	338, 424
Hpy188I	TCNGA	2 cut(s)	298, 411
Hpy188III	TCNNGA	2 cut(s)	28, 367
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	2 cut(s)	240, 338
HpyCH4IV	ACGT	2 cut(s)	84, 341
HpyCH4V	TGCA	3 cut(s)	328, 361, 460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 394
HpyF3I	CTNAG	3 cut(s)	138, 256, 352
HpySE526I	ACGT	2 cut(s)	84, 341
Hsp92II	CATG	3 cut(s)	100, 191, 370
Kzo9I	GATC	1 cut(s)	278
LmnI	GCTCC	2 cut(s)	220, 394
LpnPI	CCDG	4 cut(s)	149, 176, 360, 383
Lsp1109I	GCAGC	2 cut(s)	78, 392
LweI	GCATC	2 cut(s)	289, 315
MaeII	ACGT	2 cut(s)	84, 341
MaeIII	GTNAC	3 cut(s)	80, 85, 263
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	5 cut(s)	43, 215, 317, 320, 458
MfeI	CAATTG	1 cut(s)	75
MluCI	AATT	1 cut(s)	75
MnlI	CCTC	6 cut(s)	64, 153, 204, 361, 385, 409
MspR9I	CCNGG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	139, 394
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	3 cut(s)	100, 191, 370
NmuCI	GTSAC	3 cut(s)	80, 85, 263
NspI	RCATGY	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	389
PagI	TCATGA	1 cut(s)	366
PciI	ACATGT	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	68, 382
PscI	ACATGT	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspXI	VCTCGAGB	1 cut(s)	389
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SatI	GCNGC	2 cut(s)	67, 381
Sau3AI	GATC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	8 cut(s)	56, 87, 108, 217, 344, 402, 406, 432
SfaNI	GCATC	2 cut(s)	289, 315
Sfr274I	CTCGAG	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	3 cut(s)	18, 268, 389
SmoI	CTYRAG	3 cut(s)	18, 268, 389
Sse9I	AATT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	240, 338
TaiI	ACGT	2 cut(s)	87, 344
TaqI	TCGA	6 cut(s)	62, 91, 196, 390, 444, 469
TasI	AATT	1 cut(s)	75
TseFI	GTSAC	3 cut(s)	80, 85, 263
TseI	GCWGC	2 cut(s)	66, 380
Tsp45I	GTSAC	3 cut(s)	80, 85, 263
XceI	RCATGY	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.