Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001107.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Reverse (-)

18460 .. 19011

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001107.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggcaaaggttcagcctacaacatttgtggcttttccgtctaagcctcgccaaccaatcatcaccctggaaagtttaggggcagggaaacatgtccctcgaagtgaagagagacaagctccaaatacaaaatcaagatcatatcatggaagtcctgatgctgaagaaaataacacttctgggatacagtcagacggtgcacctcacccctcagcaatgcaagtcatgatgattggggcagctacgctcgaagagcagatagctaatctaatggaggcggttcaaatgctcaccaatatcgtcaaagaaaaggatatgcagattgctcaactttggagcaggctcgagaaacaaaatgatgaggattctgctaggattccatataaagatgacaaagacaaacaaggagaaactgcaaaggcaaatgacaaggacaatgaaagcctacttagttctttgtccgtccagcagctgcaagacatgatcaacaactccattagagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

168

Amino Acids

18.58

Weight (kDa)

5.24

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	5 cut(s)	119, 242, 263, 472, 503
AluI	AGCT	5 cut(s)	119, 242, 263, 472, 503
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	106
Alw44I	GTGCAC	1 cut(s)	198
AlwNI	CAGNNNCTG	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	344
ApaLI	GTGCAC	1 cut(s)	198
ApeKI	GCWGC	3 cut(s)	239, 469, 472
AsuHPI	GGTGA	3 cut(s)	55, 197, 283
AvaI	CYCGRG	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	202
BbvCI	CCTCAGC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	251, 459, 481
BciT130I	CCWGG	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	177
BisI	GCNGC	3 cut(s)	240, 470, 473
BlsI	GCNGC	3 cut(s)	241, 471, 474
Bme1390I	CCNGG	1 cut(s)	68
BmeT110I	CYCGRG	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
Bpu10I	CCTNAGC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	3 cut(s)	251, 459, 481
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	137, 483
BspACI	CCGC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	224
BspHI	TCATGA	1 cut(s)	225
BspQI	GCTCTTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	137, 483
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	189, 197
Bst6I	CTCTTC	2 cut(s)	102, 246
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	3 cut(s)	42, 211, 449
BstKTI	GATC	2 cut(s)	140, 486
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	137, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	251, 459, 481
BsuI	GTATCC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	341
CaiI	CAGNNNCTG	1 cut(s)	472
CciI	TCATGA	1 cut(s)	225
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	4 cut(s)	92, 146, 226, 481
DdeI	CTNAG	3 cut(s)	42, 211, 449
DpnI	GATC	2 cut(s)	139, 485
DpnII	GATC	2 cut(s)	137, 483
Eam1104I	CTCTTC	2 cut(s)	102, 246
EarI	CTCTTC	2 cut(s)	102, 246
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	95, 149, 229, 484
FaiI	YATR	8 cut(s)	93, 142, 147, 227, 317, 382, 384, 482
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	4 cut(s)	91, 145, 225, 480
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	240, 470, 473
Fsp4HI	GCNGC	3 cut(s)	240, 470, 473
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	3 cut(s)	240, 470, 473
Hin1II	CATG	4 cut(s)	95, 149, 229, 484
HinfI	GANTC	2 cut(s)	365, 376
HphI	GGTGA	3 cut(s)	55, 197, 283
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	4 cut(s)	135, 155, 226, 346
Hpy8I	GTNNAC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	189, 197
HpyCH4V	TGCA	5 cut(s)	200, 220, 319, 416, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	3 cut(s)	42, 211, 449
Hsp92II	CATG	4 cut(s)	95, 149, 229, 484
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	137, 483
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	124, 336
LpnPI	CCDG	7 cut(s)	53, 69, 80, 165, 168, 325, 479
Lsp1109I	GCAGC	3 cut(s)	251, 459, 481
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	372
MalI	GATC	2 cut(s)	139, 485
MboI	GATC	2 cut(s)	137, 483
MboII	GAAGA	3 cut(s)	119, 176, 263
MhlI	GDGCHC	1 cut(s)	202
MnlI	CCTC	6 cut(s)	57, 108, 213, 220, 268, 355
MseI	TTAA	1 cut(s)	505
MspA1I	CMGCKG	1 cut(s)	472
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeII	GATC	2 cut(s)	137, 483
NlaIII	CATG	4 cut(s)	95, 149, 229, 484
NspI	RCATGY	1 cut(s)	95
PaeR7I	CTCGAG	1 cut(s)	344
PagI	TCATGA	1 cut(s)	225
PciI	ACATGT	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	365, 376
PkrI	GCNGC	3 cut(s)	241, 471, 474
PscI	ACATGT	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	472
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	3 cut(s)	240, 470, 473
Sau3AI	GATC	2 cut(s)	137, 483
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	7 cut(s)	12, 121, 205, 244, 265, 474, 505
SfaNI	GCATC	1 cut(s)	148
Sfr274I	CTCGAG	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	189, 197
TaqI	TCGA	3 cut(s)	100, 249, 345
TfiI	GAWTC	2 cut(s)	365, 376
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TseI	GCWGC	3 cut(s)	239, 469, 472
TspDTI	ATGAA	1 cut(s)	453
TspGWI	ACGGA	2 cut(s)	27, 451
VneI	GTGCAC	1 cut(s)	198
XceI	RCATGY	1 cut(s)	95
XhoI	CTCGAG	1 cut(s)	344
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.