Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Reverse (-)

25175835 .. 25176596

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22272.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGAGAACTCAACCCACGACATTTGTGGCTCTACCTTCAAAGCTTCGACAACCAATTATCACCTTTGAAAGTCTAGGGGCAAGCCAACATGTCTCTCGAAGCGAAGAGAGAGAGACTCCAAAGAAATCAAGGGAGCGATCATTCTCACCCGCTTACTCTGATGGTGAATCAAGCACGGCTTCGCATCATGGGAGCCCCAATGGAGATGAAGACCATACTTATGGCCTGCCATCAAGTAGCTCGTCTCACCCTATCAACATGCAAGTCATGGTGACCGGAGCAGCCACCATTGAAGAGCAAATAGCTAATCTGATGGGAGCAGTCGAGAAGCTCACCAAAACGGTGGAAGAAAAAGACCTACAAATTGCTGAGCTCTGGTCCAAACTTCAAATCCAAGACGAAGAAAAAGAAGAAAAGAGGGAAAAAGAAGAAGAGAATTCTCATAACAATGACAAGAACAACGATGACTCACTTGCATCCATGTCGTTCCAGCAGTTGCAAGATATCATCACCAACTCCATCAGAGCTCAATATGGAGGCCTTTCTCGTGATTCTCTCGTGTACTCTAAACCCTACACCAAGAGGATTGACAATTTAAGGATGCCGTTCGGATATCAGCCACCGAAGTTCCAACAATTCGAGAGAAAAGGAAACCCGAAGCAGCATGTTGCACATTTCATAGACTTGCAACAACGCAGGGACAGAAGGCGACCATTTGGTCAAGCAGTTCGTTCGCTCTTTGAAGGGAAACGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

254

Amino Acids

28.86

Weight (kDa)

7.12

Isoelectric Point (pI)

