Rmu_sc0001438.1_g000045

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001438.1
OG0007494
Physical Location & Seq
Reverse (-)
157945 .. 158337
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001438.1_g000045.1.cds

Sequence Viewer

Length: 393 bp
atggcaaaggttcagcctacaacatttgtggctttgccttctaagcctcgccaaccaatcatcaccctggaaattttaggggcaggaaacatttccctcgaagtgaagatagacaagctccaaatacaaaatcaagggaacggtcattctcacctgcctctgatgacaactcaagtaccagatcataccatggaagatcctgaagaaaataacacttctgggatgcactcagacggtgcatctcacccctcagcaatgcaagtcatgatgactggggcaaccaagctcgaagaccagatagctaatctaatggagctggttcaaaagctcaccaatatcgtcgaaggatatgcagattgctcaactttggagcaggctcgagaaacaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.18

Weight (kDa)

5.06

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 162
Acc36I ACCTGC 1 cut(s) 162
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 177
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 5 cut(s) 118, 286, 302, 316, 328
AluI AGCT 5 cut(s) 118, 286, 302, 316, 328
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 378
ApoI RAATTY 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 91
AsuHPI GGTGA 4 cut(s) 55, 143, 236, 322
AvaI CYCGRG 1 cut(s) 378
BaeI ACNNNNGTAYC 2 cut(s) 159, 192
BbsI GAAGAC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 68
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 213, 248
BmuI ACTGGG 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 66, 189
Bse1I ACTGG 1 cut(s) 277
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 66, 189
BseGI GGATG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 243, 264
BseNI ACTGG 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 378
BsoBI CYCGRG 1 cut(s) 378
Bsp143I GATC 2 cut(s) 181, 196
Bsp19I CCATGG 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 242, 263
BspHI TCATGA 1 cut(s) 264
BspMI ACCTGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 2 cut(s) 66, 189
BssMI GATC 2 cut(s) 181, 196
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 143, 236
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 3 cut(s) 42, 229, 250
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 228
BstKTI GATC 2 cut(s) 184, 199
BstMBI GATC 2 cut(s) 181, 196
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 228
BveI ACCTGC 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 375
CciI TCATGA 1 cut(s) 264
Csp6I GTAC 1 cut(s) 176
CspCI CAANNNNNGTGG 2 cut(s) 9, 44
CviAII CATG 2 cut(s) 190, 265
CviJI RGCY 9 cut(s) 16, 32, 46, 118, 286, 302, 316, 328, 377
CviKI_1 RGCY 9 cut(s) 16, 32, 46, 118, 286, 302, 316, 328, 377
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 3 cut(s) 42, 229, 250
DpnI GATC 2 cut(s) 183, 198
DpnII GATC 2 cut(s) 181, 196
Eco130I CCWWGG 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 2 cut(s) 193, 268
FaiI YATR 4 cut(s) 186, 191, 266, 351
FatI CATG 2 cut(s) 189, 264
FokI GGATG 1 cut(s) 235
Hin1II CATG 2 cut(s) 193, 268
HphI GGTGA 4 cut(s) 55, 143, 236, 322
Hpy188I TCNGA 2 cut(s) 162, 232
Hpy188III TCNNGA 3 cut(s) 200, 265, 380
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 2 cut(s) 48, 338
HpyCH4III ACNGT 2 cut(s) 143, 236
HpyCH4V TGCA 4 cut(s) 226, 239, 259, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 3 cut(s) 42, 229, 250
Hsp92II CATG 2 cut(s) 193, 268
Kzo9I GATC 2 cut(s) 181, 196
LmnI GCTCC 3 cut(s) 123, 313, 370
LweI GCATC 2 cut(s) 213, 248
MalI GATC 2 cut(s) 183, 198
MboI GATC 2 cut(s) 181, 196
MboII GAAGA 4 cut(s) 118, 206, 215, 302
MflI RGATCY 1 cut(s) 196
MluCI AATT 1 cut(s) 72
MnlI CCTC 4 cut(s) 57, 107, 168, 259
MroXI GAANNNNTTC 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 43
NcoI CCATGG 1 cut(s) 189
NdeII GATC 2 cut(s) 181, 196
NlaIII CATG 2 cut(s) 193, 268
PaeR7I CTCGAG 1 cut(s) 378
PagI TCATGA 1 cut(s) 264
PaqCI CACCTGC 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
Sau3AI GATC 2 cut(s) 181, 196
ScrFI CCNGG 1 cut(s) 68
SetI ASST 7 cut(s) 12, 120, 156, 288, 304, 318, 330
SfaNI GCATC 2 cut(s) 213, 248
Sfr274I CTCGAG 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 378
SmlI CTYRAG 2 cut(s) 171, 378
SmoI CTYRAG 2 cut(s) 171, 378
Sse9I AATT 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 143, 236
TaqI TCGA 4 cut(s) 99, 288, 342, 379
TasI AATT 1 cut(s) 72
XapI RAATTY 1 cut(s) 72
XhoI CTCGAG 1 cut(s) 378
XmnI GAANNNNTTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.