Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002958.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Reverse (-)

2603 .. 3436

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002958.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggcttccaagaacactcaagttatctcgaagaacaagttcaagacaacgaccaccaaatcgagcagcagctcatctggtcatgtcactcgaagcatggcaaaggttcagccaacaacatttgtggctttgccttctaagcctcgccaaccaatcatcaccctggaaagtttaggggcagggaagcatgtccctcgaagtgaagagagacaagctccaaatacaaaatcaagggagcggtcgttctcacccgcctctgatgacaattcaagcactggatcacaccatggaagtcctgatcctgaagaaaataacacttctgggatgcggtcagacagtgcgtctcacctctcagcaatgcaagtcatgatgactggggcatccacgctcgaggagcagctagctaatctgatggaggcggttcaaaagctcaccaataccgtcgaagaaaaggatatacagattgctcaactttggagtaggcttgagaaacaaaatgatgaggattctgctaggattccgtacaaggatgacaaagaaacgtcaaaggcaaatgacaaggacagtgatggccaacttggttctttgtccgtccagcagctgcaagacatgaccaacaactccattagagctcaatatggaggtacctctcgtgattccctcacatattccaagccatacacaaaaaggatggatagcctaaggatgccctatgggtaccagccacccaagtttcagcaattcgaggggaagggcaatccaaaacaacatattgctcatttcgtcgagacttgccacaatgcaggaacggagggagatcatcttgttaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

277

Amino Acids

30.57

Weight (kDa)

