Rmu_co8247513.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8247513.1
Physical Location & Seq
Reverse (-)
183 .. 608
426 bp
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UTR
Exon/CDS
Intron
Rmu_co8247513.1_g000001.1.cds

Sequence Viewer

Length: 426 bp
atgtccctcgaagtgaagagagacaagctccaaatacaaaatcaatggaatgggtcattctcaccagcctctgatgacaactcaagcaccggatcatacaaggggagttctgatgctgaagaacataacacttttggaatgcagtcagacggtatgtcttacccctcagcaatgcaagtcatgatgactggggtagccacgctcgaggagcaggtggctactctgatggaggcggttctaaagctcaccaatactgtcgaagaaaaggatatgcagattgctcaactttggagtaggcttgagaaacaaaatgatgaggattgtgctaggattccgtacaaggatgacaaagacaaacaagaagaaacttcaaaggcaaatgacaaggacagtgaaggccaacttggttctttgtccgtccagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

15.7

Weight (kDa)

4.4

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AciI CCGC 1 cut(s) 233
AclWI GGATC 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 338
AgsI TTSAA 1 cut(s) 372
AhdI GACNNNNNGTC 1 cut(s) 154
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 2 cut(s) 28, 244
AluI AGCT 2 cut(s) 28, 244
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 1 cut(s) 100
AlwNI CAGNNNCTG 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 54, 238
AvaI CYCGRG 1 cut(s) 203
BbvCI CCTCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 202
BmeRI GACNNNNNGTC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 12, 44
Bpu10I CCTNAGC 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 67, 320
BsaWI WCCGGW 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 193, 421
Bse3DI GCAATG 1 cut(s) 177
BseGI GGATG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 193, 421
BseRI GAGGAG 1 cut(s) 221
BshFI GGCC 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 15
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 1 cut(s) 399
BsoBI CYCGRG 1 cut(s) 203
Bsp143I GATC 1 cut(s) 92
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 1 cut(s) 179
BspHI TCATGA 1 cut(s) 180
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 2 cut(s) 193, 421
BssMI GATC 1 cut(s) 92
Bst4CI ACNGT 3 cut(s) 152, 256, 392
Bst6I CTCTTC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 1 cut(s) 95
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 399
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 202
CaiI CAGNNNCTG 1 cut(s) 71
CciI TCATGA 1 cut(s) 180
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 181
CviJI RGCY 7 cut(s) 28, 68, 197, 218, 244, 298, 399
CviKI_1 RGCY 7 cut(s) 28, 68, 197, 218, 244, 298, 399
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 166
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
DriI GACNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 11
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 203
FaeI CATG 1 cut(s) 184
FaiI YATR 5 cut(s) 97, 126, 155, 182, 272
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FatI CATG 1 cut(s) 180
FokI GGATG 1 cut(s) 356
FspBI CTAG 1 cut(s) 327
HaeIII GGCC 1 cut(s) 399
HapII CCGG 1 cut(s) 90
Hin1II CATG 1 cut(s) 184
HinfI GANTC 1 cut(s) 331
HpaII CCGG 1 cut(s) 90
HphI GGTGA 2 cut(s) 54, 238
Hpy188I TCNGA 4 cut(s) 73, 112, 148, 225
Hpy188III TCNNGA 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 3 cut(s) 152, 256, 392
HpyCH4V TGCA 3 cut(s) 142, 175, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 166
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 2 cut(s) 33, 208
LpnPI CCDG 4 cut(s) 78, 103, 174, 197
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 327
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 4 cut(s) 28, 131, 272, 374
MnlI CCTC 6 cut(s) 17, 79, 175, 199, 223, 310
MspI CCGG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 1 cut(s) 92
NlaIII CATG 1 cut(s) 184
PaeR7I CTCGAG 1 cut(s) 203
PagI TCATGA 1 cut(s) 180
PaqCI CACCTGC 1 cut(s) 202
PctI GAATGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 331
PspXI VCTCGAGB 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
Sau3AI GATC 1 cut(s) 92
SetI ASST 3 cut(s) 30, 216, 246
SfaNI GCATC 1 cut(s) 103
Sfr274I CTCGAG 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 3 cut(s) 82, 203, 299
SmoI CTYRAG 3 cut(s) 82, 203, 299
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 327
TaaI ACNGT 3 cut(s) 152, 256, 392
TaqI TCGA 3 cut(s) 9, 204, 258
TfiI GAWTC 1 cut(s) 331
TscAI CASTG 1 cut(s) 397
TspGWI ACGGA 2 cut(s) 324, 406
TspRI CASTG 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 203
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.