Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001307.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Forward (+)

122610 .. 123323

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001307.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggcttccaagaacactcaagtcatcccaaaaaacaagtccaagccaacaaccttgaaatcaagcagcaactcatctggtcacgtcacccgaagcatggcaaaagttcagcctacaacatttgtggctttgccttctaagcctcgccaaccaatcatcaaactagaaagtttaggggcaaggaaacatgtccctagaagtgaagagagacaagctccaaatacaaaatccagggaacggtcgttctcacctgcctctgatgacaactcaagcatcaaatcatataatggaagtcctgatgctaaagaaaataacacttcggggatgcagtcagacagtgcctctcactcctcagcaatgcaagtcatgatgatgggggcaaccacgctcgaagagcaaatagctaatctgatggaggcggttcaaaagctcaccaataccgtcgaagaaaaggatatgcagactgctcaactttggagcaggctcgagaagaaaaatgatgaggattctgataaggttccatacaagaatgacaaaaagaaacaagaagaaactttaaagacaaatgacaaagacagtgaaagtctacttggttctctgtctgtccagcagctgcaggacatgatcaataactccatcagagctcaatatggaggcccttctcgtgattctctcacatactttaagccgtacacaaaaagagtggatatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

237

Amino Acids

26.38

Weight (kDa)

9.4

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	586
AciI	CCGC	1 cut(s)	419
AfaI	GTAC	1 cut(s)	692
AfiI	CCNNNNNNNGG	2 cut(s)	97, 237
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	58, 425
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	2 cut(s)	573, 605
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	5 cut(s)	215, 404, 430, 613, 644
AluI	AGCT	5 cut(s)	215, 404, 430, 613, 644
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	1 cut(s)	202
AlwNI	CAGNNNCTG	1 cut(s)	613
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	1 cut(s)	655
ApeKI	GCWGC	3 cut(s)	66, 610, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	3 cut(s)	79, 240, 424
AvaI	CYCGRG	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	646
BauI	CACGAG	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	646
BbvCI	CCTCAGC	1 cut(s)	352
BbvI	GCAGC	3 cut(s)	78, 600, 622
BccI	CCATC	3 cut(s)	367, 406, 644
BceAI	ACGGC	1 cut(s)	673
BciT130I	CCWGG	1 cut(s)	232
BclI	TGATCA	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	2 cut(s)	164, 195
BfmI	CTRYAG	1 cut(s)	614
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	3 cut(s)	67, 611, 614
BlsI	GCNGC	3 cut(s)	68, 612, 615
Bme1390I	CCNGG	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	485
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	3 cut(s)	282, 289, 315
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
Bpu10I	CCTNAGC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 237
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	24, 330
BseLI	CCNNNNNNNGG	2 cut(s)	97, 237
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	3 cut(s)	78, 600, 622
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	657
BsiEI	CGRYCG	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	646
BsiHKCI	CYCGRG	1 cut(s)	485
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	97, 237
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	657
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	1 cut(s)	624
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	1 cut(s)	657
BspCNI	CTCAG	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	618
BspMI	ACCTGC	1 cut(s)	259
BspQI	GCTCTTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	624
BssSI	CACGAG	1 cut(s)	663
Bst2BI	CACGAG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	4 cut(s)	240, 338, 442, 578
Bst6I	CTCTTC	2 cut(s)	198, 387
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	2 cut(s)	138, 352
BstF5I	GGATG	2 cut(s)	24, 330
BstKTI	GATC	1 cut(s)	627
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	624
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 394
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	614
BstV1I	GCAGC	3 cut(s)	78, 600, 622
BsuRI	GGCC	1 cut(s)	657
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	24, 330
BtsIMutI	CAGTG	2 cut(s)	343, 583
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	482
CaiI	CAGNNNCTG	1 cut(s)	613
