Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000395.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Forward (+)

232597 .. 233058

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000395.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atggcttccaagaacactcaagtcatcccgaagaacaagtccaagacaacgacctcaaaatcgagcagcaactcatcgggtcacgtcactcgaagcatggcaaagggtcagcctacaacatttgtggctttgccttctaagcctcgccaaccaatcatcaccgtggaaagtttgggggcagcgaagcatgtccctcgaagtgaagagagacaagctccaaatacaaaatcaagggagcgatcgttctcacctgcctctgatgacaattcaagccccggatcataccatggaagtcctgatcctgaagaaaataacacttctagggtgcggtcagacagtgcgtctcacctctcagcaatgcaagtcatgatgactggggcaaccatgctcgaagagcaggtagctaatctgatggaggcggttcaaaaactcactaataccgtcgaggaaaaagatatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

153

Amino Acids

16.52

Weight (kDa)

9.3

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	2 cut(s)	259, 388
AciI	CCGC	2 cut(s)	328, 419
AclWI	GGATC	2 cut(s)	286, 293
AcuI	CTGAAG	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	270, 425
AhdI	GACNNNNNGTC	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	85
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	2 cut(s)	215, 404
AluI	AGCT	2 cut(s)	215, 404
Alw26I	GTCTC	2 cut(s)	202, 348
AlwI	GGATC	2 cut(s)	286, 293
ApeKI	GCWGC	2 cut(s)	66, 179
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	151, 240, 338
BbvI	GCAGC	2 cut(s)	78, 191
BccI	CCATC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	202, 348
BfaI	CTAG	1 cut(s)	321
BfuAI	ACCTGC	2 cut(s)	259, 388
BisI	GCNGC	2 cut(s)	67, 180
BlsI	GCNGC	2 cut(s)	68, 181
Bme1390I	CCNGG	1 cut(s)	276
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmgBI	CACGTC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	384
BmuI	ACTGGG	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	162, 274, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	162, 274, 286
BseGI	GGATG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	78, 191
Bsh1285I	CGRYCG	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	202, 348
BsmBI	CGTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	239, 278, 298
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	2 cut(s)	328, 419
BspCNI	CTCAG	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	366
BspMI	ACCTGC	2 cut(s)	259, 388
BspPI	GGATC	2 cut(s)	286, 293
BspQI	GCTCTTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	3 cut(s)	162, 274, 286
BssMI	GATC	3 cut(s)	239, 278, 298
BssT1I	CCWWGG	1 cut(s)	286
Bst4CI	ACNGT	3 cut(s)	163, 338, 442
Bst6I	CTCTTC	2 cut(s)	198, 387
BstDEI	CTNAG	2 cut(s)	138, 352
BstDSI	CCRYGG	2 cut(s)	162, 286
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	3 cut(s)	242, 281, 301
BstMAI	GTCTC	2 cut(s)	202, 348
BstMBI	GATC	3 cut(s)	239, 278, 298
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 394
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	78, 191
BtgI	CCRYGG	2 cut(s)	162, 286
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	343
BveI	ACCTGC	2 cut(s)	259, 388
CciI	TCATGA	1 cut(s)	366
CseI	GACGC	1 cut(s)	330
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	5 cut(s)	97, 188, 287, 367, 385
CviJI	RGCY	7 cut(s)	5, 112, 128, 142, 215, 273, 404
CviKI_1	RGCY	7 cut(s)	5, 112, 128, 142, 215, 273, 404
DdeI	CTNAG	2 cut(s)	138, 352
DpnI	GATC	3 cut(s)	241, 280, 300
DpnII	GATC	3 cut(s)	239, 278, 298
DriI	GACNNNNNGTC	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	198, 387
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EarI	CTCTTC	2 cut(s)	198, 387
Eco130I	CCWWGG	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
Esp3I	CGTCTC	1 cut(s)	348
FaeI	CATG	5 cut(s)	100, 191, 290, 370, 388
FaiI	YATR	7 cut(s)	98, 189, 283, 288, 368, 386, 458
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	5 cut(s)	96, 187, 286, 366, 384
Fnu4HI	GCNGC	2 cut(s)	67, 180
FokI	GGATG	1 cut(s)	11
Fsp4HI	GCNGC	2 cut(s)	67, 180
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	2 cut(s)	67, 180
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	330
Hin1II	CATG	5 cut(s)	100, 191, 290, 370, 388
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	151, 240, 338
Hpy188I	TCNGA	3 cut(s)	259, 334, 411
Hpy188III	TCNNGA	4 cut(s)	28, 296, 302, 367
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	3 cut(s)	163, 338, 442
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 394
HpyF3I	CTNAG	2 cut(s)	138, 352
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	100, 191, 290, 370, 388
Kzo9I	GATC	3 cut(s)	239, 278, 298
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	2 cut(s)	220, 235
LpnPI	CCDG	6 cut(s)	264, 289, 309, 315, 360, 383
Lsp1109I	GCAGC	2 cut(s)	78, 191
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	80, 85
MalI	GATC	3 cut(s)	241, 280, 300
MboI	GATC	3 cut(s)	239, 278, 298
MboII	GAAGA	4 cut(s)	43, 215, 317, 404
MluCI	AATT	1 cut(s)	265
MnlI	CCTC	7 cut(s)	64, 153, 204, 265, 359, 409, 439
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	139, 394
NciI	CCSGG	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	3 cut(s)	239, 278, 298
NlaIII	CATG	5 cut(s)	100, 191, 290, 370, 388
NmuCI	GTSAC	2 cut(s)	80, 85
NspI	RCATGY	1 cut(s)	191
PagI	TCATGA	1 cut(s)	366
PaqCI	CACCTGC	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	68, 181
Ple19I	CGATCG	1 cut(s)	242
PvuI	CGATCG	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	387
SatI	GCNGC	2 cut(s)	67, 180
Sau3AI	GATC	3 cut(s)	239, 278, 298
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	7 cut(s)	56, 87, 217, 253, 351, 402, 406
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	2 cut(s)	328, 419
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	3 cut(s)	163, 338, 442
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	5 cut(s)	62, 91, 196, 390, 444
TasI	AATT	1 cut(s)	265
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	2 cut(s)	80, 85
TseI	GCWGC	2 cut(s)	66, 179
Tsp45I	GTSAC	2 cut(s)	80, 85
TspRI	CASTG	1 cut(s)	343
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.