69.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	720
AciI	CCGC	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	439
AfaI	GTAC	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	5 cut(s)	42, 71, 296, 392, 746
AluBI	AGCT	6 cut(s)	46, 243, 308, 334, 376, 530
AluI	AGCT	6 cut(s)	46, 243, 308, 334, 376, 530
Alw21I	GWGCWC	2 cut(s)	378, 532
Alw26I	GTCTC	3 cut(s)	100, 110, 252
AoxI	GGCC	2 cut(s)	226, 541
ApeKI	GCWGC	2 cut(s)	284, 664
ApoI	RAATTY	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	7 cut(s)	55, 141, 179, 242, 286, 328, 505
AvaII	GGWCC	1 cut(s)	381
BanII	GRGCYC	3 cut(s)	200, 378, 532
BauI	CACGAG	2 cut(s)	549, 560
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	378, 532
BbvI	GCAGC	2 cut(s)	296, 676
BccI	CCATC	4 cut(s)	158, 241, 310, 530
BceAI	ACGGC	2 cut(s)	195, 592
BcgI	CGANNNNNNTGC	4 cut(s)	468, 502, 717, 751
BcoDI	GTCTC	3 cut(s)	100, 110, 252
BfaI	CTAG	1 cut(s)	77
BisI	GCNGC	2 cut(s)	285, 665
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	2 cut(s)	286, 666
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	197
BmsI	GCATC	3 cut(s)	196, 488, 594
BpiI	GAAGAC	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
Bpu1102I	GCTNAGC	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	278
BseGI	GGATG	2 cut(s)	479, 609
BseMII	CTCAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	296, 676
BshFI	GGCC	2 cut(s)	228, 543
BsiHKAI	GWGCWC	2 cut(s)	378, 532
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	716
BsmAI	GTCTC	3 cut(s)	100, 110, 252
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	716
BsnI	GGCC	2 cut(s)	228, 543
Bsp1286I	GDGCHC	3 cut(s)	200, 378, 532
Bsp143I	GATC	1 cut(s)	140
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	228, 543
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	291
BssMI	GATC	1 cut(s)	140
BssSI	CACGAG	2 cut(s)	549, 560
Bst2BI	CACGAG	2 cut(s)	549, 560
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	3 cut(s)	102, 291, 429
BstC8I	GCNNGC	2 cut(s)	85, 230
BstDEI	CTNAG	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	274
BstF5I	GGATG	2 cut(s)	479, 609
BstKTI	GATC	1 cut(s)	143
BstMAI	GTCTC	3 cut(s)	100, 110, 252
BstMBI	GATC	1 cut(s)	140
BstNSI	RCATGY	3 cut(s)	95, 265, 671
BstPI	GGTNACC	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	296, 676
BstV2I	GAAGAC	1 cut(s)	219
BstXI	CCANNNNNNTGG	2 cut(s)	224, 346
BsuRI	GGCC	2 cut(s)	228, 543
BtsCI	GGATG	2 cut(s)	479, 609
Cac8I	GCNNGC	2 cut(s)	85, 230
Cfr13I	GGNCC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	565
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	6 cut(s)	92, 191, 262, 271, 484, 668
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
DrdI	GACNNNNNNGTC	1 cut(s)	720
DseDI	GACNNNNNNGTC	1 cut(s)	720
Eam1104I	CTCTTC	3 cut(s)	102, 291, 429
EarI	CTCTTC	3 cut(s)	102, 291, 429
Ecl136II	GAGCTC	2 cut(s)	376, 530
Eco147I	AGGCCT	1 cut(s)	543
Eco24I	GRGCYC	3 cut(s)	200, 378, 532
Eco32I	GATATC	2 cut(s)	508, 617
Eco47I	GGWCC	1 cut(s)	381
Eco53kI	GAGCTC	2 cut(s)	376, 530
Eco91I	GGTNACC	1 cut(s)	274
EcoICRI	GAGCTC	2 cut(s)	376, 530
EcoO65I	GGTNACC	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	439
EcoRV	GATATC	2 cut(s)	508, 617
EcoT38I	GRGCYC	3 cut(s)	200, 378, 532
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	6 cut(s)	95, 194, 265, 274, 487, 671
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	6 cut(s)	91, 190, 261, 270, 483, 667
FauI	CCCGC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	285, 665
FokI	GGATG	2 cut(s)	466, 616
FriOI	GRGCYC	3 cut(s)	200, 378, 532
Fsp4HI	GCNGC	2 cut(s)	285, 665
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	2 cut(s)	285, 665
HaeIII	GGCC	2 cut(s)	228, 543
HapII	CCGG	1 cut(s)	279
Hin1II	CATG	6 cut(s)	95, 194, 265, 274, 487, 671
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	4 cut(s)	118, 170, 470, 554
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	7 cut(s)	55, 141, 179, 242, 286, 328, 505
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	4 cut(s)	163, 315, 527, 614
Hpy188III	TCNNGA	4 cut(s)	99, 328, 551, 643
Hpy8I	GTNNAC	1 cut(s)	565
HpyAV	CCTTC	3 cut(s)	48, 702, 740
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	5 cut(s)	265, 479, 502, 674, 691
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	6 cut(s)	95, 194, 265, 274, 487, 671
Kzo9I	GATC	1 cut(s)	140
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	4 cut(s)	136, 195, 281, 320
LpnPI	CCDG	5 cut(s)	242, 292, 364, 506, 685
Lsp1109I	GCAGC	2 cut(s)	296, 676
LweI	GCATC	3 cut(s)	196, 488, 594
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	8 cut(s)	119, 224, 308, 362, 416, 425, 443, 446
MhlI	GDGCHC	3 cut(s)	200, 378, 532
MluCI	AATT	5 cut(s)	57, 366, 439, 595, 638
MlyI	GAGTC	2 cut(s)	112, 464
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	3 cut(s)	414, 533, 579
MseI	TTAA	1 cut(s)	599
MslI	CAYNNNNRTG	2 cut(s)	222, 450
MspI	CCGG	1 cut(s)	279
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	6 cut(s)	95, 194, 265, 274, 487, 671
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	3 cut(s)	95, 265, 671
PceI	AGGCCT	1 cut(s)	543
PciI	ACATGT	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	170, 554
PkrI	GCNGC	2 cut(s)	286, 666
PleI	GAGTC	2 cut(s)	112, 464
PpsI	GAGTC	2 cut(s)	112, 464
PscI	ACATGT	1 cut(s)	91
Psp124BI	GAGCTC	2 cut(s)	378, 532
PspEI	GGTNACC	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	381
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	2 cut(s)	222, 450
SacI	GAGCTC	2 cut(s)	378, 532
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	2 cut(s)	285, 665
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	1 cut(s)	381
SchI	GAGTC	2 cut(s)	112, 464
SduI	GDGCHC	3 cut(s)	200, 378, 532
SetI	ASST	9 cut(s)	40, 48, 68, 245, 310, 336, 363, 378, 532
SfaNI	GCATC	3 cut(s)	196, 488, 594
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	2 cut(s)	222, 450
Sse9I	AATT	5 cut(s)	57, 366, 439, 595, 638
SseBI	AGGCCT	1 cut(s)	543
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	77
SstI	GAGCTC	2 cut(s)	378, 532
StuI	AGGCCT	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	4 cut(s)	49, 100, 327, 642
TasI	AATT	5 cut(s)	57, 366, 439, 595, 638
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	2 cut(s)	170, 554
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	284, 664
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	225, 670
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	3 cut(s)	95, 265, 671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.