Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000670.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Reverse (-)

94867 .. 95676

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000670.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggcggcttccaagaacactcaagtcatcctgaagaacaagtccaagacaacgacctcaaaatcgagcagcagctcattgggtcacgttactcgaagcatggcaaaggttcagcctacaacatttgtggctttggcttctaagcctcgccaaccaatcatcaccctgaaaattttaggggcaaggaagcatgcccctcgaagtgaagagagacaagctccaaatacaaaatcaagggagcggtcattctcacctgcctctgatgacaattccagcaccagatcataccatggaagtcctgatcctgaagaaaataacacttctgggatgcggttagacagtgtgtctcacctctcagtaatgcaagtcatgatgactggggcaaccatgctcgaagagcaggtagctaatctgatggaggcggttcaaaagctcactaataccgtcgaagaaaaagatatgcagattgctcaactttggagcaggctcgagaaacagaacgatgaggattctgctaggattccatacaagaatgacaaagagaaacaagaagaaacttcaaagacaaatgacaaagaaagtgaaagtccacttggttctttgtccgtccagcagctgcaagacatgatcaacaactccattagagctcaatatggaggtacctctcgtgtttctctcacatactccaagccatacacaaaaagagtggatagcctgaggatgccatatgggtaccagccgcccaagtttcagcaatttgaggggaagggcaatccaaaacaacatattgctcattttgtcgagacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

269

Amino Acids

30.11

Weight (kDa)