CciI	TCATGA	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	691
CspCI	CAANNNNNGTGG	3 cut(s)	105, 140, 684
CviAII	CATG	4 cut(s)	97, 188, 367, 622
CviQI	GTAC	1 cut(s)	691
DdeI	CTNAG	2 cut(s)	138, 352
DpnI	GATC	1 cut(s)	626
DpnII	GATC	1 cut(s)	624
DraI	TTTAAA	1 cut(s)	558
Eam1104I	CTCTTC	2 cut(s)	198, 387
EarI	CTCTTC	2 cut(s)	198, 387
Ecl136II	GAGCTC	1 cut(s)	644
Eco24I	GRGCYC	1 cut(s)	646
Eco53kI	GAGCTC	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	646
FaeI	CATG	4 cut(s)	100, 191, 370, 625
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	4 cut(s)	96, 187, 366, 621
FbaI	TGATCA	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	586
Fnu4HI	GCNGC	3 cut(s)	67, 611, 614
FokI	GGATG	2 cut(s)	11, 337
FriOI	GRGCYC	1 cut(s)	646
Fsp4HI	GCNGC	3 cut(s)	67, 611, 614
FspBI	CTAG	2 cut(s)	164, 195
GluI	GCNGC	3 cut(s)	67, 611, 614
HaeIII	GGCC	1 cut(s)	657
Hin1II	CATG	4 cut(s)	100, 191, 370, 625
HinfI	GANTC	2 cut(s)	506, 668
HphI	GGTGA	3 cut(s)	79, 240, 424
Hpy166II	GTNNAC	2 cut(s)	587, 693
Hpy188I	TCNGA	5 cut(s)	259, 334, 411, 511, 641
Hpy188III	TCNNGA	4 cut(s)	296, 367, 487, 665
Hpy8I	GTNNAC	2 cut(s)	587, 693
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	2 cut(s)	144, 669
HpyCH4III	ACNGT	4 cut(s)	240, 338, 442, 578
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	328, 361, 460, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 394
HpyF3I	CTNAG	2 cut(s)	138, 352
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	100, 191, 370, 625
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	1 cut(s)	624
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	2 cut(s)	220, 477
LpnPI	CCDG	8 cut(s)	63, 217, 244, 264, 309, 466, 602, 620
Lsp1109I	GCAGC	3 cut(s)	78, 600, 622
LweI	GCATC	3 cut(s)	282, 289, 315
MaeI	CTAG	2 cut(s)	164, 195
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	80, 85
MalI	GATC	1 cut(s)	626
MboI	GATC	1 cut(s)	624
MboII	GAAGA	5 cut(s)	215, 404, 458, 502, 560
MhlI	GDGCHC	1 cut(s)	646
MnlI	CCTC	7 cut(s)	153, 265, 352, 361, 409, 496, 647
MseI	TTAA	2 cut(s)	557, 684
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	613
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	139, 394
NdeII	GATC	1 cut(s)	624
NlaIII	CATG	4 cut(s)	100, 191, 370, 625
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	2 cut(s)	80, 85
NspI	RCATGY	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	485
PagI	TCATGA	1 cut(s)	366
PaqCI	CACCTGC	1 cut(s)	259
PciI	ACATGT	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	506, 668
PkrI	GCNGC	3 cut(s)	68, 612, 615
PscI	ACATGT	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	646
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	618
PstNI	CAGNNNCTG	1 cut(s)	613
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	1 cut(s)	692
RsaNI	GTAC	1 cut(s)	691
RseI	CAYNNNNRTG	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	646
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	557, 684
SatI	GCNGC	3 cut(s)	67, 611, 614
Sau3AI	GATC	1 cut(s)	624
Sau96I	GGNCC	1 cut(s)	656
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	646
SetI	ASST	9 cut(s)	56, 87, 217, 253, 406, 432, 519, 615, 646
SfaNI	GCATC	3 cut(s)	282, 289, 315
SfcI	CTRYAG	1 cut(s)	614
Sfr274I	CTCGAG	1 cut(s)	485
SlaI	CTCGAG	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	3 cut(s)	18, 268, 485
SmoI	CTYRAG	3 cut(s)	18, 268, 485
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	2 cut(s)	164, 195
SstI	GAGCTC	1 cut(s)	646
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	4 cut(s)	240, 338, 442, 578
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	390, 444, 486
TfiI	GAWTC	2 cut(s)	506, 668
Tru1I	TTAA	2 cut(s)	557, 684
Tru9I	TTAA	2 cut(s)	557, 684
TscAI	CASTG	2 cut(s)	343, 583
TseFI	GTSAC	2 cut(s)	80, 85
TseI	GCWGC	3 cut(s)	66, 610, 613
Tsp45I	GTSAC	2 cut(s)	80, 85
TspRI	CASTG	2 cut(s)	343, 583
XceI	RCATGY	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	485
XmiI	GTMKAC	1 cut(s)	586
XspI	CTAG	2 cut(s)	164, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.