8.48

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	644, 717
AccB1I	GGYRCC	2 cut(s)	644, 717
AccBSI	CCGCTC	1 cut(s)	238
AciI	CCGC	4 cut(s)	238, 252, 328, 419
AclWI	GGATC	2 cut(s)	286, 293
AcoI	YGGCCR	1 cut(s)	571
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	3 cut(s)	524, 646, 719
AgsI	TTSAA	3 cut(s)	43, 270, 425
AhdI	GACNNNNNGTC	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	162
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	7 cut(s)	72, 215, 400, 404, 430, 601, 632
AluI	AGCT	7 cut(s)	72, 215, 400, 404, 430, 601, 632
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	3 cut(s)	202, 348, 782
AlwI	GGATC	2 cut(s)	286, 293
AlwNI	CAGNNNCTG	1 cut(s)	601
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	571
ApeKI	GCWGC	5 cut(s)	66, 69, 397, 598, 601
Asp700I	GAANNNNTTC	1 cut(s)	38
Asp718I	GGTACC	2 cut(s)	644, 717
AsuHPI	GGTGA	4 cut(s)	151, 240, 338, 424
AsuNHI	GCTAGC	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	701
BalI	TGGCCA	1 cut(s)	573
BanI	GGYRCC	2 cut(s)	644, 717
BanII	GRGCYC	1 cut(s)	634
BauI	CACGAG	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	5 cut(s)	78, 81, 409, 588, 610
BccI	CCATC	3 cut(s)	406, 563, 685
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	164
BcoDI	GTCTC	3 cut(s)	202, 348, 782
BfaI	CTAG	2 cut(s)	401, 513
BisI	GCNGC	5 cut(s)	67, 70, 398, 599, 602
BlsI	GCNGC	5 cut(s)	68, 71, 399, 600, 603
Bme1390I	CCNGG	1 cut(s)	164
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	389
BmiI	GGNNCC	2 cut(s)	646, 719
BmrFI	CCNGG	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	3 cut(s)	315, 389, 696
BmtI	GCTAGC	1 cut(s)	404
BmuI	ACTGGG	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpuEI	CTTGAG	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	162, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse1I	ACTGG	2 cut(s)	280, 379
Bse21I	CCTNAGG	1 cut(s)	701
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	162, 286
BseGI	GGATG	5 cut(s)	330, 380, 535, 696, 711
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	2 cut(s)	280, 379
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	5 cut(s)	78, 81, 409, 588, 610
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	573
BshNI	GGYRCC	2 cut(s)	644, 717
BsiEI	CGRYCG	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	634
BsiHKCI	CYCGRG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	3 cut(s)	202, 348, 782
BsmBI	CGTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	573
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	3 cut(s)	278, 298, 817
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	4 cut(s)	238, 252, 328, 419
BspANI	GGCC	1 cut(s)	573
BspCNI	CTCAG	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	646, 719
BspOI	GCTAGC	1 cut(s)	404
BspPI	GGATC	2 cut(s)	286, 293
BspT107I	GGYRCC	2 cut(s)	644, 717
BsrBI	CCGCTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	280, 379
BssECI	CCNNGG	2 cut(s)	162, 286
BssMI	GATC	3 cut(s)	278, 298, 817
BssSI	CACGAG	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	338, 442, 566
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	3 cut(s)	138, 352, 701
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	5 cut(s)	330, 380, 535, 696, 711
BstKTI	GATC	3 cut(s)	281, 301, 820
BstMAI	GTCTC	3 cut(s)	202, 348, 782
BstMBI	GATC	3 cut(s)	278, 298, 817
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 394
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	162
BstV1I	GCAGC	5 cut(s)	78, 81, 409, 588, 610
Bsu36I	CCTNAGG	1 cut(s)	701
BsuRI	GGCC	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	5 cut(s)	330, 380, 535, 696, 711
BtsIMutI	CAGTG	3 cut(s)	273, 343, 571
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	601
CciI	TCATGA	1 cut(s)	366
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	3 cut(s)	523, 645, 718
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	6 cut(s)	83, 97, 188, 287, 367, 610
CviQI	GTAC	3 cut(s)	523, 645, 718
DdeI	CTNAG	3 cut(s)	138, 352, 701
DpnI	GATC	3 cut(s)	280, 300, 819
DpnII	GATC	3 cut(s)	278, 298, 817
DriI	GACNNNNNGTC	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	198
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	632
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	701
Eco88I	CYCGRG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	286
Esp3I	CGTCTC	1 cut(s)	348
FaeI	CATG	6 cut(s)	86, 100, 191, 290, 370, 613
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	6 cut(s)	82, 96, 187, 286, 366, 609
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	5 cut(s)	67, 70, 398, 599, 602
FokI	GGATG	5 cut(s)	337, 367, 542, 703, 718
FriOI	GRGCYC	1 cut(s)	634
Fsp4HI	GCNGC	5 cut(s)	67, 70, 398, 599, 602
FspBI	CTAG	2 cut(s)	401, 513
GluI	GCNGC	5 cut(s)	67, 70, 398, 599, 602
HaeIII	GGCC	1 cut(s)	573
HgaI	GACGC	1 cut(s)	330
Hin1II	CATG	6 cut(s)	86, 100, 191, 290, 370, 613
HinfI	GANTC	3 cut(s)	506, 517, 656
HphI	GGTGA	4 cut(s)	151, 240, 338, 424
Hpy188I	TCNGA	3 cut(s)	259, 334, 411
Hpy188III	TCNNGA	7 cut(s)	28, 43, 296, 302, 367, 653, 787
Hpy99I	CGWCG	2 cut(s)	446, 788
HpyAV	CCTTC	2 cut(s)	144, 745
HpyCH4III	ACNGT	3 cut(s)	338, 442, 566
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	3 cut(s)	361, 604, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 394
HpyF3I	CTNAG	3 cut(s)	138, 352, 701
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	6 cut(s)	86, 100, 191, 290, 370, 613
KpnI	GGTACC	2 cut(s)	648, 721
Kzo9I	GATC	3 cut(s)	278, 298, 817
LmnI	GCTCC	3 cut(s)	220, 235, 394
Lsp1109I	GCAGC	5 cut(s)	78, 81, 409, 588, 610
LweI	GCATC	3 cut(s)	315, 389, 696
MaeI	CTAG	2 cut(s)	401, 513
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	280, 300, 819
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	3 cut(s)	278, 298, 817
MboII	GAAGA	4 cut(s)	43, 215, 317, 458
MhlI	GDGCHC	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	2 cut(s)	265, 740
MluNI	TGGCCA	1 cut(s)	573
Mox20I	TGGCCA	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	573
MseI	TTAA	1 cut(s)	828
Msp20I	TGGCCA	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	601
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	139, 394
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	3 cut(s)	278, 298, 817
NheI	GCTAGC	1 cut(s)	400
NlaIII	CATG	6 cut(s)	86, 100, 191, 290, 370, 613
NlaIV	GGNNCC	2 cut(s)	646, 719
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	389
PagI	TCATGA	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	506, 517, 656
PkrI	GCNGC	5 cut(s)	68, 71, 399, 600, 603
Psp124BI	GAGCTC	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	646, 719
PspXI	VCTCGAGB	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	3 cut(s)	524, 646, 719
RsaNI	GTAC	3 cut(s)	523, 645, 718
SacI	GAGCTC	1 cut(s)	634
SaqAI	TTAA	1 cut(s)	828
SatI	GCNGC	5 cut(s)	67, 70, 398, 599, 602
Sau3AI	GATC	3 cut(s)	278, 298, 817
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	634
SfaNI	GCATC	3 cut(s)	315, 389, 696
Sfr274I	CTCGAG	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	3 cut(s)	18, 389, 485
SmoI	CTYRAG	3 cut(s)	18, 389, 485
Sse9I	AATT	2 cut(s)	265, 740
SsiI	CCGC	4 cut(s)	238, 252, 328, 419
SspMI	CTAG	2 cut(s)	401, 513
SstI	GAGCTC	1 cut(s)	634
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	3 cut(s)	338, 442, 566
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	8 cut(s)	29, 62, 91, 196, 390, 444, 744, 786
TasI	AATT	2 cut(s)	265, 740
TfiI	GAWTC	3 cut(s)	506, 517, 656
Tru1I	TTAA	1 cut(s)	828
Tru9I	TTAA	1 cut(s)	828
TscAI	CASTG	3 cut(s)	280, 343, 571
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	5 cut(s)	66, 69, 397, 598, 601
Tsp45I	GTSAC	1 cut(s)	85
TspGWI	ACGGA	3 cut(s)	510, 580, 824
TspRI	CASTG	3 cut(s)	280, 343, 571
XceI	RCATGY	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	2 cut(s)	401, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.