9.48

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	2 cut(s)	262, 391
Acc65I	GGTACC	2 cut(s)	659, 732
AccB1I	GGYRCC	2 cut(s)	659, 732
AccBSI	CCGCTC	1 cut(s)	241
AciI	CCGC	5 cut(s)	5, 241, 331, 422, 740
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	171
AcuI	CTGAAG	2 cut(s)	53, 327
AfaI	GTAC	2 cut(s)	661, 734
AgsI	TTSAA	2 cut(s)	428, 561
AhdI	GACNNNNNGTC	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AluBI	AGCT	6 cut(s)	75, 218, 407, 433, 616, 647
AluI	AGCT	6 cut(s)	75, 218, 407, 433, 616, 647
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	3 cut(s)	205, 351, 797
AlwI	GGATC	1 cut(s)	296
AlwNI	CAGNNNCTG	1 cut(s)	616
Ama87I	CYCGRG	1 cut(s)	488
ApeKI	GCWGC	4 cut(s)	69, 72, 613, 616
ApoI	RAATTY	1 cut(s)	171
Asp718I	GGTACC	2 cut(s)	659, 732
AsuHPI	GGTGA	3 cut(s)	154, 243, 341
AvaI	CYCGRG	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	716
BanI	GGYRCC	2 cut(s)	659, 732
BanII	GRGCYC	1 cut(s)	649
BauI	CACGAG	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	4 cut(s)	81, 84, 603, 625
BccI	CCATC	1 cut(s)	409
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BclI	TGATCA	1 cut(s)	627
BcoDI	GTCTC	3 cut(s)	205, 351, 797
BfaI	CTAG	1 cut(s)	516
BfuAI	ACCTGC	2 cut(s)	262, 391
BisI	GCNGC	6 cut(s)	6, 70, 73, 614, 617, 740
BlsI	GCNGC	6 cut(s)	7, 71, 74, 615, 618, 741
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	488
BmiI	GGNNCC	2 cut(s)	661, 734
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	2 cut(s)	318, 711
BmuI	ACTGGG	1 cut(s)	387
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpuEI	CTTGAG	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	382
Bse21I	CCTNAGG	1 cut(s)	716
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	3 cut(s)	27, 333, 726
BseMII	CTCAG	2 cut(s)	369, 707
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	4 cut(s)	81, 84, 603, 625
BshNI	GGYRCC	2 cut(s)	659, 732
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	488
BsmAI	GTCTC	3 cut(s)	205, 351, 797
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp143I	GATC	3 cut(s)	281, 301, 627
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	5 cut(s)	5, 241, 331, 422, 740
BspCNI	CTCAG	2 cut(s)	368, 708
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	661, 734
BspMI	ACCTGC	2 cut(s)	262, 391
BspPI	GGATC	1 cut(s)	296
BspQI	GCTCTTC	1 cut(s)	390
BspT107I	GGYRCC	2 cut(s)	659, 732
BsrBI	CCGCTC	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	3 cut(s)	281, 301, 627
BssSI	CACGAG	1 cut(s)	666
BssT1I	CCWWGG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	666
Bst4CI	ACNGT	2 cut(s)	341, 445
Bst6I	CTCTTC	2 cut(s)	201, 390
BstC8I	GCNNGC	2 cut(s)	192, 485
BstDEI	CTNAG	3 cut(s)	141, 355, 716
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	3 cut(s)	27, 333, 726
BstKTI	GATC	3 cut(s)	284, 304, 630
BstMAI	GTCTC	3 cut(s)	205, 351, 797
BstMBI	GATC	3 cut(s)	281, 301, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	194
BstV1I	GCAGC	4 cut(s)	81, 84, 603, 625
Bsu36I	CCTNAGG	1 cut(s)	716
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	3 cut(s)	27, 333, 726
BtsIMutI	CAGTG	1 cut(s)	346
BveI	ACCTGC	2 cut(s)	262, 391
Cac8I	GCNNGC	2 cut(s)	192, 485
CaiI	CAGNNNCTG	1 cut(s)	616
CciI	TCATGA	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	660, 733
CspCI	CAANNNNNGTGG	4 cut(s)	108, 143, 687, 722
CviAII	CATG	6 cut(s)	100, 191, 290, 370, 388, 625
CviQI	GTAC	2 cut(s)	660, 733
DdeI	CTNAG	3 cut(s)	141, 355, 716
DpnI	GATC	3 cut(s)	283, 303, 629
DpnII	GATC	3 cut(s)	281, 301, 627
DriI	GACNNNNNGTC	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	201, 390
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EarI	CTCTTC	2 cut(s)	201, 390
Ecl136II	GAGCTC	1 cut(s)	647
Eco130I	CCWWGG	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	649
Eco53kI	GAGCTC	1 cut(s)	647
Eco57I	CTGAAG	2 cut(s)	53, 327
Eco81I	CCTNAGG	1 cut(s)	716
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	647
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	6 cut(s)	103, 194, 293, 373, 391, 628
FatI	CATG	6 cut(s)	99, 190, 289, 369, 387, 624
FauNDI	CATATG	1 cut(s)	727
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	6 cut(s)	6, 70, 73, 614, 617, 740
FokI	GGATG	3 cut(s)	14, 340, 733
FriOI	GRGCYC	1 cut(s)	649
Fsp4HI	GCNGC	6 cut(s)	6, 70, 73, 614, 617, 740
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	6 cut(s)	6, 70, 73, 614, 617, 740
Hin1II	CATG	6 cut(s)	103, 194, 293, 373, 391, 628
HinfI	GANTC	2 cut(s)	509, 520
HphI	GGTGA	3 cut(s)	154, 243, 341
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	2 cut(s)	262, 414
Hpy188III	TCNNGA	6 cut(s)	31, 299, 305, 370, 490, 802
Hpy8I	GTNNAC	1 cut(s)	590
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	1 cut(s)	760
HpyCH4III	ACNGT	2 cut(s)	341, 445
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	3 cut(s)	364, 463, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	3 cut(s)	141, 355, 716
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	6 cut(s)	103, 194, 293, 373, 391, 628
KpnI	GGTACC	2 cut(s)	663, 736
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	3 cut(s)	281, 301, 627
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	3 cut(s)	223, 238, 480
Lsp1109I	GCAGC	4 cut(s)	81, 84, 603, 625
LweI	GCATC	2 cut(s)	318, 711
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	83, 88
MalI	GATC	3 cut(s)	283, 303, 629
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	3 cut(s)	281, 301, 627
MboII	GAAGA	6 cut(s)	46, 218, 320, 407, 461, 563
MhlI	GDGCHC	1 cut(s)	649
MluCI	AATT	3 cut(s)	171, 268, 755
MspA1I	CMGCKG	1 cut(s)	616
MwoI	GCNNNNNNNGC	1 cut(s)	397
NcoI	CCATGG	1 cut(s)	289
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	3 cut(s)	281, 301, 627
NlaIII	CATG	6 cut(s)	103, 194, 293, 373, 391, 628
NlaIV	GGNNCC	2 cut(s)	661, 734
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	194
PaeR7I	CTCGAG	1 cut(s)	488
PagI	TCATGA	1 cut(s)	369
PaqCI	CACCTGC	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	509, 520
PkrI	GCNGC	6 cut(s)	7, 71, 74, 615, 618, 741
Psp124BI	GAGCTC	1 cut(s)	649
PspN4I	GGNNCC	2 cut(s)	661, 734
PstNI	CAGNNNCTG	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	616
RsaI	GTAC	2 cut(s)	661, 734
RsaNI	GTAC	2 cut(s)	660, 733
SacI	GAGCTC	1 cut(s)	649
SapI	GCTCTTC	1 cut(s)	390
SatI	GCNGC	6 cut(s)	6, 70, 73, 614, 617, 740
Sau3AI	GATC	3 cut(s)	281, 301, 627
SduI	GDGCHC	1 cut(s)	649
SfaNI	GCATC	2 cut(s)	318, 711
Sfr274I	CTCGAG	1 cut(s)	488
SlaI	CTCGAG	1 cut(s)	488
SmlI	CTYRAG	2 cut(s)	21, 488
SmoI	CTYRAG	2 cut(s)	21, 488
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	3 cut(s)	171, 268, 755
SsiI	CCGC	5 cut(s)	5, 241, 331, 422, 740
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	1 cut(s)	649
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	341, 445
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	7 cut(s)	65, 94, 199, 393, 447, 489, 801
TasI	AATT	3 cut(s)	171, 268, 755
TauI	GCSGC	2 cut(s)	8, 742
TfiI	GAWTC	2 cut(s)	509, 520
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	4 cut(s)	69, 72, 613, 616
Tsp45I	GTSAC	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	595
TspRI	CASTG	1 cut(s)	346
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	1 cut(s)	194
XhoI	CTCGAG	1 cut(s)	488
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.